Wall clock time and date at job start Mon Mar 30 2020 01:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47181 * 2 1 4 4 C 1.53004 * 109.47343 * 240.00144 * 2 1 3 5 5 C 1.52998 * 109.47525 * 120.00290 * 2 1 3 6 6 N 1.46498 * 109.47152 * 60.00035 * 5 2 1 7 7 C 1.46506 * 119.99921 * 270.00210 * 6 5 2 8 8 C 1.50704 * 109.46877 * 270.00124 * 7 6 5 9 9 H 1.08001 * 120.00350 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99614 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00337 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00095 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47176 * 59.99959 * 12 10 8 14 14 H 1.48496 * 109.47685 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47262 * 300.00444 * 12 10 8 16 16 C 1.38535 * 120.00228 * 90.00495 * 6 5 2 17 17 C 1.39698 * 120.49995 * 4.99494 * 16 6 5 18 18 C 1.39253 * 118.18967 * 179.97438 * 17 16 6 19 19 C 1.43205 * 120.52397 * 180.02562 * 18 17 16 20 20 N 6.31725 * 143.66433 * 202.56759 * 2 1 3 21 21 N 1.33464 * 118.95580 * 0.28081 * 18 17 16 22 22 C 1.31543 * 120.89425 * 359.43241 * 21 18 17 23 23 N 1.31848 * 122.01622 * 0.58091 * 22 21 18 24 24 H 1.08998 * 109.47346 * 299.99386 * 1 2 3 25 25 H 1.08997 * 109.47795 * 60.00185 * 1 2 3 26 26 H 1.09008 * 109.46824 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47296 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46605 * 300.00544 * 3 2 1 29 29 H 1.08998 * 109.46479 * 60.00083 * 3 2 1 30 30 H 1.08998 * 109.46897 * 300.00158 * 4 2 1 31 31 H 1.08999 * 109.46514 * 59.99442 * 4 2 1 32 32 H 1.08994 * 109.47682 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46870 * 299.99737 * 5 2 1 34 34 H 1.08998 * 109.47412 * 180.02562 * 5 2 1 35 35 H 1.09001 * 109.46779 * 29.99528 * 7 6 5 36 36 H 1.08996 * 109.47199 * 149.99957 * 7 6 5 37 37 H 0.96998 * 119.99995 * 179.97438 * 11 10 8 38 38 H 1.08006 * 120.90624 * 0.02562 * 17 16 6 39 39 H 1.08004 * 118.99044 * 180.27229 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.5518 -2.1025 1.2491 7 6 0.2717 -2.4269 1.8835 8 6 0.5026 -2.7750 3.3315 9 1 1.5028 -2.7560 3.7387 10 6 -0.5631 -3.1166 4.1368 11 7 -1.7812 -3.1383 3.6415 12 14 -0.2769 -3.5487 5.9315 13 1 0.3416 -2.3914 6.6268 14 1 -1.5745 -3.8762 6.5749 15 1 0.6300 -4.7213 6.0198 16 6 2.3005 -3.1019 0.6493 17 6 3.5688 -2.8249 0.1332 18 6 4.2797 -3.8655 -0.4590 19 6 5.5844 -3.6375 -1.0036 20 7 6.6189 -3.4564 -1.4365 21 7 3.7239 -5.0776 -0.5157 22 6 2.5285 -5.2967 -0.0123 23 7 1.8232 -4.3388 0.5564 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6765 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7209 -1.2496 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7209 1.2494 35 1 -0.3944 -1.5666 1.8185 36 1 -0.1816 -3.2768 1.3734 37 1 -2.5309 -3.3790 4.2080 38 1 3.9869 -1.8308 0.1928 39 1 2.1099 -6.2905 -0.0711 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583575590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:27 Heat of formation + Delta-G solvation = 67.544550 kcal Electronic energy + Delta-G solvation = -21428.044397 eV Core-core repulsion = 18370.677898 eV Total energy + Delta-G solvation = -3057.366498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.04458 -39.56255 -37.86584 -36.34486 -34.79149 -33.92234 -32.42199 -29.61484 -28.13229 -28.07204 -27.18177 -26.28324 -24.77456 -23.37386 -20.45135 -19.57083 -18.73123 -18.40749 -17.33774 -16.60489 -16.48523 -16.35449 -15.68389 -15.59240 -15.41732 -14.90831 -14.50964 -14.39755 -14.24003 -14.17624 -14.02788 -13.44909 -13.17097 -12.99553 -12.91779 -12.59256 -12.48724 -12.47065 -12.42282 -12.09273 -11.76772 -11.68219 -11.54727 -11.39918 -11.27347 -10.76140 -10.53157 -10.14605 -8.74844 -8.09407 -6.25993 -0.40278 0.33467 1.31388 1.41808 1.43621 1.50462 1.89023 2.04336 2.39497 2.46421 3.05174 3.17102 3.47272 3.65941 3.84402 3.88922 3.99816 4.06836 4.28197 4.50308 4.51940 4.61118 4.76983 4.81846 4.93043 4.97133 5.07177 5.10476 5.12049 5.23230 5.25675 5.37213 5.45299 5.48706 5.55809 5.74005 5.87237 6.13238 6.16817 6.35907 6.57673 6.85241 7.37343 7.44432 8.91727 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.014128 B = 0.006787 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.341980 B = 4124.710440 C = 5392.046667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.132 4.132 4 C -0.135 4.135 5 C 0.122 3.878 6 N -0.565 5.565 7 C 0.268 3.732 8 C -0.536 4.536 9 H 0.048 0.952 10 C 0.019 3.981 11 N -0.923 5.923 12 Si 0.953 3.047 13 H -0.269 1.269 14 H -0.283 1.283 15 H -0.278 1.278 16 C 0.445 3.555 17 C -0.237 4.237 18 C 0.256 3.744 19 C 0.294 3.706 20 N -0.409 5.409 21 N -0.561 5.561 22 C 0.346 3.654 23 N -0.585 5.585 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.031 0.969 36 H 0.019 0.981 37 H 0.265 0.735 38 H 0.171 0.829 39 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.160 6.123 -7.472 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 C -0.190 4.190 4 C -0.192 4.192 5 C 0.000 4.000 6 N -0.272 5.272 7 C 0.148 3.852 8 C -0.575 4.575 9 H 0.066 0.934 10 C -0.181 4.181 11 N -0.563 5.563 12 Si 0.779 3.221 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.204 1.204 16 C 0.199 3.801 17 C -0.270 4.270 18 C 0.113 3.887 19 C -0.024 4.024 20 N -0.086 5.086 21 N -0.283 5.283 22 C 0.056 3.944 23 N -0.309 5.309 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.188 0.812 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.030 5.666 -8.026 12.689 hybrid contribution -0.566 0.081 1.371 1.485 sum 7.464 5.747 -6.655 11.534 Atomic orbital electron populations 1.21900 0.95282 1.00937 1.01416 1.20994 0.95637 0.96773 0.94839 1.21763 1.01684 0.92983 1.02544 1.21932 1.01237 0.99099 0.96977 1.21874 0.99860 0.79664 0.98640 1.47059 1.21317 1.05300 1.53476 1.18968 0.79615 0.95909 0.90734 1.21665 0.93177 1.46441 0.96174 0.93369 1.25594 0.94808 0.95334 1.02337 1.70012 0.99344 1.49284 1.37630 0.85697 0.77259 0.78726 0.80453 1.19398 1.20860 1.20399 1.18628 0.87566 0.87544 0.86387 1.22153 0.95202 1.02209 1.07394 1.16183 0.87594 0.90431 0.94492 1.24784 0.91680 0.92759 0.93141 1.81224 1.10924 1.08324 1.08109 1.68342 1.14617 1.21150 1.24215 1.25126 0.84807 0.98688 0.85733 1.68108 1.38945 1.01148 1.22713 0.93342 0.91830 0.94582 0.91104 0.91482 0.92330 0.95127 0.91813 0.91295 0.90384 0.88864 0.95131 0.96273 0.92642 0.81215 0.75893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 7.23 71.98 0.52 -3.36 16 2 C -0.08 -1.91 0.84 -52.18 -0.04 -1.96 16 3 C -0.13 -2.30 8.47 71.98 0.61 -1.69 16 4 C -0.14 -3.06 6.98 71.98 0.50 -2.55 16 5 C 0.12 3.43 4.53 86.38 0.39 3.82 16 6 N -0.57 -20.65 2.06 -707.68 -1.46 -22.11 16 7 C 0.27 12.59 4.14 85.63 0.35 12.95 16 8 C -0.54 -27.91 9.39 25.60 0.24 -27.67 16 9 H 0.05 2.53 7.81 -2.91 -0.02 2.50 16 10 C 0.02 1.00 5.46 84.65 0.46 1.46 16 11 N -0.92 -51.95 13.29 21.45 0.28 -51.66 16 12 Si 0.95 42.48 29.54 68.60 2.03 44.51 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 C 0.44 15.49 5.86 133.21 0.78 16.27 16 17 C -0.24 -6.56 7.13 22.87 0.16 -6.40 16 18 C 0.26 7.18 6.61 40.39 0.27 7.45 16 19 C 0.29 7.92 15.59 88.33 1.38 9.29 16 20 N -0.41 -11.70 18.54 19.00 0.35 -11.35 16 21 N -0.56 -16.75 10.38 -193.87 -2.01 -18.76 16 22 C 0.35 10.57 12.27 180.94 2.22 12.79 16 23 N -0.58 -21.93 9.21 -197.72 -1.82 -23.75 16 24 H 0.05 1.42 8.08 -2.39 -0.02 1.40 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.24 5.99 -2.38 -0.01 1.22 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.03 0.85 6.10 -2.39 -0.01 0.84 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.33 6.69 -2.39 -0.02 1.31 16 33 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 34 H 0.09 2.12 6.05 -2.39 -0.01 2.11 16 35 H 0.03 1.50 6.05 -2.39 -0.01 1.48 16 36 H 0.02 1.02 7.33 -2.39 -0.02 1.01 16 37 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.17 3.72 5.10 -2.91 -0.01 3.71 16 39 H 0.23 5.23 8.06 -2.91 -0.02 5.21 16 Total: -1.00 -60.82 323.19 6.28 -54.54 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.06 Total: 8.18 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 7.85 Total: 20.41 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -4.65 Total: -127.64 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -60.82 6.28 -54.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583575590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.087 kcal (2) G-P(sol) polarization free energy of solvation -60.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds