Wall clock time and date at job start Mon Mar 30 2020 01:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32161 * 120.00038 * 2 1 4 4 C 1.32123 * 119.99831 * 180.27719 * 3 2 1 5 5 C 1.38383 * 119.99874 * 359.73869 * 4 3 2 6 6 N 1.32128 * 120.00137 * 0.02562 * 5 4 3 7 7 C 1.32158 * 119.99529 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99609 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46912 * 89.99934 * 8 7 6 10 10 N 1.46901 * 109.46769 * 179.97438 * 9 8 7 11 11 C 1.46906 * 110.99793 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.46978 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47607 * 54.99702 * 12 11 10 14 14 C 1.47206 * 109.47245 * 294.99931 * 12 11 10 15 15 N 7.35275 * 53.02201 * 162.71223 * 2 1 3 16 16 C 1.53001 * 109.46969 * 175.00329 * 12 11 10 17 17 C 1.50703 * 109.47012 * 185.00016 * 16 12 11 18 18 H 1.07998 * 119.99974 * 359.97438 * 17 16 12 19 19 C 1.37877 * 120.00187 * 179.97438 * 17 16 12 20 20 N 1.31520 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00185 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46846 * 90.00127 * 21 19 17 23 23 H 1.48500 * 109.46993 * 209.99659 * 21 19 17 24 24 H 1.48501 * 109.47003 * 329.99834 * 21 19 17 25 25 H 1.08996 * 109.46938 * 270.23997 * 1 2 3 26 26 H 1.08998 * 109.47352 * 30.24064 * 1 2 3 27 27 H 1.09000 * 109.47325 * 150.23931 * 1 2 3 28 28 H 1.08004 * 119.99630 * 179.71529 * 4 3 2 29 29 H 1.08009 * 120.00101 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.46980 * 330.00062 * 8 7 6 31 31 H 1.08992 * 109.47158 * 210.00168 * 8 7 6 32 32 H 1.09002 * 109.47398 * 300.00078 * 9 8 7 33 33 H 1.09001 * 109.47194 * 60.00258 * 9 8 7 34 34 H 1.00898 * 110.99877 * 56.04956 * 10 9 8 35 35 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 36 36 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 37 37 H 1.09004 * 109.46816 * 304.99383 * 16 12 11 38 38 H 1.08993 * 109.47518 * 65.00018 * 16 12 11 39 39 H 0.96999 * 120.00038 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0059 6 7 3.5202 -1.1982 -0.0012 7 6 2.1987 -1.1981 0.0044 8 6 1.4451 -2.5032 0.0092 9 6 1.1962 -2.9430 1.4533 10 7 0.4611 -4.2148 1.4579 11 6 0.2031 -4.6687 2.8311 12 6 -0.5618 -5.9933 2.7951 13 1 -0.0090 -6.7160 2.1951 14 6 -1.8909 -5.7764 2.2004 15 7 -2.9157 -5.6085 1.7455 16 6 -0.7217 -6.5287 4.2194 17 6 -1.3656 -7.8905 4.1748 18 1 -1.6342 -8.3300 3.2255 19 6 -1.6116 -8.5755 5.3458 20 7 -1.2839 -8.0406 6.5018 21 14 -2.4103 -10.2632 5.2905 22 1 -1.3576 -11.3061 5.1932 23 1 -3.2046 -10.4757 6.5272 24 1 -3.3037 -10.3496 4.1074 25 1 -0.3633 0.0043 1.0276 26 1 -0.3634 0.8878 -0.5175 27 1 -0.3634 -0.8921 -0.5101 28 1 4.0290 2.0799 -0.0102 29 1 5.2610 -0.0540 -0.0108 30 1 2.0320 -3.2635 -0.5062 31 1 0.4906 -2.3734 -0.5008 32 1 2.1507 -3.0727 1.9633 33 1 0.6093 -2.1827 1.9686 34 1 0.9544 -4.9195 0.9305 35 1 1.1505 -4.8108 3.3508 36 1 -0.3905 -3.9200 3.3557 37 1 0.2581 -6.6053 4.6908 38 1 -1.3497 -5.8486 4.7949 39 1 -1.4567 -8.5226 7.3256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591767866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:58 Heat of formation + Delta-G solvation = 54.244414 kcal Electronic energy + Delta-G solvation = -19619.157187 eV Core-core repulsion = 16561.213951 eV Total energy + Delta-G solvation = -3057.943236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48191 -37.57117 -35.89970 -34.79300 -34.24531 -33.34464 -31.68348 -29.53441 -28.22736 -26.45526 -24.32214 -23.18895 -22.50579 -22.01588 -21.50779 -18.15980 -17.12530 -16.76647 -16.41136 -15.88690 -15.49947 -15.18576 -14.77231 -14.33872 -14.26229 -13.63585 -13.35580 -13.17110 -12.95285 -12.93847 -12.48791 -12.19421 -12.08460 -11.93151 -11.82879 -11.71064 -11.30816 -11.18367 -11.12451 -10.98362 -10.69376 -10.53625 -10.25519 -9.58379 -9.33334 -9.32491 -9.20570 -8.47196 -8.37356 -6.10454 -4.13681 0.46490 0.84798 3.28720 3.34374 3.35790 3.40490 3.67081 3.75658 3.84038 3.85302 4.13269 4.23216 4.40597 4.57302 4.76176 4.88719 4.92475 4.99991 5.04678 5.10752 5.27731 5.30883 5.42070 5.49667 5.54420 5.66334 5.71436 5.82440 5.89347 6.01091 6.17321 6.36295 6.48072 7.00558 7.02125 7.40385 7.43545 7.51469 7.52073 7.84806 8.22075 8.58192 8.91184 9.51922 11.00467 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.036775 B = 0.002808 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.195997 B = 9970.891276 C =10298.595749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.086 3.914 3 N -0.440 5.440 4 C 0.045 3.955 5 C 0.043 3.957 6 N -0.433 5.433 7 C 0.088 3.912 8 C -0.071 4.071 9 C 0.069 3.931 10 N -0.692 5.692 11 C 0.067 3.933 12 C 0.009 3.991 13 H 0.100 0.900 14 C 0.256 3.744 15 N -0.478 5.478 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.168 0.832 29 H 0.169 0.831 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.343 0.657 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.708 16.274 -12.054 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.054 4.054 3 N -0.156 5.156 4 C -0.115 4.115 5 C -0.117 4.117 6 N -0.148 5.148 7 C -0.053 4.053 8 C -0.109 4.109 9 C -0.061 4.061 10 N -0.323 5.323 11 C -0.063 4.063 12 C -0.013 4.013 13 H 0.117 0.883 14 C -0.061 4.061 15 N -0.155 5.155 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.185 0.815 29 H 0.186 0.814 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.161 0.839 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.542 16.802 -12.613 23.074 hybrid contribution 1.106 -1.202 0.604 1.741 sum 10.648 15.600 -12.009 22.382 Atomic orbital electron populations 1.20835 0.87473 1.04197 1.04016 1.22180 0.98600 0.88916 0.95727 1.68310 1.08976 1.29262 1.09007 1.23746 0.90835 0.99879 0.96997 1.23755 1.01898 0.88797 0.97253 1.68304 1.08279 1.29881 1.08305 1.22068 0.90498 0.96542 0.96237 1.20586 0.99816 0.91872 0.98647 1.21786 0.96685 0.92939 0.94682 1.60500 1.51355 1.05360 1.15131 1.22069 0.99262 0.96417 0.88550 1.19215 0.85073 0.96171 1.00840 0.88254 1.28752 0.94460 0.91408 0.91514 1.80887 1.12546 1.10456 1.11639 1.19170 0.98647 0.96216 0.86709 1.21145 1.40527 1.01906 0.92866 0.92467 1.24960 0.95478 0.98110 0.95459 1.69940 1.47467 1.38164 0.97491 0.86587 0.79544 0.84286 0.77650 1.20476 1.21148 1.19830 0.89565 0.90255 0.89406 0.81459 0.81420 0.89590 0.88446 0.94687 0.90939 0.83905 0.93178 0.90466 0.94462 0.95550 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.79 36.01 0.35 -0.53 16 2 C 0.09 0.88 6.79 -82.41 -0.56 0.32 16 3 N -0.44 -4.64 10.42 -9.29 -0.10 -4.73 16 4 C 0.05 0.37 11.23 -17.37 -0.20 0.17 16 5 C 0.04 0.35 11.23 -17.37 -0.19 0.16 16 6 N -0.43 -4.66 10.42 -9.28 -0.10 -4.76 16 7 C 0.09 0.91 6.04 -82.41 -0.50 0.41 16 8 C -0.07 -0.66 5.38 -27.88 -0.15 -0.81 16 9 C 0.07 0.73 5.67 -3.82 -0.02 0.71 16 10 N -0.69 -8.39 6.20 -113.78 -0.71 -9.10 16 11 C 0.07 0.95 5.05 -3.82 -0.02 0.93 16 12 C 0.01 0.16 2.35 -93.41 -0.22 -0.06 16 13 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 14 C 0.26 5.23 13.66 -20.83 -0.28 4.94 16 15 N -0.48 -10.68 18.52 42.07 0.78 -9.90 16 16 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 17 C -0.53 -13.91 8.60 -34.44 -0.30 -14.21 16 18 H 0.06 1.50 7.59 -52.49 -0.40 1.11 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.65 5.95 -51.93 -0.31 0.34 16 28 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 29 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.85 5.94 -51.93 -0.31 0.54 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.34 3.72 8.73 -39.29 -0.34 3.38 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 339.42 15.07 5.12 5.12 Total: -1.00 -32.20 339.42 -7.16 -39.37 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.57 Total: -1.70 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -2.31 Total: -5.77 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.62 Total: -53.23 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.20 -7.16 -39.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591767866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.612 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds