Wall clock time and date at job start Mon Mar 30 2020 01:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32161 * 120.00038 * 2 1 4 4 C 1.32123 * 119.99831 * 180.27719 * 3 2 1 5 5 C 1.38383 * 119.99874 * 359.73869 * 4 3 2 6 6 N 1.32128 * 120.00137 * 0.02562 * 5 4 3 7 7 C 1.32158 * 119.99529 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99609 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46912 * 89.99934 * 8 7 6 10 10 N 1.46901 * 109.46769 * 179.97438 * 9 8 7 11 11 C 1.46906 * 110.99793 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.46978 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47607 * 54.99702 * 12 11 10 14 14 C 1.47206 * 109.47245 * 294.99931 * 12 11 10 15 15 N 7.35275 * 53.02201 * 162.71223 * 2 1 3 16 16 C 1.53001 * 109.46969 * 175.00329 * 12 11 10 17 17 C 1.50703 * 109.47012 * 185.00016 * 16 12 11 18 18 H 1.07998 * 119.99974 * 359.97438 * 17 16 12 19 19 C 1.37877 * 120.00187 * 179.97438 * 17 16 12 20 20 N 1.31520 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00185 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46846 * 90.00127 * 21 19 17 23 23 H 1.48500 * 109.46993 * 209.99659 * 21 19 17 24 24 H 1.48501 * 109.47003 * 329.99834 * 21 19 17 25 25 H 1.08996 * 109.46938 * 270.23997 * 1 2 3 26 26 H 1.08998 * 109.47352 * 30.24064 * 1 2 3 27 27 H 1.09000 * 109.47325 * 150.23931 * 1 2 3 28 28 H 1.08004 * 119.99630 * 179.71529 * 4 3 2 29 29 H 1.08009 * 120.00101 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.46980 * 330.00062 * 8 7 6 31 31 H 1.08992 * 109.47158 * 210.00168 * 8 7 6 32 32 H 1.09002 * 109.47398 * 300.00078 * 9 8 7 33 33 H 1.09001 * 109.47194 * 60.00258 * 9 8 7 34 34 H 1.00898 * 110.99877 * 56.04956 * 10 9 8 35 35 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 36 36 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 37 37 H 1.09004 * 109.46816 * 304.99383 * 16 12 11 38 38 H 1.08993 * 109.47518 * 65.00018 * 16 12 11 39 39 H 0.96999 * 120.00038 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0059 6 7 3.5202 -1.1982 -0.0012 7 6 2.1987 -1.1981 0.0044 8 6 1.4451 -2.5032 0.0092 9 6 1.1962 -2.9430 1.4533 10 7 0.4611 -4.2148 1.4579 11 6 0.2031 -4.6687 2.8311 12 6 -0.5618 -5.9933 2.7951 13 1 -0.0090 -6.7160 2.1951 14 6 -1.8909 -5.7764 2.2004 15 7 -2.9157 -5.6085 1.7455 16 6 -0.7217 -6.5287 4.2194 17 6 -1.3656 -7.8905 4.1748 18 1 -1.6342 -8.3300 3.2255 19 6 -1.6116 -8.5755 5.3458 20 7 -1.2839 -8.0406 6.5018 21 14 -2.4103 -10.2632 5.2905 22 1 -1.3576 -11.3061 5.1932 23 1 -3.2046 -10.4757 6.5272 24 1 -3.3037 -10.3496 4.1074 25 1 -0.3633 0.0043 1.0276 26 1 -0.3634 0.8878 -0.5175 27 1 -0.3634 -0.8921 -0.5101 28 1 4.0290 2.0799 -0.0102 29 1 5.2610 -0.0540 -0.0108 30 1 2.0320 -3.2635 -0.5062 31 1 0.4906 -2.3734 -0.5008 32 1 2.1507 -3.0727 1.9633 33 1 0.6093 -2.1827 1.9686 34 1 0.9544 -4.9195 0.9305 35 1 1.1505 -4.8108 3.3508 36 1 -0.3905 -3.9200 3.3557 37 1 0.2581 -6.6053 4.6908 38 1 -1.3497 -5.8486 4.7949 39 1 -1.4567 -8.5226 7.3256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591767866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:51 Heat of formation + Delta-G solvation = 32.558710 kcal Electronic energy + Delta-G solvation = -19620.097550 eV Core-core repulsion = 16561.213951 eV Total energy + Delta-G solvation = -3058.883598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.15652 -38.87427 -37.12731 -35.69680 -35.44562 -34.81880 -33.18919 -30.55949 -28.96204 -27.98550 -25.39950 -24.01547 -23.67497 -23.46925 -22.50223 -18.87497 -18.62013 -18.32561 -17.38876 -16.74383 -16.46002 -16.38405 -16.08585 -15.51746 -15.40591 -14.77504 -14.44440 -14.27449 -14.02077 -13.82933 -13.74447 -13.67196 -13.30013 -13.19519 -13.02193 -12.80214 -12.72020 -12.55031 -12.46662 -12.33611 -11.97691 -11.89966 -11.82391 -11.38431 -11.13318 -10.54241 -10.01469 -9.97116 -9.36254 -8.18875 -6.27009 -0.19329 0.15291 1.40922 1.43042 1.52195 2.11950 2.18436 2.42221 2.66484 2.97400 3.16739 3.21404 3.32888 3.42146 3.53641 3.87800 4.05412 4.16445 4.23993 4.32706 4.41365 4.42108 4.46891 4.65584 4.74006 4.75503 4.80936 4.85351 4.99809 5.02623 5.07795 5.19240 5.48110 5.52714 5.63247 5.80131 5.97874 6.21814 6.34805 6.52226 6.84441 6.84929 6.96623 7.41735 8.92110 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.036775 B = 0.002808 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.195997 B = 9970.891276 C =10298.595749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.072 3.928 3 N -0.465 5.465 4 C 0.047 3.953 5 C 0.041 3.959 6 N -0.457 5.457 7 C 0.074 3.926 8 C -0.062 4.062 9 C 0.077 3.923 10 N -0.694 5.694 11 C 0.079 3.921 12 C 0.020 3.980 13 H 0.122 0.878 14 C 0.266 3.734 15 N -0.512 5.512 16 C 0.037 3.963 17 C -0.538 4.538 18 H 0.055 0.945 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.949 3.051 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.202 0.798 29 H 0.201 0.799 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.353 0.647 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.000 1.000 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.916 16.487 -12.991 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.067 4.067 3 N -0.181 5.181 4 C -0.113 4.113 5 C -0.119 4.119 6 N -0.172 5.172 7 C -0.067 4.067 8 C -0.100 4.100 9 C -0.053 4.053 10 N -0.327 5.327 11 C -0.052 4.052 12 C -0.002 4.002 13 H 0.139 0.861 14 C -0.050 4.050 15 N -0.190 5.190 16 C -0.002 4.002 17 C -0.576 4.576 18 H 0.074 0.926 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.775 3.225 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.200 1.200 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.218 0.782 29 H 0.217 0.783 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.172 0.828 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.744 17.004 -13.568 24.262 hybrid contribution 0.806 -1.192 0.882 1.687 sum 11.550 15.812 -12.686 23.332 Atomic orbital electron populations 1.20850 0.86690 1.04653 1.04102 1.22396 0.99339 0.88973 0.96025 1.68342 1.10296 1.29570 1.09895 1.24339 0.90257 1.01358 0.95375 1.24325 1.03393 0.88179 0.95973 1.68303 1.08571 1.31278 1.09085 1.22122 0.90694 0.96756 0.97114 1.20487 1.00105 0.91727 0.97726 1.21713 0.96110 0.91919 0.95560 1.60417 1.52245 1.06230 1.13779 1.21852 0.99146 0.94168 0.89996 1.19162 0.84552 0.98621 0.97831 0.86053 1.29219 0.94653 0.90341 0.90794 1.80889 1.13490 1.11823 1.12793 1.18995 0.97449 0.94363 0.89412 1.21571 1.40050 1.03326 0.92664 0.92636 1.25729 0.96259 1.01522 0.95375 1.70037 1.48839 1.39586 0.98013 0.85683 0.78826 0.80706 0.77294 1.19148 1.21113 1.20029 0.89594 0.90003 0.88737 0.78175 0.78259 0.89374 0.87882 0.94974 0.91309 0.82810 0.91785 0.91173 0.94745 0.98148 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.79 71.24 0.70 -0.98 16 2 C 0.07 1.42 6.79 42.53 0.29 1.71 16 3 N -0.47 -9.28 10.42 -183.30 -1.91 -11.19 16 4 C 0.05 0.67 11.23 84.68 0.95 1.62 16 5 C 0.04 0.60 11.23 84.68 0.95 1.55 16 6 N -0.46 -9.22 10.42 -183.29 -1.91 -11.13 16 7 C 0.07 1.46 6.04 42.53 0.26 1.71 16 8 C -0.06 -1.09 5.38 29.85 0.16 -0.93 16 9 C 0.08 1.52 5.67 86.30 0.49 2.01 16 10 N -0.69 -15.65 6.20 -513.88 -3.19 -18.84 16 11 C 0.08 2.13 5.05 86.30 0.44 2.56 16 12 C 0.02 0.70 2.35 -12.60 -0.03 0.67 16 13 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 14 C 0.27 10.68 13.66 89.47 1.22 11.90 16 15 N -0.51 -22.64 18.52 19.98 0.37 -22.27 16 16 C 0.04 1.67 4.42 29.85 0.13 1.80 16 17 C -0.54 -28.25 8.60 25.60 0.22 -28.03 16 18 H 0.06 2.88 7.59 -2.91 -0.02 2.85 16 19 C 0.01 0.54 5.46 84.65 0.46 1.00 16 20 N -0.92 -53.06 13.29 21.45 0.28 -52.78 16 21 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 1.32 5.95 -2.39 -0.01 1.31 16 28 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 29 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 1.67 5.94 -2.39 -0.01 1.66 16 32 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.35 6.87 8.73 -89.70 -0.78 6.09 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 37 H 0.03 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -68.38 339.42 2.18 -66.20 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.28 Total: 8.12 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 6.24 Total: -3.42 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -6.35 Total: -116.20 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -68.38 2.18 -66.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591767866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.754 kcal (2) G-P(sol) polarization free energy of solvation -68.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds