Wall clock time and date at job start Mon Mar 30 2020 01:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.37095 * 125.10322 * 2 1 4 4 H 0.97001 * 124.98686 * 0.02562 * 3 2 1 5 5 C 1.36774 * 110.02469 * 180.02562 * 3 2 1 6 6 N 1.33230 * 134.29831 * 180.02562 * 5 3 2 7 7 C 1.31529 * 120.71310 * 179.97438 * 6 5 3 8 8 N 1.32100 * 122.71861 * 0.02562 * 7 6 5 9 9 C 1.32970 * 121.02725 * 359.97438 * 8 7 6 10 10 N 1.38324 * 120.83636 * 179.97438 * 9 8 7 11 11 C 1.46496 * 119.99953 * 359.97438 * 10 9 8 12 12 C 1.53006 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46672 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46691 * 119.99941 * 18 16 14 21 21 H 1.48497 * 109.47025 * 240.00323 * 18 16 14 22 22 C 1.40336 * 118.32435 * 0.24650 * 9 8 7 23 23 C 1.34305 * 125.09389 * 180.02562 * 2 1 3 24 24 C 1.50701 * 126.60109 * 0.02562 * 23 2 1 25 25 H 1.08994 * 109.47568 * 89.97227 * 1 2 3 26 26 H 1.09005 * 109.47162 * 209.98128 * 1 2 3 27 27 H 1.09003 * 109.46435 * 329.97316 * 1 2 3 28 28 H 1.08000 * 118.63478 * 180.02562 * 7 6 5 29 29 H 0.96998 * 119.99856 * 180.02562 * 10 9 8 30 30 H 1.09001 * 109.47464 * 60.00621 * 11 10 9 31 31 H 1.09001 * 109.47459 * 300.00337 * 11 10 9 32 32 H 1.09001 * 109.47002 * 299.99701 * 12 11 10 33 33 H 1.08993 * 109.46955 * 60.00138 * 12 11 10 34 34 H 1.09001 * 109.47289 * 299.99953 * 13 12 11 35 35 H 1.09004 * 109.47261 * 59.99697 * 13 12 11 36 36 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.47380 * 89.97585 * 24 23 2 38 38 H 1.09003 * 109.46896 * 209.97513 * 24 23 2 39 39 H 1.08999 * 109.46517 * 329.96833 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.1216 0.0000 4 1 1.9651 2.0336 0.0004 5 6 3.6160 0.7658 -0.0006 6 7 4.7625 1.4445 -0.0004 7 6 5.9166 0.8135 -0.0006 8 7 6.0100 -0.5041 -0.0015 9 6 4.9219 -1.2684 -0.0017 10 7 5.0243 -2.6478 -0.0032 11 6 6.3438 -3.2844 -0.0051 12 6 6.1763 -4.8052 -0.0071 13 6 7.5543 -5.4700 -0.0085 14 6 7.3893 -6.9679 -0.0098 15 1 6.4005 -7.4024 -0.0101 16 6 8.5008 -7.7840 -0.0117 17 7 9.7049 -7.2550 -0.0118 18 14 8.2963 -9.6407 -0.0140 19 1 6.8504 -9.9794 -0.0141 20 1 8.9371 -10.2076 -1.2278 21 1 8.9387 -10.2110 1.1973 22 6 3.6670 -0.6402 -0.0063 23 6 2.2792 -1.0989 -0.0005 24 6 1.8058 -2.5297 -0.0017 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3634 -0.8902 0.5136 27 1 -0.3632 0.8898 0.5143 28 1 6.8255 1.3970 0.0000 29 1 4.2225 -3.1937 -0.0037 30 1 6.8951 -2.9804 0.8847 31 1 6.8935 -2.9785 -0.8953 32 1 5.6265 -5.1114 0.8829 33 1 5.6252 -5.1088 -0.8971 34 1 8.1045 -5.1640 -0.8982 35 1 8.1051 -5.1663 0.8818 36 1 10.4868 -7.8290 -0.0127 37 1 1.6917 -2.8738 -1.0296 38 1 2.5368 -3.1545 0.5116 39 1 0.8469 -2.5954 0.5123 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591908499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:08 Heat of formation + Delta-G solvation = 39.776177 kcal Electronic energy + Delta-G solvation = -20152.811708 eV Core-core repulsion = 17094.241083 eV Total energy + Delta-G solvation = -3058.570625 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.82786 -39.88878 -37.98420 -35.80713 -34.30948 -33.20084 -32.84694 -31.68406 -29.29854 -28.32921 -26.79500 -25.25748 -23.82440 -23.38725 -22.07673 -20.24490 -19.71222 -18.56844 -18.12807 -17.19613 -16.78239 -16.64516 -16.46998 -16.15995 -15.38971 -15.05971 -14.84966 -14.30745 -14.18853 -14.00710 -13.82935 -13.68727 -13.63590 -13.17095 -12.94074 -12.87384 -12.80102 -12.54076 -12.32103 -12.14129 -11.53898 -11.50934 -11.45285 -11.17248 -10.54972 -10.12511 -10.12056 -9.73232 -8.42692 -8.18632 -6.29852 0.08095 0.47935 1.42400 1.42468 1.55766 1.58592 1.73874 2.11331 2.43246 3.01833 3.15139 3.38831 3.54810 3.70963 3.93805 4.05956 4.18956 4.24057 4.29445 4.45686 4.57505 4.68830 4.76123 4.90820 4.94629 4.96971 4.98059 5.11114 5.14810 5.16635 5.31275 5.51650 5.57880 5.71822 5.81706 5.84998 5.87189 6.12518 6.25225 6.41575 6.76225 6.87392 7.39491 7.44888 8.93650 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.027698 B = 0.003328 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.656714 B = 8411.958447 C = 9386.260752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.071 3.929 3 N -0.556 5.556 4 H 0.431 0.569 5 C 0.318 3.682 6 N -0.588 5.588 7 C 0.349 3.651 8 N -0.623 5.623 9 C 0.471 3.529 10 N -0.694 5.694 11 C 0.142 3.858 12 C -0.105 4.105 13 C 0.027 3.973 14 C -0.541 4.541 15 H 0.065 0.935 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.259 1.259 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.280 4.280 23 C -0.156 4.156 24 C -0.083 4.083 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.224 0.776 29 H 0.416 0.584 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.064 0.936 34 H -0.006 1.006 35 H -0.006 1.006 36 H 0.263 0.737 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.318 15.734 0.033 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.036 4.036 3 N -0.165 5.165 4 H 0.271 0.729 5 C 0.079 3.921 6 N -0.315 5.315 7 C 0.058 3.942 8 N -0.353 5.353 9 C 0.222 3.778 10 N -0.328 5.328 11 C 0.019 3.981 12 C -0.143 4.143 13 C -0.010 4.010 14 C -0.579 4.579 15 H 0.083 0.917 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.183 1.183 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.294 4.294 23 C -0.164 4.164 24 C -0.140 4.140 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.105 0.895 28 H 0.240 0.760 29 H 0.256 0.744 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.317 16.254 0.034 26.019 hybrid contribution -0.126 -0.940 -0.007 0.948 sum -20.443 15.314 0.027 25.543 Atomic orbital electron populations 1.20601 0.83703 1.05329 1.04532 1.20689 0.94924 0.83628 1.04327 1.41391 1.01391 1.09955 1.63747 0.72900 1.18354 0.86827 0.89244 0.97713 1.67420 0.96670 1.41127 1.26235 1.24894 0.94772 0.86394 0.88172 1.68126 1.30886 1.08161 1.28146 1.18314 0.87782 0.85888 0.85803 1.44808 1.09708 1.01624 1.76611 1.21243 0.83408 0.92483 1.01016 1.21622 0.99081 0.91824 1.01724 1.18902 0.92292 0.94641 0.95196 1.21709 0.93046 0.92730 1.50417 0.91706 1.26012 0.94932 1.04310 0.94783 1.70115 0.98495 1.37110 1.51703 0.85374 0.78809 0.79061 0.77646 1.18263 1.20547 1.20534 1.20078 0.94404 0.95385 1.19526 1.20184 0.88522 0.96816 1.10841 1.20319 1.01948 0.88952 1.02790 0.89001 0.88124 0.89544 0.76018 0.74359 0.92854 0.92864 0.91787 0.91770 0.98778 0.98779 0.92798 0.90591 0.92835 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.18 71.24 0.73 0.13 16 2 C 0.07 1.20 7.10 40.84 0.29 1.49 16 3 N -0.56 -10.76 6.03 -180.58 -1.09 -11.85 16 4 H 0.43 5.67 8.96 -92.71 -0.83 4.84 16 5 C 0.32 8.86 8.48 133.94 1.14 10.00 16 6 N -0.59 -17.20 10.47 -197.88 -2.07 -19.28 16 7 C 0.35 10.13 12.23 180.87 2.21 12.35 16 8 N -0.62 -21.22 9.71 -197.16 -1.92 -23.13 16 9 C 0.47 15.58 7.55 133.42 1.01 16.58 16 10 N -0.69 -21.96 5.69 -344.16 -1.96 -23.92 16 11 C 0.14 5.21 5.74 86.38 0.50 5.71 16 12 C -0.10 -4.17 5.27 30.60 0.16 -4.01 16 13 C 0.03 1.44 4.97 29.85 0.15 1.59 16 14 C -0.54 -30.44 9.11 25.60 0.23 -30.20 16 15 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 16 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 17 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 18 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 C -0.28 -8.20 6.32 -20.11 -0.13 -8.33 16 23 C -0.16 -3.41 6.31 -18.70 -0.12 -3.52 16 24 C -0.08 -1.35 9.60 71.24 0.68 -0.67 16 25 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.10 0.48 7.06 -2.38 -0.02 0.46 16 27 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.22 4.73 8.06 -2.91 -0.02 4.70 16 29 H 0.42 11.33 5.72 -92.71 -0.53 10.80 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 36 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 0.97 6.13 -2.39 -0.01 0.96 16 39 H 0.10 1.02 7.07 -2.39 -0.02 1.00 16 Total: -1.00 -73.23 326.71 2.31 -70.93 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -0.28 Total: 16.69 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 7.31 Total: 1.42 kcal Atomic # 7 Polarization: -128.26 SS G_CDS: -6.75 Total: -135.01 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -73.23 2.31 -70.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591908499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.703 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds