Wall clock time and date at job start Mon Mar 30 2020 01:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48497 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47170 * 300.00109 * 3 2 1 6 6 H 1.48500 * 109.47108 * 60.00092 * 3 2 1 7 7 C 1.37875 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00227 * 172.59054 * 7 2 1 9 9 C 1.50700 * 119.99930 * 352.58359 * 7 2 1 10 10 C 1.53001 * 115.54913 * 84.66504 * 9 7 2 11 11 N 1.46504 * 109.47187 * 39.67544 * 10 9 7 12 12 C 1.38622 * 120.00271 * 179.24615 * 11 10 9 13 13 C 1.39175 * 120.48389 * 359.72662 * 12 11 10 14 14 C 1.39128 * 118.26748 * 180.27218 * 13 12 11 15 15 N 1.38632 * 120.48194 * 179.97438 * 14 13 12 16 16 C 1.46500 * 120.00260 * 0.02562 * 15 14 13 17 17 C 1.52996 * 117.50563 * 223.75073 * 16 15 14 18 18 C 1.53001 * 117.50137 * 155.08274 * 16 15 14 19 19 N 1.33193 * 119.03310 * 359.97438 * 14 13 12 20 20 C 1.31727 * 120.87937 * 0.02562 * 19 14 13 21 21 N 1.31763 * 121.91307 * 359.97438 * 20 19 14 22 22 C 1.53004 * 117.51793 * 230.36285 * 9 7 2 23 23 C 1.53000 * 117.50143 * 298.99280 * 9 7 2 24 24 H 0.96995 * 120.00057 * 5.02117 * 1 2 3 25 25 H 1.09002 * 109.47034 * 279.67778 * 10 9 7 26 26 H 1.08996 * 109.47305 * 159.67355 * 10 9 7 27 27 H 0.97002 * 119.99943 * 359.24764 * 11 10 9 28 28 H 1.08007 * 120.86034 * 0.24495 * 13 12 11 29 29 H 0.96995 * 120.00160 * 180.02562 * 15 14 13 30 30 H 1.09003 * 115.54662 * 9.42184 * 16 15 14 31 31 H 1.09004 * 117.49607 * 359.97438 * 17 16 15 32 32 H 1.08990 * 117.50399 * 145.02234 * 17 16 15 33 33 H 1.08994 * 117.50589 * 214.98076 * 18 16 15 34 34 H 1.09005 * 117.49534 * 0.02562 * 18 16 15 35 35 H 1.07997 * 119.04632 * 179.97438 * 20 19 14 36 36 H 1.09000 * 117.49892 * 214.97270 * 22 9 7 37 37 H 1.08994 * 117.49849 * 359.97438 * 22 9 7 38 38 H 1.08999 * 117.49834 * 359.97438 * 23 9 7 39 39 H 1.08996 * 117.50169 * 144.97434 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0778 -1.1980 -0.1201 9 6 1.2605 -2.4936 0.1696 10 6 0.6704 -3.0875 -1.1110 11 7 1.6158 -2.9044 -2.2151 12 6 1.3049 -3.3790 -3.4799 13 6 0.0999 -4.0358 -3.7110 14 6 -0.1625 -4.4982 -4.9967 15 7 -1.3483 -5.1591 -5.2780 16 6 -2.3361 -5.3746 -4.2178 17 6 -2.9929 -6.7539 -4.1338 18 6 -3.7964 -5.5526 -4.6384 19 7 0.7421 -4.2966 -5.9533 20 6 1.8715 -3.6700 -5.6945 21 7 2.1569 -3.2174 -4.4904 22 6 1.7748 -3.4699 1.2294 23 6 0.4771 -2.6954 1.4682 24 1 -0.4850 0.8368 -0.0735 25 1 -0.2664 -2.5829 -1.3475 26 1 0.4834 -4.1514 -0.9656 27 1 2.4595 -2.4511 -2.0611 28 1 -0.6128 -4.1832 -2.9128 29 1 -1.5239 -5.4789 -6.1767 30 1 -2.1424 -4.8516 -3.2813 31 1 -2.6903 -7.5010 -4.8676 32 1 -3.2316 -7.1381 -3.1422 33 1 -4.5633 -5.1472 -3.9785 34 1 -4.0220 -5.5098 -5.7040 35 1 2.5843 -3.5231 -6.4924 36 1 1.6928 -4.5353 1.0143 37 1 2.6518 -3.1726 1.8043 38 1 0.5002 -1.8884 2.2005 39 1 -0.4589 -3.2509 1.4102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591158025.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:02 Heat of formation + Delta-G solvation = 91.909821 kcal Electronic energy + Delta-G solvation = -20668.431443 eV Core-core repulsion = 17612.121502 eV Total energy + Delta-G solvation = -3056.309941 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66084 -39.07198 -38.73235 -36.44055 -35.01865 -34.01791 -32.25071 -30.58634 -27.88205 -27.21926 -25.08653 -23.43982 -23.22874 -22.87515 -22.39100 -21.15772 -19.14643 -18.81692 -17.88699 -16.97640 -16.69120 -16.30846 -16.20555 -15.99695 -15.65345 -15.31988 -15.00609 -14.75516 -14.39447 -14.30318 -13.60361 -13.46902 -13.35719 -12.96946 -12.88233 -12.40354 -12.36995 -12.08481 -11.79148 -11.54466 -11.44624 -11.27187 -11.01293 -10.81477 -10.47389 -10.06445 -9.99112 -9.03995 -8.74992 -8.13632 -6.24490 0.43180 0.75216 1.37688 1.42916 1.51188 1.98690 2.34565 2.42689 2.91733 3.15969 3.24334 3.48147 3.60860 3.79058 3.94910 4.02052 4.08119 4.15027 4.24206 4.51550 4.58005 4.65952 4.69167 4.71628 4.78207 4.82566 4.99015 5.03150 5.04915 5.23173 5.26060 5.39282 5.54175 5.63842 5.74826 5.86905 6.03275 6.35436 6.53183 6.75237 6.82832 6.94643 7.44966 7.59940 8.93546 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.004991 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.088213 B = 5609.009126 C = 6260.493116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.036 3.964 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.505 4.505 8 H 0.054 0.946 9 C 0.000 4.000 10 C 0.186 3.814 11 N -0.682 5.682 12 C 0.446 3.554 13 C -0.377 4.377 14 C 0.456 3.544 15 N -0.677 5.677 16 C 0.059 3.941 17 C -0.181 4.181 18 C -0.176 4.176 19 N -0.632 5.632 20 C 0.367 3.633 21 N -0.638 5.638 22 C -0.185 4.185 23 C -0.153 4.153 24 H 0.259 0.741 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.406 0.594 28 H 0.136 0.864 29 H 0.412 0.588 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.224 0.776 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 -11.591 -7.968 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.543 4.543 8 H 0.072 0.928 9 C 0.000 4.000 10 C 0.062 3.938 11 N -0.309 5.309 12 C 0.204 3.796 13 C -0.411 4.411 14 C 0.216 3.784 15 N -0.308 5.308 16 C -0.047 4.047 17 C -0.220 4.220 18 C -0.214 4.214 19 N -0.363 5.363 20 C 0.076 3.924 21 N -0.368 5.368 22 C -0.222 4.222 23 C -0.191 4.191 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.243 0.757 28 H 0.154 0.846 29 H 0.249 0.751 30 H 0.139 0.861 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.240 0.760 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.123 -11.365 -8.191 14.916 hybrid contribution -0.025 1.252 0.555 1.370 sum -5.148 -10.113 -7.635 13.677 Atomic orbital electron populations 1.70054 1.06909 1.27167 1.49499 1.25533 0.95387 1.01469 0.94157 0.85776 0.79554 0.80756 0.77188 1.19106 1.21473 1.20818 1.20548 0.92974 0.89854 1.50884 0.92757 1.19094 0.99629 0.94425 0.86898 1.20692 0.90673 0.96852 0.85603 1.44716 1.22466 1.59062 1.04667 1.18590 0.88643 0.86101 0.86289 1.21276 1.02020 1.18705 0.99111 1.18233 0.86225 0.85627 0.88342 1.43675 1.14575 1.60026 1.12478 1.21736 0.88268 1.01882 0.92836 1.23538 1.02832 0.91386 1.04214 1.23492 0.92998 1.01754 1.03164 1.67953 1.05930 1.27290 1.35117 1.24929 0.90703 0.84850 0.91932 1.67981 1.35986 1.31270 1.01565 1.23088 0.97374 0.96488 1.05264 1.22438 0.94035 1.01170 1.01495 0.93204 0.94282 0.92816 0.75735 0.84612 0.75089 0.86055 0.87867 0.86924 0.86832 0.87567 0.75974 0.88963 0.90358 0.92074 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.25 12.98 21.45 0.28 -48.97 16 2 C 0.04 1.90 5.38 84.65 0.46 2.36 16 3 Si 0.94 42.62 29.55 68.60 2.03 44.64 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.50 -25.71 7.41 25.60 0.19 -25.52 16 8 H 0.05 2.79 7.83 -2.91 -0.02 2.77 16 9 C 0.00 0.01 1.71 -52.93 -0.09 -0.08 16 10 C 0.19 7.82 5.00 86.38 0.43 8.25 16 11 N -0.68 -28.65 5.51 -344.78 -1.90 -30.55 16 12 C 0.45 17.75 7.70 132.97 1.02 18.77 16 13 C -0.38 -13.49 8.63 22.71 0.20 -13.30 16 14 C 0.46 14.63 7.70 132.95 1.02 15.66 16 15 N -0.68 -16.59 5.72 -324.27 -1.86 -18.45 16 16 C 0.06 1.24 6.32 44.99 0.28 1.52 16 17 C -0.18 -2.76 10.46 30.62 0.32 -2.43 16 18 C -0.18 -2.66 10.46 30.62 0.32 -2.34 16 19 N -0.63 -20.27 10.47 -197.84 -2.07 -22.34 16 20 C 0.37 11.62 12.28 180.91 2.22 13.84 16 21 N -0.64 -24.16 10.47 -197.83 -2.07 -26.23 16 22 C -0.19 -7.25 9.88 30.60 0.30 -6.94 16 23 C -0.15 -6.59 9.52 30.59 0.29 -6.30 16 24 H 0.26 13.74 8.32 -92.71 -0.77 12.97 16 25 H 0.04 1.82 8.01 -2.39 -0.02 1.80 16 26 H 0.05 2.01 7.73 -2.39 -0.02 1.99 16 27 H 0.41 18.00 7.54 -92.71 -0.70 17.30 16 28 H 0.14 4.64 4.78 -2.91 -0.01 4.63 16 29 H 0.41 8.62 8.95 -92.71 -0.83 7.79 16 30 H 0.12 2.87 5.94 -2.39 -0.01 2.86 16 31 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 33 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.22 5.04 8.06 -2.91 -0.02 5.02 16 36 H 0.09 3.13 8.08 -2.39 -0.02 3.12 16 37 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -59.76 330.70 0.93 -58.83 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: -0.45 Total: 39.59 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 6.97 Total: 3.48 kcal Atomic # 7 Polarization: -138.93 SS G_CDS: -7.62 Total: -146.54 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -59.76 0.93 -58.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591158025.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.741 kcal (2) G-P(sol) polarization free energy of solvation -59.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds