Wall clock time and date at job start Mon Mar 30 2020 01:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32164 * 119.99843 * 2 1 4 4 C 1.32120 * 119.99467 * 180.27470 * 3 2 1 5 5 C 1.38393 * 120.00189 * 359.73843 * 4 3 2 6 6 N 1.32123 * 119.99687 * 359.97438 * 5 4 3 7 7 C 1.32156 * 119.99992 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99829 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46798 * 90.00270 * 8 7 6 10 10 N 1.46900 * 109.47074 * 180.02562 * 9 8 7 11 11 C 1.46904 * 110.99779 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46858 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47753 * 305.00128 * 12 11 10 14 14 C 1.47204 * 109.47042 * 64.99895 * 12 11 10 15 15 N 8.04626 * 85.98733 * 167.52571 * 2 1 3 16 16 C 1.52996 * 109.47153 * 184.99851 * 12 11 10 17 17 C 1.50702 * 109.47159 * 175.00123 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 H 1.09005 * 109.46939 * 270.24330 * 1 2 3 26 26 H 1.09003 * 109.47108 * 30.24630 * 1 2 3 27 27 H 1.08997 * 109.47097 * 150.24540 * 1 2 3 28 28 H 1.08005 * 119.99729 * 179.70906 * 4 3 2 29 29 H 1.07997 * 120.00045 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47072 * 330.00811 * 8 7 6 31 31 H 1.08998 * 109.47245 * 209.99964 * 8 7 6 32 32 H 1.09003 * 109.47140 * 60.00064 * 9 8 7 33 33 H 1.09004 * 109.47248 * 300.00216 * 9 8 7 34 34 H 1.00899 * 110.99585 * 303.95295 * 10 9 8 35 35 H 1.08997 * 109.46933 * 59.99775 * 11 10 9 36 36 H 1.08996 * 109.47325 * 299.99917 * 11 10 9 37 37 H 1.09004 * 109.47066 * 55.00326 * 16 12 11 38 38 H 1.08994 * 109.47405 * 295.00156 * 16 12 11 39 39 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1446 0.0000 4 6 3.4890 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0058 6 7 3.5202 -1.1982 0.0000 7 6 2.1987 -1.1981 0.0055 8 6 1.4451 -2.5031 0.0114 9 6 1.1961 -2.9416 1.4560 10 7 0.4621 -4.2140 1.4619 11 6 0.2040 -4.6665 2.8354 12 6 -0.5609 -5.9911 2.8007 13 1 -1.4659 -5.8727 2.2049 14 6 0.2887 -7.0327 2.2007 15 7 0.9440 -7.8371 1.7337 16 6 -0.9385 -6.3995 4.2260 17 6 -1.7962 -7.6378 4.1832 18 1 -2.0467 -8.0888 3.2343 19 6 -2.2562 -8.1988 5.3558 20 7 -1.9509 -7.6499 6.5113 21 14 -3.3130 -9.7381 5.3031 22 1 -3.5106 -10.1549 3.8916 23 1 -2.6367 -10.8287 6.0507 24 1 -4.6313 -9.4551 5.9253 25 1 -0.3633 0.0044 1.0277 26 1 -0.3633 0.8878 -0.5177 27 1 -0.3633 -0.8922 -0.5100 28 1 4.0290 2.0799 -0.0102 29 1 5.2609 -0.0541 -0.0107 30 1 2.0321 -3.2639 -0.5031 31 1 0.4906 -2.3739 -0.4987 32 1 0.6091 -2.1807 1.9706 33 1 2.1506 -3.0708 1.9662 34 1 -0.3975 -4.1380 0.9390 35 1 -0.3903 -3.9177 3.3590 36 1 1.1514 -4.8072 3.3557 37 1 -1.4926 -5.5899 4.7012 38 1 -0.0331 -6.6042 4.7973 39 1 -2.2748 -8.0443 7.3362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591767865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:40 Heat of formation + Delta-G solvation = 31.769521 kcal Electronic energy + Delta-G solvation = -19606.894727 eV Core-core repulsion = 16547.976907 eV Total energy + Delta-G solvation = -3058.917820 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.15333 -38.85739 -37.10366 -35.67383 -35.44405 -34.80952 -33.17838 -30.55458 -28.94761 -27.98032 -25.40137 -24.02059 -23.66450 -23.47501 -22.50060 -18.86078 -18.63369 -18.33164 -17.38751 -16.73785 -16.45972 -16.40310 -16.05279 -15.51438 -15.40738 -14.70262 -14.59151 -14.25386 -13.93597 -13.83573 -13.71940 -13.50399 -13.43370 -13.09063 -12.97571 -12.96760 -12.68909 -12.54484 -12.48091 -12.32755 -11.97148 -11.90399 -11.78223 -11.37827 -11.11613 -10.54766 -10.00351 -9.96584 -9.32717 -8.18686 -6.26540 -0.18994 0.15921 1.39894 1.43400 1.53558 2.08958 2.15533 2.42449 2.66994 2.98176 3.17060 3.22574 3.33872 3.43265 3.53361 3.87620 4.04752 4.17538 4.24356 4.32805 4.40761 4.44964 4.46749 4.62596 4.76345 4.78594 4.81585 4.86053 5.01936 5.05438 5.10266 5.21504 5.48925 5.52978 5.63951 5.80687 5.99117 6.22404 6.36462 6.58651 6.85356 6.85505 6.96168 7.42187 8.92474 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.035349 B = 0.002800 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.914152 B = 9998.184955 C =10265.709776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.074 3.926 3 N -0.464 5.464 4 C 0.047 3.953 5 C 0.038 3.962 6 N -0.464 5.464 7 C 0.072 3.928 8 C -0.062 4.062 9 C 0.078 3.922 10 N -0.699 5.699 11 C 0.079 3.921 12 C 0.021 3.979 13 H 0.126 0.874 14 C 0.265 3.735 15 N -0.517 5.517 16 C 0.036 3.964 17 C -0.536 4.536 18 H 0.056 0.944 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.948 3.052 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.272 1.272 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.201 0.799 29 H 0.196 0.804 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.356 0.644 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.037 0.963 38 H -0.002 1.002 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.327 20.778 -12.971 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.066 4.066 3 N -0.180 5.180 4 C -0.112 4.112 5 C -0.122 4.122 6 N -0.179 5.179 7 C -0.068 4.068 8 C -0.100 4.100 9 C -0.052 4.052 10 N -0.332 5.332 11 C -0.051 4.051 12 C -0.001 4.001 13 H 0.144 0.856 14 C -0.051 4.051 15 N -0.195 5.195 16 C -0.003 4.003 17 C -0.574 4.574 18 H 0.074 0.926 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.775 3.225 22 H -0.193 1.193 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.119 0.881 28 H 0.218 0.782 29 H 0.213 0.787 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.176 0.824 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.850 19.164 -13.576 24.464 hybrid contribution -0.960 -0.140 0.898 1.322 sum 5.890 19.025 -12.678 23.609 Atomic orbital electron populations 1.20903 0.85977 1.04987 1.04442 1.22508 0.99730 0.88640 0.95679 1.68364 1.10091 1.29577 1.09923 1.24309 0.90418 1.01139 0.95376 1.24282 1.03306 0.88275 0.96304 1.68297 1.09075 1.31429 1.09085 1.22167 0.90607 0.96894 0.97158 1.20496 1.00543 0.91277 0.97731 1.21694 0.98275 0.89707 0.95526 1.60349 1.28173 1.30530 1.14120 1.21850 0.99601 0.93710 0.89963 1.19200 0.95185 0.87892 0.97789 0.85624 1.29492 0.92099 0.92827 0.90697 1.81058 1.12782 1.12765 1.12881 1.19004 0.95581 0.96295 0.89376 1.21602 1.31483 1.11760 0.92602 0.92621 1.25726 0.97683 1.00099 0.95407 1.70043 1.46739 1.41720 0.97969 0.85641 0.78920 0.79731 0.78257 1.19272 1.21346 1.19770 0.89047 0.89929 0.88141 0.78209 0.78689 0.90413 0.86944 0.93439 0.92840 0.82407 0.91080 0.91863 0.94429 0.98379 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.79 71.24 0.70 -0.56 16 2 C 0.07 1.34 6.79 42.53 0.29 1.63 16 3 N -0.46 -8.82 10.42 -183.28 -1.91 -10.73 16 4 C 0.05 0.68 11.23 84.69 0.95 1.64 16 5 C 0.04 0.60 11.23 84.69 0.95 1.55 16 6 N -0.46 -10.14 10.42 -183.29 -1.91 -12.05 16 7 C 0.07 1.43 6.04 42.53 0.26 1.69 16 8 C -0.06 -1.09 5.38 29.85 0.16 -0.93 16 9 C 0.08 1.53 5.67 86.30 0.49 2.02 16 10 N -0.70 -15.66 6.20 -513.88 -3.19 -18.85 16 11 C 0.08 2.12 5.05 86.30 0.44 2.56 16 12 C 0.02 0.72 2.35 -12.60 -0.03 0.69 16 13 H 0.13 3.71 8.14 -2.39 -0.02 3.69 16 14 C 0.26 10.83 13.67 89.42 1.22 12.05 16 15 N -0.52 -23.50 18.55 20.03 0.37 -23.12 16 16 C 0.04 1.64 4.42 29.85 0.13 1.77 16 17 C -0.54 -28.04 8.60 25.60 0.22 -27.82 16 18 H 0.06 2.88 7.59 -2.91 -0.02 2.86 16 19 C 0.01 0.52 5.46 84.66 0.46 0.98 16 20 N -0.92 -52.90 13.29 21.45 0.28 -52.62 16 21 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.10 0.83 5.95 -2.39 -0.01 0.81 16 28 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 29 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 1.35 5.94 -2.39 -0.01 1.33 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.05 1.29 8.14 -2.38 -0.02 1.28 16 34 H 0.36 6.24 8.73 -89.69 -0.78 5.46 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -70.66 339.46 2.19 -68.48 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.28 Total: 6.39 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 6.24 Total: -2.72 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -6.35 Total: -117.37 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -70.66 2.19 -68.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591767865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.246 kcal (2) G-P(sol) polarization free energy of solvation -70.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds