Wall clock time and date at job start Mon Mar 30 2020 01:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 102.99851 * 2 1 4 4 C 1.53006 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47032 * 305.00235 * 4 3 2 6 6 O 1.42903 * 109.46769 * 64.99902 * 4 3 2 7 7 C 1.52997 * 109.47556 * 184.99785 * 4 3 2 8 8 N 1.46896 * 109.47223 * 179.97438 * 7 4 3 9 9 C 1.46903 * 110.99574 * 179.97438 * 8 7 4 10 10 C 1.53034 * 109.46219 * 275.06706 * 9 8 7 11 11 C 1.53193 * 109.31662 * 178.61864 * 10 9 8 12 12 N 1.46924 * 108.77389 * 54.63075 * 11 10 9 13 13 C 1.36938 * 120.62597 * 126.41557 * 12 11 10 14 14 H 1.08006 * 120.00476 * 331.83481 * 13 12 11 15 15 C 1.38816 * 120.00080 * 151.82752 * 13 12 11 16 16 N 1.31621 * 119.99717 * 343.07800 * 15 13 12 17 17 Si 1.86802 * 120.00153 * 163.06751 * 15 13 12 18 18 H 1.48503 * 109.46967 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46754 * 120.00406 * 17 15 13 20 20 H 1.48498 * 109.47130 * 240.00464 * 17 15 13 21 21 C 1.46922 * 118.74480 * 306.40051 * 12 11 10 22 22 C 1.53040 * 109.45656 * 155.00246 * 9 8 7 23 23 H 1.08999 * 109.46935 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46999 * 59.99949 * 1 2 3 25 25 H 1.09003 * 109.46708 * 299.99971 * 1 2 3 26 26 H 1.08994 * 109.47076 * 299.99643 * 3 2 1 27 27 H 1.08992 * 109.47379 * 60.00092 * 3 2 1 28 28 H 0.96698 * 114.00143 * 59.99975 * 6 4 3 29 29 H 1.09003 * 109.46857 * 300.00502 * 7 4 3 30 30 H 1.09001 * 109.46711 * 59.99569 * 7 4 3 31 31 H 1.00895 * 110.99984 * 303.95521 * 8 7 4 32 32 H 1.08998 * 109.46417 * 35.03407 * 9 8 7 33 33 H 1.09003 * 109.50010 * 298.56921 * 10 9 8 34 34 H 1.09000 * 109.49704 * 58.66602 * 10 9 8 35 35 H 1.09009 * 109.58218 * 294.85038 * 11 10 9 36 36 H 1.08992 * 109.70950 * 174.49703 * 11 10 9 37 37 H 0.97005 * 119.99515 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.58094 * 293.81603 * 21 12 11 39 39 H 1.08996 * 109.70607 * 173.46260 * 21 12 11 40 40 H 1.08998 * 109.50214 * 301.33935 * 22 9 8 41 41 H 1.09003 * 109.49721 * 61.43330 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1694 1.3953 0.8427 6 8 4.2803 1.4278 -1.2202 7 6 4.0871 3.4253 0.1263 8 7 5.5467 3.5908 0.1275 9 6 5.9157 5.0077 0.2464 10 6 5.9076 5.6548 -1.1403 11 6 6.2591 7.1401 -1.0085 12 7 7.5366 7.2620 -0.2931 13 6 8.5715 7.9795 -0.8309 14 1 8.6631 8.0748 -1.9029 15 6 9.5030 8.5847 0.0017 16 7 9.2293 8.7608 1.2770 17 14 11.1449 9.1487 -0.6878 18 1 11.2055 8.8380 -2.1388 19 1 11.2883 10.6133 -0.4892 20 1 12.2460 8.4435 0.0162 21 6 7.6825 6.5999 1.0103 22 6 7.3150 5.1207 0.8558 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 1.8031 2.2370 -0.8900 27 1 1.8031 2.2371 0.8899 28 1 3.9436 1.8669 -2.0132 29 1 3.6599 3.9699 -0.7158 30 1 3.6766 3.8160 1.0574 31 1 5.9721 3.0433 0.8605 32 1 5.1977 5.5173 0.8890 33 1 6.6432 5.1620 -1.7761 34 1 4.9169 5.5534 -1.5834 35 1 5.4765 7.6524 -0.4488 36 1 6.3510 7.5854 -1.9991 37 1 9.8804 9.1833 1.8589 38 1 7.0160 7.0682 1.7346 39 1 8.7135 6.6864 1.3531 40 1 7.3261 4.6391 1.8335 41 1 8.0373 4.6329 0.2012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591736904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:59 Heat of formation + Delta-G solvation = -57.656311 kcal Electronic energy + Delta-G solvation = -19424.252411 eV Core-core repulsion = 16464.607996 eV Total energy + Delta-G solvation = -2959.644415 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.82413 -38.57785 -36.23190 -33.99005 -32.44082 -31.58316 -30.73392 -29.71575 -27.26078 -25.64791 -23.90708 -22.93760 -22.49030 -20.69040 -18.74199 -17.91758 -17.29852 -16.89066 -16.48075 -16.27522 -15.68933 -15.50493 -15.36670 -15.30924 -14.83419 -14.53910 -14.47525 -14.05839 -13.79074 -13.54689 -13.20386 -13.04402 -13.00187 -12.87284 -12.59566 -12.38364 -12.07209 -12.03031 -11.97553 -11.77723 -11.37383 -11.15911 -10.88940 -10.81564 -10.54850 -9.29716 -8.69246 -8.65613 -7.88529 -5.33647 0.70364 1.45568 1.47675 1.58368 1.69376 2.50978 3.03220 3.27891 3.58577 3.68845 3.78638 4.00551 4.03225 4.06759 4.17655 4.33283 4.35732 4.36641 4.46494 4.55308 4.58441 4.70296 4.70895 4.88083 4.88913 4.94786 5.02437 5.08273 5.10508 5.25992 5.41790 5.53327 5.64675 5.73357 6.14205 6.39041 6.47825 6.92148 7.14433 7.85816 8.37316 9.18186 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.057018 B = 0.002933 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.958060 B = 9544.879946 C = 9573.386669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.301 6.301 3 C -0.107 4.107 4 C 0.137 3.863 5 H 0.092 0.908 6 O -0.556 6.556 7 C 0.037 3.963 8 N -0.679 5.679 9 C 0.108 3.892 10 C -0.102 4.102 11 C 0.140 3.860 12 N -0.611 5.611 13 C -0.261 4.261 14 H 0.065 0.935 15 C -0.052 4.052 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.267 1.267 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.180 3.820 22 C -0.128 4.128 23 H 0.108 0.892 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.383 0.617 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.342 0.658 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.013 0.987 36 H 0.053 0.947 37 H 0.250 0.750 38 H -0.004 1.004 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.778 -14.933 -1.793 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.076 6.076 3 C -0.256 4.256 4 C 0.076 3.924 5 H 0.110 0.890 6 O -0.362 6.362 7 C -0.095 4.095 8 N -0.311 5.311 9 C -0.002 4.002 10 C -0.142 4.142 11 C 0.014 3.986 12 N -0.335 5.335 13 C -0.392 4.392 14 H 0.083 0.917 15 C -0.247 4.247 16 N -0.582 5.582 17 Si 0.795 3.205 18 H -0.191 1.191 19 H -0.218 1.218 20 H -0.216 1.216 21 C 0.053 3.947 22 C -0.167 4.167 23 H 0.126 0.874 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.232 0.768 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.160 0.840 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.014 0.986 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.676 -16.139 -1.980 23.291 hybrid contribution -0.336 2.221 0.651 2.339 sum -17.012 -13.918 -1.329 22.020 Atomic orbital electron populations 1.23443 0.91811 1.07335 1.05768 1.87412 1.09791 1.12225 1.98156 1.24133 1.00316 0.94255 1.06862 1.21464 0.89454 0.92896 0.88628 0.88975 1.86625 1.70637 1.63275 1.15712 1.22678 0.88778 0.96223 1.01782 1.60382 1.08846 1.08128 1.53719 1.21228 0.95007 0.87929 0.95993 1.21803 1.00872 0.95038 0.96438 1.21082 0.86919 0.94982 0.95575 1.44334 1.10617 1.58049 1.20510 1.19550 1.03380 1.24790 0.91435 0.91720 1.25808 1.03353 0.99076 0.96504 1.70188 1.35132 1.47230 1.05684 0.85215 0.79962 0.77083 0.78252 1.19145 1.21799 1.21624 1.20533 0.99331 0.88731 0.86061 1.22162 0.96763 0.97978 0.99798 0.87351 0.89560 0.89634 0.88295 0.88056 0.76796 0.89914 0.93725 0.83960 0.94842 0.93036 0.90742 0.96922 0.92795 0.94097 0.98602 0.92833 0.91533 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 10.76 113.37 1.22 0.05 16 2 S -0.30 -5.28 22.16 -56.49 -1.25 -6.53 16 3 C -0.11 -1.47 5.60 71.98 0.40 -1.07 16 4 C 0.14 2.42 3.17 30.60 0.10 2.52 16 5 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 6 O -0.56 -11.92 12.96 -148.98 -1.93 -13.85 16 7 C 0.04 0.70 5.15 86.30 0.44 1.14 16 8 N -0.68 -17.44 6.18 -491.45 -3.03 -20.48 16 9 C 0.11 3.43 2.46 44.94 0.11 3.54 16 10 C -0.10 -3.44 5.59 30.67 0.17 -3.27 16 11 C 0.14 5.86 6.52 86.36 0.56 6.42 16 12 N -0.61 -31.31 2.99 -699.10 -2.09 -33.41 16 13 C -0.26 -14.67 9.58 84.03 0.81 -13.87 16 14 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 15 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 16 N -0.94 -56.04 11.19 21.65 0.24 -55.80 16 17 Si 0.97 45.52 29.59 68.60 2.03 47.55 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 21 C 0.18 8.79 5.30 86.36 0.46 9.25 16 22 C -0.13 -4.81 5.36 30.67 0.16 -4.65 16 23 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.38 5.99 9.05 -74.06 -0.67 5.32 16 29 H 0.08 1.49 7.41 -2.39 -0.02 1.47 16 30 H 0.04 0.80 8.06 -2.39 -0.02 0.78 16 31 H 0.34 8.51 8.33 -89.70 -0.75 7.76 16 32 H 0.03 1.09 7.80 -2.39 -0.02 1.07 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 2.07 7.42 -2.39 -0.02 2.05 16 35 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.05 2.21 7.93 -2.39 -0.02 2.20 16 37 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.05 2.98 6.07 -2.39 -0.01 2.96 16 40 H 0.07 2.21 8.10 -2.39 -0.02 2.19 16 41 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -66.86 338.56 -1.59 -68.45 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.41 Total: 16.53 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 4.85 Total: -2.48 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -4.88 Total: -109.68 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -1.93 Total: -13.85 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -1.25 Total: -6.53 kcal Total: -66.86 -1.59 -68.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591736904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.794 kcal (2) G-P(sol) polarization free energy of solvation -66.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds