Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47181 * 2 1 4 4 C 1.53004 * 109.47343 * 240.00144 * 2 1 3 5 5 C 1.52998 * 109.47525 * 120.00290 * 2 1 3 6 6 N 1.46498 * 109.47152 * 60.00035 * 5 2 1 7 7 C 1.46506 * 119.99921 * 270.00210 * 6 5 2 8 8 C 1.50704 * 109.46877 * 270.00124 * 7 6 5 9 9 H 1.08001 * 120.00350 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99614 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00337 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00095 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47176 * 59.99959 * 12 10 8 14 14 H 1.48496 * 109.47685 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47262 * 300.00444 * 12 10 8 16 16 C 1.38535 * 120.00228 * 90.00495 * 6 5 2 17 17 C 1.39698 * 120.49995 * 4.99494 * 16 6 5 18 18 C 1.39253 * 118.18967 * 179.97438 * 17 16 6 19 19 C 1.43205 * 120.52397 * 180.02562 * 18 17 16 20 20 N 6.31725 * 143.66433 * 202.56759 * 2 1 3 21 21 N 1.33464 * 118.95580 * 0.28081 * 18 17 16 22 22 C 1.31543 * 120.89425 * 359.43241 * 21 18 17 23 23 N 1.31848 * 122.01622 * 0.58091 * 22 21 18 24 24 H 1.08998 * 109.47346 * 299.99386 * 1 2 3 25 25 H 1.08997 * 109.47795 * 60.00185 * 1 2 3 26 26 H 1.09008 * 109.46824 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47296 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46605 * 300.00544 * 3 2 1 29 29 H 1.08998 * 109.46479 * 60.00083 * 3 2 1 30 30 H 1.08998 * 109.46897 * 300.00158 * 4 2 1 31 31 H 1.08999 * 109.46514 * 59.99442 * 4 2 1 32 32 H 1.08994 * 109.47682 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46870 * 299.99737 * 5 2 1 34 34 H 1.08998 * 109.47412 * 180.02562 * 5 2 1 35 35 H 1.09001 * 109.46779 * 29.99528 * 7 6 5 36 36 H 1.08996 * 109.47199 * 149.99957 * 7 6 5 37 37 H 0.96998 * 119.99995 * 179.97438 * 11 10 8 38 38 H 1.08006 * 120.90624 * 0.02562 * 17 16 6 39 39 H 1.08004 * 118.99044 * 180.27229 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.5518 -2.1025 1.2491 7 6 0.2717 -2.4269 1.8835 8 6 0.5026 -2.7750 3.3315 9 1 1.5028 -2.7560 3.7387 10 6 -0.5631 -3.1166 4.1368 11 7 -1.7812 -3.1383 3.6415 12 14 -0.2769 -3.5487 5.9315 13 1 0.3416 -2.3914 6.6268 14 1 -1.5745 -3.8762 6.5749 15 1 0.6300 -4.7213 6.0198 16 6 2.3005 -3.1019 0.6493 17 6 3.5688 -2.8249 0.1332 18 6 4.2797 -3.8655 -0.4590 19 6 5.5844 -3.6375 -1.0036 20 7 6.6189 -3.4564 -1.4365 21 7 3.7239 -5.0776 -0.5157 22 6 2.5285 -5.2967 -0.0123 23 7 1.8232 -4.3388 0.5564 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6765 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7209 -1.2496 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7209 1.2494 35 1 -0.3944 -1.5666 1.8185 36 1 -0.1816 -3.2768 1.3734 37 1 -2.5309 -3.3790 4.2080 38 1 3.9869 -1.8308 0.1928 39 1 2.1099 -6.2905 -0.0711 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583575590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = 81.059545 kcal Electronic energy + Delta-G solvation = -21427.458343 eV Core-core repulsion = 18370.677898 eV Total energy + Delta-G solvation = -3056.780444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76255 -38.36395 -36.65292 -35.05251 -32.96854 -32.59099 -31.01055 -28.04125 -27.19672 -26.91766 -25.88543 -24.87364 -23.29732 -21.87991 -19.25560 -18.40676 -17.26253 -16.60316 -16.06361 -15.19378 -15.15599 -14.84118 -14.45963 -14.35417 -14.22694 -13.71188 -13.20844 -13.20180 -12.95964 -12.78783 -12.51692 -12.25004 -12.04208 -11.62424 -11.45884 -11.36536 -11.25854 -10.92514 -10.80023 -10.63055 -10.51958 -10.39168 -10.25066 -10.04150 -9.69987 -9.39158 -8.83274 -8.50409 -7.29755 -6.12647 -4.18900 0.82675 1.61652 2.50914 3.10311 3.25531 3.30709 3.31365 3.38575 3.65537 4.29563 4.36654 4.67327 4.87244 4.92169 4.96087 5.12197 5.15182 5.21377 5.47397 5.61238 5.63429 5.66907 5.68646 5.84974 5.89901 6.02768 6.04568 6.14286 6.22292 6.31618 6.43386 6.47995 6.62795 6.84483 7.22683 7.31899 7.38408 7.70180 7.89328 7.99681 8.11677 8.65103 8.85159 9.46082 10.93626 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.014128 B = 0.006787 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.341980 B = 4124.710440 C = 5392.046667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.138 4.138 4 C -0.141 4.141 5 C 0.127 3.873 6 N -0.557 5.557 7 C 0.245 3.755 8 C -0.530 4.530 9 H 0.055 0.945 10 C 0.066 3.934 11 N -0.892 5.892 12 Si 0.895 3.105 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.458 3.542 17 C -0.253 4.253 18 C 0.254 3.746 19 C 0.280 3.720 20 N -0.400 5.400 21 N -0.558 5.558 22 C 0.346 3.654 23 N -0.544 5.544 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.264 0.736 38 H 0.145 0.855 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 5.239 -7.184 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.198 4.198 5 C 0.003 3.997 6 N -0.262 5.262 7 C 0.126 3.874 8 C -0.569 4.569 9 H 0.073 0.927 10 C -0.136 4.136 11 N -0.530 5.530 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.211 3.789 17 C -0.287 4.287 18 C 0.112 3.888 19 C -0.038 4.038 20 N -0.077 5.077 21 N -0.281 5.281 22 C 0.055 3.945 23 N -0.268 5.268 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.162 0.838 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.172 4.777 -7.718 10.976 hybrid contribution -0.022 0.398 1.351 1.408 sum 6.149 5.174 -6.368 10.253 Atomic orbital electron populations 1.21962 0.93738 1.03085 1.01122 1.21035 0.96991 0.95203 0.95649 1.21805 1.00646 0.95170 1.01927 1.21985 1.00379 1.00652 0.96769 1.21648 0.98546 0.81510 0.98039 1.47265 1.22374 1.03707 1.52899 1.19603 0.77667 0.97853 0.92232 1.21367 0.93673 1.47184 0.94651 0.92659 1.24866 0.94950 0.95197 0.98631 1.69903 0.98665 1.48100 1.36354 0.86607 0.77426 0.78983 0.84683 1.20341 1.21165 1.20225 1.18410 0.86680 0.87843 0.85983 1.22088 0.96704 1.01147 1.08767 1.16133 0.87514 0.90515 0.94677 1.25051 0.92109 0.93111 0.93515 1.81195 1.10721 1.07983 1.07816 1.68285 1.14686 1.20759 1.24398 1.24618 0.85045 0.98184 0.86646 1.68123 1.37400 0.99994 1.21281 0.92353 0.93476 0.91262 0.92812 0.92599 0.92363 0.92517 0.93004 0.92852 0.89176 0.91312 0.93983 0.92906 0.92585 0.83767 0.78561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.23 37.15 0.27 -1.72 16 2 C -0.09 -1.10 0.84 -154.51 -0.13 -1.23 16 3 C -0.14 -1.40 8.47 37.16 0.31 -1.09 16 4 C -0.14 -1.73 6.98 37.16 0.26 -1.47 16 5 C 0.13 1.84 4.53 -4.04 -0.02 1.82 16 6 N -0.56 -10.11 2.06 -175.03 -0.36 -10.47 16 7 C 0.24 5.54 4.14 -5.19 -0.02 5.51 16 8 C -0.53 -13.55 9.39 -34.44 -0.32 -13.87 16 9 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -24.50 13.29 55.43 0.74 -23.76 16 12 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 C 0.46 8.06 5.86 -154.83 -0.91 7.15 16 17 C -0.25 -3.75 7.13 -38.66 -0.28 -4.03 16 18 C 0.25 3.82 6.61 -84.85 -0.56 3.26 16 19 C 0.28 4.11 15.59 -22.47 -0.35 3.75 16 20 N -0.40 -6.20 18.54 41.83 0.78 -5.43 16 21 N -0.56 -8.76 10.38 -12.63 -0.13 -8.89 16 22 C 0.35 5.40 12.27 -92.32 -1.13 4.27 16 23 N -0.54 -10.14 9.21 -13.85 -0.13 -10.27 16 24 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.15 5.99 -51.92 -0.31 0.84 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.82 6.10 -51.93 -0.32 0.50 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.60 6.69 -51.93 -0.35 0.25 16 33 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 34 H 0.07 0.87 6.05 -51.93 -0.31 0.56 16 35 H 0.04 0.98 6.05 -51.93 -0.31 0.66 16 36 H 0.05 1.34 7.33 -51.93 -0.38 0.95 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.14 1.82 5.10 -52.48 -0.27 1.55 16 39 H 0.20 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 323.19 15.07 4.87 4.87 Total: -1.00 -28.00 323.19 -7.41 -35.41 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.17 Total: -1.07 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.98 Total: 4.02 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.89 Total: -58.82 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.00 -7.41 -35.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583575590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.469 kcal (2) G-P(sol) polarization free energy of solvation -28.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds