Wall clock time and date at job start Mon Mar 30 2020 01:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 102.99851 * 2 1 4 4 C 1.53006 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47032 * 305.00235 * 4 3 2 6 6 O 1.42903 * 109.46769 * 64.99902 * 4 3 2 7 7 C 1.52997 * 109.47556 * 184.99785 * 4 3 2 8 8 N 1.46896 * 109.47223 * 179.97438 * 7 4 3 9 9 C 1.46903 * 110.99574 * 179.97438 * 8 7 4 10 10 C 1.53034 * 109.46219 * 275.06706 * 9 8 7 11 11 C 1.53193 * 109.31662 * 178.61864 * 10 9 8 12 12 N 1.46924 * 108.77389 * 54.63075 * 11 10 9 13 13 C 1.36938 * 120.62597 * 126.41557 * 12 11 10 14 14 H 1.08006 * 120.00476 * 331.83481 * 13 12 11 15 15 C 1.38816 * 120.00080 * 151.82752 * 13 12 11 16 16 N 1.31621 * 119.99717 * 343.07800 * 15 13 12 17 17 Si 1.86802 * 120.00153 * 163.06751 * 15 13 12 18 18 H 1.48503 * 109.46967 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46754 * 120.00406 * 17 15 13 20 20 H 1.48498 * 109.47130 * 240.00464 * 17 15 13 21 21 C 1.46922 * 118.74480 * 306.40051 * 12 11 10 22 22 C 1.53040 * 109.45656 * 155.00246 * 9 8 7 23 23 H 1.08999 * 109.46935 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46999 * 59.99949 * 1 2 3 25 25 H 1.09003 * 109.46708 * 299.99971 * 1 2 3 26 26 H 1.08994 * 109.47076 * 299.99643 * 3 2 1 27 27 H 1.08992 * 109.47379 * 60.00092 * 3 2 1 28 28 H 0.96698 * 114.00143 * 59.99975 * 6 4 3 29 29 H 1.09003 * 109.46857 * 300.00502 * 7 4 3 30 30 H 1.09001 * 109.46711 * 59.99569 * 7 4 3 31 31 H 1.00895 * 110.99984 * 303.95521 * 8 7 4 32 32 H 1.08998 * 109.46417 * 35.03407 * 9 8 7 33 33 H 1.09003 * 109.50010 * 298.56921 * 10 9 8 34 34 H 1.09000 * 109.49704 * 58.66602 * 10 9 8 35 35 H 1.09009 * 109.58218 * 294.85038 * 11 10 9 36 36 H 1.08992 * 109.70950 * 174.49703 * 11 10 9 37 37 H 0.97005 * 119.99515 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.58094 * 293.81603 * 21 12 11 39 39 H 1.08996 * 109.70607 * 173.46260 * 21 12 11 40 40 H 1.08998 * 109.50214 * 301.33935 * 22 9 8 41 41 H 1.09003 * 109.49721 * 61.43330 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1694 1.3953 0.8427 6 8 4.2803 1.4278 -1.2202 7 6 4.0871 3.4253 0.1263 8 7 5.5467 3.5908 0.1275 9 6 5.9157 5.0077 0.2464 10 6 5.9076 5.6548 -1.1403 11 6 6.2591 7.1401 -1.0085 12 7 7.5366 7.2620 -0.2931 13 6 8.5715 7.9795 -0.8309 14 1 8.6631 8.0748 -1.9029 15 6 9.5030 8.5847 0.0017 16 7 9.2293 8.7608 1.2770 17 14 11.1449 9.1487 -0.6878 18 1 11.2055 8.8380 -2.1388 19 1 11.2883 10.6133 -0.4892 20 1 12.2460 8.4435 0.0162 21 6 7.6825 6.5999 1.0103 22 6 7.3150 5.1207 0.8558 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 1.8031 2.2370 -0.8900 27 1 1.8031 2.2371 0.8899 28 1 3.9436 1.8669 -2.0132 29 1 3.6599 3.9699 -0.7158 30 1 3.6766 3.8160 1.0574 31 1 5.9721 3.0433 0.8605 32 1 5.1977 5.5173 0.8890 33 1 6.6432 5.1620 -1.7761 34 1 4.9169 5.5534 -1.5834 35 1 5.4765 7.6524 -0.4488 36 1 6.3510 7.5854 -1.9991 37 1 9.8804 9.1833 1.8589 38 1 7.0160 7.0682 1.7346 39 1 8.7135 6.6864 1.3531 40 1 7.3261 4.6391 1.8335 41 1 8.0373 4.6329 0.2012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591736904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:01 Heat of formation + Delta-G solvation = -35.436135 kcal Electronic energy + Delta-G solvation = -19423.288872 eV Core-core repulsion = 16464.607996 eV Total energy + Delta-G solvation = -2958.680876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.57072 -37.36628 -34.74817 -32.35661 -31.23586 -30.01403 -29.36999 -29.01728 -25.84234 -24.10190 -22.40047 -21.59624 -21.19825 -19.05149 -17.15663 -16.72938 -16.44904 -15.69840 -15.27273 -14.87013 -14.56392 -14.42702 -13.91784 -13.90581 -13.82485 -13.47123 -13.14584 -12.77427 -12.63729 -12.31842 -12.12996 -12.00153 -11.37068 -11.27354 -11.04097 -10.74484 -10.70992 -10.31746 -10.26710 -10.24286 -10.06273 -9.91075 -9.56921 -9.42467 -8.45976 -8.16206 -7.95301 -6.65490 -5.77527 -3.19553 1.31590 2.27284 3.38667 3.46576 3.49223 4.01125 4.30595 4.51650 4.62821 4.74480 4.75750 4.80022 4.90607 5.12750 5.19333 5.32558 5.38023 5.44892 5.49397 5.57828 5.71016 5.84851 5.93324 6.15979 6.35179 6.48601 6.53371 6.63929 6.68019 6.83026 7.05170 7.32408 7.38414 7.54332 7.64747 7.68369 7.82028 8.47059 9.23200 9.86767 10.43643 11.31257 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.057018 B = 0.002933 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.958060 B = 9544.879946 C = 9573.386669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.239 6.239 3 C -0.123 4.123 4 C 0.129 3.871 5 H 0.103 0.897 6 O -0.536 6.536 7 C 0.033 3.967 8 N -0.677 5.677 9 C 0.096 3.904 10 C -0.116 4.116 11 C 0.145 3.855 12 N -0.592 5.592 13 C -0.249 4.249 14 H 0.066 0.934 15 C 0.000 4.000 16 N -0.905 5.905 17 Si 0.902 3.098 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.174 3.826 22 C -0.141 4.141 23 H 0.100 0.900 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.373 0.627 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.338 0.662 32 H 0.034 0.966 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.013 0.987 36 H 0.054 0.946 37 H 0.253 0.747 38 H 0.015 0.985 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.229 -14.077 -1.072 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.013 6.013 3 C -0.272 4.272 4 C 0.068 3.932 5 H 0.121 0.879 6 O -0.340 6.340 7 C -0.099 4.099 8 N -0.308 5.308 9 C -0.012 4.012 10 C -0.155 4.155 11 C 0.018 3.982 12 N -0.315 5.315 13 C -0.379 4.379 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.550 5.550 17 Si 0.732 3.268 18 H -0.202 1.202 19 H -0.218 1.218 20 H -0.215 1.215 21 C 0.047 3.953 22 C -0.181 4.181 23 H 0.119 0.881 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.220 0.780 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.156 0.844 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.095 -15.263 -1.236 21.502 hybrid contribution -0.733 1.970 0.435 2.147 sum -15.828 -13.293 -0.801 20.685 Atomic orbital electron populations 1.23421 0.95198 1.06461 1.04760 1.87197 1.05927 1.10204 1.97981 1.24268 1.01808 0.95573 1.05580 1.21584 0.88263 0.94001 0.89391 0.87934 1.86652 1.69993 1.62612 1.14769 1.22634 0.90876 0.95360 1.00985 1.60478 1.06647 1.10282 1.53433 1.21494 0.96721 0.86062 0.96969 1.21994 0.99751 0.97928 0.95866 1.20925 0.88675 0.92429 0.96217 1.44054 1.09480 1.57886 1.20038 1.19245 1.02384 1.25002 0.91257 0.91641 1.25054 1.00214 0.98392 0.96151 1.70043 1.34260 1.46101 1.04548 0.86223 0.84171 0.77889 0.78515 1.20217 1.21785 1.21550 1.20732 1.01840 0.85858 0.86836 1.22400 0.95365 1.01726 0.98559 0.88105 0.90587 0.90683 0.89701 0.89303 0.78033 0.90659 0.94736 0.84418 0.94849 0.91646 0.93824 0.96924 0.92729 0.93733 0.96681 0.89307 0.93648 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 10.76 101.05 1.09 0.27 16 2 S -0.24 -2.28 22.16 -107.50 -2.38 -4.66 16 3 C -0.12 -1.01 5.60 37.16 0.21 -0.80 16 4 C 0.13 1.29 3.17 -26.73 -0.08 1.21 16 5 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 6 O -0.54 -6.25 12.96 -35.23 -0.46 -6.71 16 7 C 0.03 0.37 5.15 -3.83 -0.02 0.35 16 8 N -0.68 -9.51 6.18 -106.69 -0.66 -10.17 16 9 C 0.10 1.62 2.46 -67.67 -0.17 1.46 16 10 C -0.12 -2.06 5.59 -26.61 -0.15 -2.21 16 11 C 0.14 3.07 6.52 -3.71 -0.02 3.05 16 12 N -0.59 -15.00 2.99 -172.32 -0.52 -15.51 16 13 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 14 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 15 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 16 N -0.90 -26.42 11.19 55.49 0.62 -25.80 16 17 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 C 0.17 4.17 5.30 -3.71 -0.02 4.15 16 22 C -0.14 -2.70 5.36 -26.61 -0.14 -2.84 16 23 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.37 3.32 9.05 45.56 0.41 3.73 16 29 H 0.08 0.82 7.41 -51.93 -0.38 0.44 16 30 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 31 H 0.34 4.57 8.33 -39.29 -0.33 4.25 16 32 H 0.03 0.58 7.80 -51.93 -0.40 0.18 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.04 0.68 7.42 -51.93 -0.39 0.29 16 35 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 36 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 2.39 6.07 -51.93 -0.31 2.07 16 40 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -30.73 338.56 -9.29 -40.02 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.43 Total: 3.43 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 0.46 Total: -2.53 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.55 Total: -51.49 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.46 Total: -6.71 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.38 Total: -4.66 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.73 -9.29 -40.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591736904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.582 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds