Wall clock time and date at job start Mon Mar 30 2020 01:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38623 * 120.45033 * 2 1 4 4 C 1.38580 * 118.40099 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.44982 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47379 * 94.99838 * 5 4 3 7 7 C 1.46895 * 111.00119 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47270 * 179.97438 * 7 6 5 9 9 H 1.09009 * 109.47154 * 54.99975 * 8 7 6 10 10 C 1.47200 * 109.47451 * 295.00037 * 8 7 6 11 11 N 6.80715 * 109.18922 * 40.85775 * 2 1 3 12 12 C 1.52996 * 109.47347 * 174.99819 * 8 7 6 13 13 C 1.50702 * 109.47159 * 185.00014 * 12 8 7 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 8 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 8 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 N 1.32351 * 119.10358 * 0.27409 * 4 3 2 22 22 C 1.31788 * 120.81598 * 359.44159 * 21 4 3 23 23 C 1.50704 * 119.11811 * 180.26827 * 22 21 4 24 24 N 1.31804 * 121.75440 * 0.57301 * 22 21 4 25 25 H 1.08997 * 109.47235 * 89.99426 * 1 2 3 26 26 H 1.08994 * 109.47308 * 210.00319 * 1 2 3 27 27 H 1.09010 * 109.46803 * 330.00346 * 1 2 3 28 28 H 1.07991 * 120.80036 * 359.95399 * 3 2 1 29 29 H 1.09002 * 109.47190 * 334.99642 * 5 4 3 30 30 H 1.08996 * 109.47247 * 214.99833 * 5 4 3 31 31 H 1.00905 * 110.99468 * 303.95787 * 6 5 4 32 32 H 1.08998 * 109.47324 * 59.99878 * 7 6 5 33 33 H 1.09002 * 109.47421 * 300.00055 * 7 6 5 34 34 H 1.09004 * 109.47066 * 65.00217 * 12 8 7 35 35 H 1.08994 * 109.47405 * 305.00047 * 12 8 7 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47043 * 270.29502 * 23 22 21 38 38 H 1.08997 * 109.47171 * 30.29739 * 23 22 21 39 39 H 1.09005 * 109.47056 * 150.29892 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1455 0.0005 5 6 4.4040 2.4164 0.0012 6 7 4.7684 2.7643 1.3811 7 6 5.5597 4.0013 1.4207 8 6 5.9188 4.3307 2.8710 9 1 6.4238 3.4770 3.3232 10 6 4.6905 4.6300 3.6249 11 7 3.7444 4.8624 4.2057 12 6 6.8460 5.5473 2.9031 13 6 7.2980 5.7973 4.3189 14 1 6.9582 5.1526 5.1160 15 6 8.1502 6.8452 4.5956 16 7 8.5642 7.6300 3.6249 17 14 8.7165 7.1504 6.3493 18 1 9.4427 5.9557 6.8500 19 1 9.6203 8.3283 6.3797 20 1 7.5364 7.4101 7.2126 21 7 4.1964 -0.0332 -0.0045 22 6 3.4955 -1.1493 0.0011 23 6 4.2205 -2.4705 0.0012 24 7 2.1775 -1.1407 0.0006 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.6901 2.1418 -0.0007 29 1 3.8139 3.2234 -0.4333 30 1 5.3095 2.2707 -0.5879 31 1 3.9478 2.8415 1.9632 32 1 4.9772 4.8190 0.9963 33 1 6.4732 3.8670 0.8414 34 1 6.3110 6.4218 2.5328 35 1 7.7147 5.3589 2.2724 36 1 9.1635 8.3675 3.8197 37 1 4.3956 -2.7889 -1.0265 38 1 5.1753 -2.3610 0.5154 39 1 3.6147 -3.2172 0.5147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579623161.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:54 Heat of formation + Delta-G solvation = 33.669017 kcal Electronic energy + Delta-G solvation = -19671.600813 eV Core-core repulsion = 16612.765361 eV Total energy + Delta-G solvation = -3058.835452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.12658 -38.99013 -37.02231 -35.69685 -35.35681 -34.52531 -32.94340 -30.12302 -29.58683 -28.56931 -26.72944 -24.12322 -23.58938 -23.19699 -22.38516 -18.86208 -18.52907 -18.26034 -17.13831 -16.72478 -16.48414 -16.38188 -15.92255 -15.58006 -14.97914 -14.82925 -14.32070 -14.29002 -14.23615 -14.00041 -13.85085 -13.48574 -13.31960 -13.15755 -13.12182 -13.06392 -12.91245 -12.65493 -12.47708 -12.36732 -11.99095 -11.82439 -11.51150 -11.34668 -11.16135 -10.54560 -10.32158 -10.21555 -9.48244 -8.19513 -6.27482 -0.11600 0.04091 1.41374 1.42270 1.49621 1.92906 1.95661 2.41317 2.59499 2.93386 3.02156 3.15559 3.22614 3.23888 3.49929 3.96504 4.04134 4.12664 4.29567 4.37159 4.42069 4.55076 4.61390 4.66609 4.69904 4.73486 4.75666 4.93766 4.95978 4.98722 5.01282 5.14391 5.47620 5.51773 5.62690 5.79116 5.86786 6.08823 6.20168 6.21482 6.73412 6.86951 7.14558 7.40904 8.91118 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.029193 B = 0.003064 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.915932 B = 9135.243668 C = 9408.151991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.166 3.834 3 C -0.234 4.234 4 C 0.174 3.826 5 C 0.109 3.891 6 N -0.687 5.687 7 C 0.081 3.919 8 C 0.018 3.982 9 H 0.119 0.881 10 C 0.251 3.749 11 N -0.503 5.503 12 C 0.040 3.960 13 C -0.542 4.542 14 H 0.052 0.948 15 C 0.013 3.987 16 N -0.922 5.922 17 Si 0.947 3.053 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.281 1.281 21 N -0.527 5.527 22 C 0.302 3.698 23 C -0.081 4.081 24 N -0.542 5.542 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.167 0.833 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.335 0.665 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.004 0.996 35 H 0.038 0.962 36 H 0.264 0.736 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.852 -16.055 -12.170 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.020 3.980 3 C -0.256 4.256 4 C 0.028 3.972 5 C -0.020 4.020 6 N -0.319 5.319 7 C -0.049 4.049 8 C -0.004 4.004 9 H 0.136 0.864 10 C -0.065 4.065 11 N -0.181 5.181 12 C 0.001 3.999 13 C -0.580 4.580 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.562 5.562 17 Si 0.773 3.227 18 H -0.189 1.189 19 H -0.206 1.206 20 H -0.207 1.207 21 N -0.244 5.244 22 C 0.035 3.965 23 C -0.139 4.139 24 N -0.258 5.258 25 H 0.119 0.881 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.185 0.815 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.152 0.848 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.023 0.977 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.130 -16.828 -11.338 23.640 hybrid contribution -0.241 1.929 0.726 2.075 sum -12.371 -14.899 -10.611 22.082 Atomic orbital electron populations 1.20876 0.85393 1.04907 1.04792 1.22337 0.99214 0.87826 0.88587 1.22889 0.95394 1.01660 1.05701 1.21841 0.91813 0.93947 0.89577 1.20886 0.99566 0.90707 0.90846 1.60439 1.25955 1.35860 1.09608 1.21957 0.99514 0.89567 0.93820 1.19232 0.86362 1.01528 0.93308 0.86359 1.29577 0.93666 0.90823 0.92424 1.80960 1.14788 1.11397 1.10928 1.18975 0.93773 0.90880 0.96286 1.21537 1.28285 1.13328 0.94839 0.92962 1.25690 0.96425 0.95918 1.00620 1.70017 1.34637 1.18159 1.33375 0.85774 0.78123 0.78100 0.80730 1.18919 1.20648 1.20672 1.68136 1.42263 0.98793 1.15158 1.23885 0.86977 0.95704 0.89896 1.20638 0.99880 0.88650 1.04757 1.68172 1.09931 1.31251 1.16495 0.88145 0.89953 0.88458 0.81535 0.90760 0.88070 0.84785 0.93637 0.87212 0.97744 0.94395 0.92671 0.88335 0.89312 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.22 71.23 0.73 -0.50 16 2 C 0.17 3.31 6.82 42.58 0.29 3.60 16 3 C -0.23 -4.57 9.52 22.44 0.21 -4.35 16 4 C 0.17 4.03 6.34 42.56 0.27 4.30 16 5 C 0.11 2.25 6.04 85.56 0.52 2.77 16 6 N -0.69 -17.19 6.49 -517.96 -3.36 -20.55 16 7 C 0.08 2.17 5.12 86.30 0.44 2.61 16 8 C 0.02 0.62 2.42 -12.60 -0.03 0.59 16 9 H 0.12 4.06 8.14 -2.38 -0.02 4.04 16 10 C 0.25 9.84 12.97 89.46 1.16 11.00 16 11 N -0.50 -21.35 18.53 19.98 0.37 -20.98 16 12 C 0.04 1.80 4.42 29.85 0.13 1.93 16 13 C -0.54 -28.61 8.60 25.60 0.22 -28.39 16 14 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 15 C 0.01 0.69 5.46 84.66 0.46 1.15 16 16 N -0.92 -52.60 13.29 21.45 0.28 -52.32 16 17 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 N -0.53 -13.75 10.27 -176.02 -1.81 -15.56 16 22 C 0.30 7.24 7.64 138.75 1.06 8.30 16 23 C -0.08 -1.35 10.32 71.24 0.74 -0.62 16 24 N -0.54 -12.73 10.27 -176.01 -1.81 -14.54 16 25 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 0.85 8.10 -2.38 -0.02 0.83 16 28 H 0.17 2.32 8.06 -2.92 -0.02 2.30 16 29 H 0.07 1.22 8.06 -2.39 -0.02 1.20 16 30 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.33 8.80 7.80 -89.69 -0.70 8.10 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -66.99 343.07 2.26 -64.73 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.35 Total: 11.42 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 6.20 Total: 2.38 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -6.32 Total: -123.94 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.99 2.26 -64.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579623161.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.398 kcal (2) G-P(sol) polarization free energy of solvation -66.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds