Wall clock time and date at job start Mon Mar 30 2020 01:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38623 * 120.45033 * 2 1 4 4 C 1.38580 * 118.40099 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.44982 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47379 * 94.99838 * 5 4 3 7 7 C 1.46895 * 111.00119 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47270 * 179.97438 * 7 6 5 9 9 H 1.09009 * 109.47154 * 54.99975 * 8 7 6 10 10 C 1.47200 * 109.47451 * 295.00037 * 8 7 6 11 11 N 6.80715 * 109.18922 * 40.85775 * 2 1 3 12 12 C 1.52996 * 109.47347 * 174.99819 * 8 7 6 13 13 C 1.50702 * 109.47159 * 185.00014 * 12 8 7 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 8 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 8 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 N 1.32351 * 119.10358 * 0.27409 * 4 3 2 22 22 C 1.31788 * 120.81598 * 359.44159 * 21 4 3 23 23 C 1.50704 * 119.11811 * 180.26827 * 22 21 4 24 24 N 1.31804 * 121.75440 * 0.57301 * 22 21 4 25 25 H 1.08997 * 109.47235 * 89.99426 * 1 2 3 26 26 H 1.08994 * 109.47308 * 210.00319 * 1 2 3 27 27 H 1.09010 * 109.46803 * 330.00346 * 1 2 3 28 28 H 1.07991 * 120.80036 * 359.95399 * 3 2 1 29 29 H 1.09002 * 109.47190 * 334.99642 * 5 4 3 30 30 H 1.08996 * 109.47247 * 214.99833 * 5 4 3 31 31 H 1.00905 * 110.99468 * 303.95787 * 6 5 4 32 32 H 1.08998 * 109.47324 * 59.99878 * 7 6 5 33 33 H 1.09002 * 109.47421 * 300.00055 * 7 6 5 34 34 H 1.09004 * 109.47066 * 65.00217 * 12 8 7 35 35 H 1.08994 * 109.47405 * 305.00047 * 12 8 7 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47043 * 270.29502 * 23 22 21 38 38 H 1.08997 * 109.47171 * 30.29739 * 23 22 21 39 39 H 1.09005 * 109.47056 * 150.29892 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1455 0.0005 5 6 4.4040 2.4164 0.0012 6 7 4.7684 2.7643 1.3811 7 6 5.5597 4.0013 1.4207 8 6 5.9188 4.3307 2.8710 9 1 6.4238 3.4770 3.3232 10 6 4.6905 4.6300 3.6249 11 7 3.7444 4.8624 4.2057 12 6 6.8460 5.5473 2.9031 13 6 7.2980 5.7973 4.3189 14 1 6.9582 5.1526 5.1160 15 6 8.1502 6.8452 4.5956 16 7 8.5642 7.6300 3.6249 17 14 8.7165 7.1504 6.3493 18 1 9.4427 5.9557 6.8500 19 1 9.6203 8.3283 6.3797 20 1 7.5364 7.4101 7.2126 21 7 4.1964 -0.0332 -0.0045 22 6 3.4955 -1.1493 0.0011 23 6 4.2205 -2.4705 0.0012 24 7 2.1775 -1.1407 0.0006 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.6901 2.1418 -0.0007 29 1 3.8139 3.2234 -0.4333 30 1 5.3095 2.2707 -0.5879 31 1 3.9478 2.8415 1.9632 32 1 4.9772 4.8190 0.9963 33 1 6.4732 3.8670 0.8414 34 1 6.3110 6.4218 2.5328 35 1 7.7147 5.3589 2.2724 36 1 9.1635 8.3675 3.8197 37 1 4.3956 -2.7889 -1.0265 38 1 5.1753 -2.3610 0.5154 39 1 3.6147 -3.2172 0.5147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579623161.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:55 Heat of formation + Delta-G solvation = 53.920093 kcal Electronic energy + Delta-G solvation = -19670.722660 eV Core-core repulsion = 16612.765361 eV Total energy + Delta-G solvation = -3057.957299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.30316 -37.63164 -35.76692 -34.64464 -34.02207 -33.13013 -31.40503 -29.45170 -28.60751 -27.31241 -25.37677 -22.75200 -22.41426 -21.99267 -21.41880 -17.98054 -16.82967 -16.61017 -16.10080 -15.69016 -15.48680 -15.05898 -14.82484 -14.32088 -13.90907 -13.67402 -13.37310 -13.18107 -12.97304 -12.78503 -12.58998 -12.48427 -12.41267 -12.10692 -12.04648 -11.69870 -11.30041 -11.04739 -11.01454 -10.76928 -10.63477 -10.50161 -10.28881 -9.62427 -9.50623 -9.36261 -9.24537 -8.48146 -8.44843 -6.10825 -4.14040 0.71583 0.87576 3.30865 3.34928 3.38410 3.44401 3.53370 3.59425 3.69173 3.80331 4.08406 4.36915 4.45203 4.73803 4.75634 4.80895 5.04224 5.07040 5.17404 5.25114 5.27224 5.29525 5.35326 5.39875 5.50605 5.62075 5.64777 5.73260 5.75720 6.09775 6.26108 6.30032 6.50509 6.88432 6.94855 7.26584 7.41547 7.50336 7.83970 7.99129 8.21402 8.35463 8.90139 9.51457 11.00022 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.029193 B = 0.003064 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.915932 B = 9135.243668 C = 9408.151991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.177 3.823 3 C -0.233 4.233 4 C 0.191 3.809 5 C 0.105 3.895 6 N -0.681 5.681 7 C 0.069 3.931 8 C 0.006 3.994 9 H 0.112 0.888 10 C 0.241 3.759 11 N -0.476 5.476 12 C 0.033 3.967 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.277 1.277 21 N -0.502 5.502 22 C 0.320 3.680 23 C -0.084 4.084 24 N -0.526 5.526 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.338 0.662 32 H 0.038 0.962 33 H 0.096 0.904 34 H 0.025 0.975 35 H 0.041 0.959 36 H 0.263 0.737 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.180 -15.453 -11.853 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.031 3.969 3 C -0.255 4.255 4 C 0.044 3.956 5 C -0.024 4.024 6 N -0.313 5.313 7 C -0.061 4.061 8 C -0.016 4.016 9 H 0.130 0.870 10 C -0.076 4.076 11 N -0.153 5.153 12 C -0.005 4.005 13 C -0.566 4.566 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.203 1.203 21 N -0.217 5.217 22 C 0.053 3.947 23 C -0.142 4.142 24 N -0.242 5.242 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.162 0.838 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.156 0.844 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.456 -16.213 -11.017 22.704 hybrid contribution -0.406 1.767 0.649 1.926 sum -11.863 -14.446 -10.368 21.375 Atomic orbital electron populations 1.20778 0.87858 1.04126 1.03570 1.21699 0.97520 0.88086 0.89611 1.22626 0.95861 1.00599 1.06438 1.21625 0.90913 0.93983 0.89055 1.20858 0.99079 0.90335 0.92150 1.60510 1.25948 1.36661 1.08166 1.22124 0.98485 0.88747 0.96707 1.19345 0.87945 1.03519 0.90780 0.87009 1.29256 0.93696 0.91582 0.93048 1.80960 1.13718 1.10666 1.09951 1.19157 0.93271 0.89713 0.98379 1.21107 1.28685 1.13662 0.93144 0.92555 1.24949 0.95976 0.95796 0.97209 1.69927 1.33818 1.17566 1.31718 0.86647 0.78674 0.77814 0.84907 1.19980 1.21174 1.20279 1.68122 1.41475 0.98084 1.14037 1.23300 0.86515 0.94865 0.90023 1.20560 1.00102 0.89835 1.03741 1.68085 1.09860 1.30425 1.15842 0.89749 0.89928 0.90075 0.83817 0.92948 0.88223 0.84391 0.94364 0.88565 0.95714 0.94094 0.92718 0.89741 0.89330 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.22 36.00 0.37 -0.38 16 2 C 0.18 1.89 6.82 -82.24 -0.56 1.33 16 3 C -0.23 -2.47 9.52 -39.31 -0.37 -2.84 16 4 C 0.19 2.33 6.34 -82.24 -0.52 1.81 16 5 C 0.11 1.18 6.04 -4.98 -0.03 1.15 16 6 N -0.68 -9.09 6.49 -115.07 -0.75 -9.84 16 7 C 0.07 0.98 5.12 -3.83 -0.02 0.96 16 8 C 0.01 0.11 2.42 -93.41 -0.23 -0.12 16 9 H 0.11 1.99 8.14 -51.92 -0.42 1.57 16 10 C 0.24 4.82 12.97 -20.82 -0.27 4.55 16 11 N -0.48 -10.26 18.53 42.09 0.78 -9.48 16 12 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 13 C -0.53 -14.01 8.60 -34.44 -0.30 -14.31 16 14 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 N -0.50 -6.70 10.27 -6.99 -0.07 -6.77 16 22 C 0.32 3.93 7.64 -157.19 -1.20 2.72 16 23 C -0.08 -0.73 10.32 36.01 0.37 -0.36 16 24 N -0.53 -6.41 10.27 -6.99 -0.07 -6.48 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.46 8.10 -51.92 -0.42 0.04 16 28 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.05 0.50 8.06 -51.93 -0.42 0.08 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.34 4.70 7.80 -39.29 -0.31 4.40 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -31.66 343.07 -7.96 -39.62 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.75 Total: -0.62 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.98 Total: -3.21 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.63 Total: -57.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.66 -7.96 -39.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579623161.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.540 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds