Wall clock time and date at job start Mon Mar 30 2020 01:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32164 * 119.99843 * 2 1 4 4 C 1.32120 * 119.99467 * 180.27470 * 3 2 1 5 5 C 1.38393 * 120.00189 * 359.73843 * 4 3 2 6 6 N 1.32123 * 119.99687 * 359.97438 * 5 4 3 7 7 C 1.32156 * 119.99992 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99829 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46798 * 90.00270 * 8 7 6 10 10 N 1.46900 * 109.47074 * 180.02562 * 9 8 7 11 11 C 1.46904 * 110.99779 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46858 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47753 * 305.00128 * 12 11 10 14 14 C 1.47204 * 109.47042 * 64.99895 * 12 11 10 15 15 N 8.04626 * 85.98733 * 167.52571 * 2 1 3 16 16 C 1.52996 * 109.47153 * 184.99851 * 12 11 10 17 17 C 1.50702 * 109.47159 * 175.00123 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 H 1.09005 * 109.46939 * 270.24330 * 1 2 3 26 26 H 1.09003 * 109.47108 * 30.24630 * 1 2 3 27 27 H 1.08997 * 109.47097 * 150.24540 * 1 2 3 28 28 H 1.08005 * 119.99729 * 179.70906 * 4 3 2 29 29 H 1.07997 * 120.00045 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47072 * 330.00811 * 8 7 6 31 31 H 1.08998 * 109.47245 * 209.99964 * 8 7 6 32 32 H 1.09003 * 109.47140 * 60.00064 * 9 8 7 33 33 H 1.09004 * 109.47248 * 300.00216 * 9 8 7 34 34 H 1.00899 * 110.99585 * 303.95295 * 10 9 8 35 35 H 1.08997 * 109.46933 * 59.99775 * 11 10 9 36 36 H 1.08996 * 109.47325 * 299.99917 * 11 10 9 37 37 H 1.09004 * 109.47066 * 55.00326 * 16 12 11 38 38 H 1.08994 * 109.47405 * 295.00156 * 16 12 11 39 39 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1446 0.0000 4 6 3.4890 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0058 6 7 3.5202 -1.1982 0.0000 7 6 2.1987 -1.1981 0.0055 8 6 1.4451 -2.5031 0.0114 9 6 1.1961 -2.9416 1.4560 10 7 0.4621 -4.2140 1.4619 11 6 0.2040 -4.6665 2.8354 12 6 -0.5609 -5.9911 2.8007 13 1 -1.4659 -5.8727 2.2049 14 6 0.2887 -7.0327 2.2007 15 7 0.9440 -7.8371 1.7337 16 6 -0.9385 -6.3995 4.2260 17 6 -1.7962 -7.6378 4.1832 18 1 -2.0467 -8.0888 3.2343 19 6 -2.2562 -8.1988 5.3558 20 7 -1.9509 -7.6499 6.5113 21 14 -3.3130 -9.7381 5.3031 22 1 -3.5106 -10.1549 3.8916 23 1 -2.6367 -10.8287 6.0507 24 1 -4.6313 -9.4551 5.9253 25 1 -0.3633 0.0044 1.0277 26 1 -0.3633 0.8878 -0.5177 27 1 -0.3633 -0.8922 -0.5100 28 1 4.0290 2.0799 -0.0102 29 1 5.2609 -0.0541 -0.0107 30 1 2.0321 -3.2639 -0.5031 31 1 0.4906 -2.3739 -0.4987 32 1 0.6091 -2.1807 1.9706 33 1 2.1506 -3.0708 1.9662 34 1 -0.3975 -4.1380 0.9390 35 1 -0.3903 -3.9177 3.3590 36 1 1.1514 -4.8072 3.3557 37 1 -1.4926 -5.5899 4.7012 38 1 -0.0331 -6.6042 4.7973 39 1 -2.2748 -8.0443 7.3362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591767865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:41 Heat of formation + Delta-G solvation = 54.226102 kcal Electronic energy + Delta-G solvation = -19605.920936 eV Core-core repulsion = 16547.976907 eV Total energy + Delta-G solvation = -3057.944030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.49082 -37.56617 -35.86926 -34.80475 -34.21710 -33.34145 -31.68236 -29.55879 -28.25537 -26.45584 -24.33426 -23.21166 -22.51558 -22.01783 -21.50824 -18.16326 -17.14403 -16.76856 -16.41606 -15.89923 -15.52099 -15.18456 -14.78031 -14.33729 -14.28508 -13.66038 -13.41255 -13.25704 -12.99779 -12.66863 -12.49703 -12.39315 -12.07451 -11.94057 -11.82819 -11.67564 -11.34717 -11.15142 -11.10471 -10.99565 -10.69878 -10.51929 -10.25123 -9.58531 -9.33730 -9.32541 -9.19813 -8.47670 -8.36814 -6.10753 -4.13810 0.45487 0.84640 3.27849 3.33820 3.36308 3.40874 3.66480 3.74654 3.82410 3.83825 4.13555 4.21843 4.40374 4.54975 4.74395 4.86156 4.90044 4.98026 5.04387 5.12995 5.21134 5.27596 5.32683 5.46113 5.53716 5.60320 5.70957 5.86035 5.91299 5.99812 6.14051 6.36663 6.47729 7.01302 7.01513 7.40238 7.43868 7.51360 7.52250 7.84804 8.21981 8.59394 8.91340 9.51831 11.00203 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.035349 B = 0.002800 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.914152 B = 9998.184955 C =10265.709776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.082 3.918 3 N -0.440 5.440 4 C 0.045 3.955 5 C 0.044 3.956 6 N -0.431 5.431 7 C 0.089 3.911 8 C -0.071 4.071 9 C 0.070 3.930 10 N -0.692 5.692 11 C 0.067 3.933 12 C 0.010 3.990 13 H 0.100 0.900 14 C 0.254 3.746 15 N -0.478 5.478 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.168 0.832 29 H 0.169 0.831 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.341 0.659 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.098 19.557 -12.044 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.058 4.058 3 N -0.155 5.155 4 C -0.115 4.115 5 C -0.115 4.115 6 N -0.145 5.145 7 C -0.052 4.052 8 C -0.110 4.110 9 C -0.060 4.060 10 N -0.323 5.323 11 C -0.063 4.063 12 C -0.012 4.012 13 H 0.118 0.882 14 C -0.063 4.063 15 N -0.155 5.155 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.186 0.814 29 H 0.186 0.814 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.641 17.940 -12.629 23.231 hybrid contribution -1.276 0.176 0.621 1.430 sum 6.365 18.116 -12.008 22.647 Atomic orbital electron populations 1.20816 0.87670 1.04087 1.03835 1.22155 0.98514 0.88993 0.96151 1.68297 1.09008 1.29217 1.09008 1.23747 0.90811 0.99892 0.97061 1.23780 1.01959 0.88759 0.97032 1.68324 1.08281 1.29825 1.08090 1.22069 0.90589 0.96417 0.96114 1.20581 0.99701 0.92031 0.98649 1.21792 0.99365 0.90182 0.94662 1.60475 1.27140 1.29305 1.15354 1.22074 1.00507 0.95228 0.88487 1.19209 0.94056 0.87142 1.00767 0.88233 1.28919 0.92715 0.93149 0.91496 1.81058 1.11327 1.11576 1.11557 1.19176 0.97478 0.97441 0.86692 1.21186 1.31618 1.10721 0.92839 0.92408 1.24963 0.96279 0.97328 0.95472 1.69950 1.45397 1.40259 0.97435 0.86533 0.80109 0.83154 0.78270 1.19657 1.20968 1.20862 0.89663 0.90183 0.89678 0.81437 0.81387 0.88631 0.89401 0.95006 0.90658 0.84064 0.93161 0.90458 0.94447 0.95543 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.79 36.01 0.35 -0.39 16 2 C 0.08 0.80 6.79 -82.41 -0.56 0.24 16 3 N -0.44 -4.50 10.42 -9.28 -0.10 -4.60 16 4 C 0.04 0.36 11.23 -17.37 -0.19 0.17 16 5 C 0.04 0.38 11.23 -17.37 -0.19 0.18 16 6 N -0.43 -4.83 10.42 -9.29 -0.10 -4.92 16 7 C 0.09 0.93 6.04 -82.41 -0.50 0.43 16 8 C -0.07 -0.67 5.38 -27.88 -0.15 -0.82 16 9 C 0.07 0.74 5.67 -3.82 -0.02 0.72 16 10 N -0.69 -8.40 6.20 -113.78 -0.71 -9.11 16 11 C 0.07 0.95 5.05 -3.82 -0.02 0.93 16 12 C 0.01 0.18 2.35 -93.41 -0.22 -0.04 16 13 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 14 C 0.25 5.28 13.67 -20.70 -0.28 4.99 16 15 N -0.48 -10.90 18.55 42.22 0.78 -10.12 16 16 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 17 C -0.53 -13.87 8.60 -34.44 -0.30 -14.17 16 18 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 21 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.46 5.95 -51.93 -0.31 0.16 16 28 H 0.17 0.78 8.06 -52.48 -0.42 0.35 16 29 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 0.63 5.94 -51.93 -0.31 0.32 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.34 3.49 8.73 -39.29 -0.34 3.15 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 339.46 15.07 5.12 5.12 Total: -1.00 -32.78 339.46 -7.16 -39.93 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.57 Total: -2.22 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -2.31 Total: -5.57 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.62 Total: -53.44 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.78 -7.16 -39.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591767865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.158 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds