Wall clock time and date at job start Mon Mar 30 2020 02:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47387 * 2 1 4 4 C 1.46904 * 110.99998 * 199.45586 * 3 2 1 5 5 C 1.50705 * 109.46774 * 66.04924 * 4 3 2 6 6 H 1.07993 * 120.00429 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99360 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99365 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00565 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46982 * 90.00343 * 9 7 5 11 11 H 1.48498 * 109.47604 * 210.00279 * 9 7 5 12 12 H 1.48501 * 109.47282 * 330.00759 * 9 7 5 13 13 C 1.38325 * 110.99995 * 75.50445 * 3 2 1 14 14 N 1.32993 * 120.83721 * 59.04677 * 13 3 2 15 15 C 1.32079 * 121.02645 * 180.02562 * 14 13 3 16 16 N 1.31553 * 122.72168 * 0.23305 * 15 14 13 17 17 C 1.33206 * 120.70828 * 359.53179 * 16 15 14 18 18 N 1.36776 * 134.30613 * 180.12522 * 17 16 15 19 19 H 0.97005 * 124.98310 * 0.32085 * 18 17 16 20 20 C 1.37096 * 110.02881 * 180.29694 * 18 17 16 21 21 C 1.50700 * 125.09702 * 180.02562 * 20 18 17 22 22 C 1.34305 * 109.80638 * 0.02562 * 20 18 17 23 23 C 1.50702 * 126.59551 * 180.02562 * 22 20 18 24 24 C 1.40306 * 120.83676 * 239.06638 * 13 3 2 25 25 H 1.09003 * 109.47224 * 56.08767 * 1 2 3 26 26 H 1.08989 * 109.47539 * 176.09269 * 1 2 3 27 27 H 1.09003 * 109.47238 * 296.09595 * 1 2 3 28 28 H 1.09002 * 109.46961 * 239.99883 * 2 1 3 29 29 H 1.08998 * 109.46908 * 120.00544 * 2 1 3 30 30 H 1.08996 * 109.47161 * 186.04659 * 4 3 2 31 31 H 1.08999 * 109.47109 * 306.05063 * 4 3 2 32 32 H 0.97006 * 119.99790 * 180.02562 * 8 7 5 33 33 H 1.08001 * 118.63690 * 179.97438 * 15 14 13 34 34 H 1.08996 * 109.46966 * 89.97468 * 21 20 18 35 35 H 1.09002 * 109.47038 * 209.97285 * 21 20 18 36 36 H 1.08997 * 109.47023 * 329.97413 * 21 20 18 37 37 H 1.08994 * 109.47224 * 85.74411 * 23 22 20 38 38 H 1.09003 * 109.47055 * 205.74852 * 23 22 20 39 39 H 1.08997 * 109.46605 * 325.74684 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4144 1.4501 -0.4568 5 6 3.4877 1.0440 -1.9062 6 1 2.5884 0.7649 -2.4350 7 6 4.7032 1.0277 -2.5569 8 7 4.7672 0.6727 -3.8217 9 14 6.2589 1.5097 -1.6422 10 1 6.8587 0.3041 -1.0161 11 1 7.2286 2.1070 -2.5951 12 1 5.9262 2.5012 -0.5879 13 6 1.8802 1.9600 1.2503 14 7 2.4729 1.4280 2.3154 15 6 2.3418 1.9737 3.5110 16 7 1.6260 3.0568 3.7237 17 6 0.9981 3.6654 2.7189 18 7 0.2040 4.7747 2.6205 19 1 -0.0421 5.3500 3.3618 20 6 -0.1925 4.9545 1.3205 21 6 -1.0746 6.0739 0.8307 22 6 0.3229 3.9835 0.5491 23 6 0.1289 3.8179 -0.9362 24 6 1.1096 3.1191 1.4268 25 1 -0.3634 0.5734 -0.8529 26 1 -0.3634 -1.0251 -0.0700 27 1 -0.3634 0.4521 0.9229 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.7858 2.4688 -0.3457 31 1 4.0247 0.7736 0.1414 32 1 5.6224 0.6609 -4.2794 33 1 2.8396 1.5093 4.3493 34 1 -0.4561 6.9229 0.5395 35 1 -1.6510 5.7325 -0.0292 36 1 -1.7545 6.3759 1.6273 37 1 0.8674 4.4176 -1.4682 38 1 0.2519 2.7685 -1.2040 39 1 -0.8730 4.1479 -1.2107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591919232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:31 Heat of formation + Delta-G solvation = 87.795148 kcal Electronic energy + Delta-G solvation = -21630.422603 eV Core-core repulsion = 18573.934237 eV Total energy + Delta-G solvation = -3056.488367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73741 -38.94312 -37.00198 -33.23844 -32.51118 -31.69720 -31.34637 -30.17839 -28.30220 -27.02166 -25.65123 -23.43842 -22.43252 -22.18688 -20.51929 -18.87275 -18.35159 -16.95413 -16.46506 -15.86950 -15.59620 -14.79121 -14.74330 -14.24389 -13.83441 -13.58387 -13.25971 -13.18232 -12.79572 -12.59030 -12.50341 -12.38367 -12.16052 -12.10740 -11.61555 -11.35907 -11.22890 -10.86637 -10.60974 -10.42424 -10.38602 -9.90046 -9.82442 -9.37064 -8.92197 -8.75873 -8.60325 -7.80442 -7.61491 -6.07955 -4.05742 1.05553 1.61475 2.70168 2.74618 3.29669 3.36700 3.41582 4.16829 4.21172 4.41573 4.51216 4.67391 4.79355 5.03003 5.20577 5.25833 5.37667 5.44406 5.46822 5.70993 5.74268 5.81627 5.91431 6.03801 6.20629 6.26230 6.33807 6.38609 6.49452 6.63155 6.69583 6.86706 6.93154 6.94801 7.02608 7.16764 7.52322 7.64822 7.70444 8.02699 8.52574 8.59271 8.98999 9.53135 11.04412 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.006346 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.910247 B = 4411.427814 C = 4700.922855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 N -0.478 5.478 4 C 0.173 3.827 5 C -0.510 4.510 6 H 0.086 0.914 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.871 3.129 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.422 3.578 14 N -0.574 5.574 15 C 0.322 3.678 16 N -0.551 5.551 17 C 0.318 3.682 18 N -0.572 5.572 19 H 0.416 0.584 20 C 0.048 3.952 21 C -0.084 4.084 22 C -0.104 4.104 23 C -0.082 4.082 24 C -0.183 4.183 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.100 0.900 29 H 0.041 0.959 30 H 0.026 0.974 31 H 0.002 0.998 32 H 0.264 0.736 33 H 0.193 0.807 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.302 7.755 10.877 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 N -0.201 5.201 4 C 0.049 3.951 5 C -0.548 4.548 6 H 0.104 0.896 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.698 3.302 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.180 3.820 14 N -0.294 5.294 15 C 0.031 3.969 16 N -0.273 5.273 17 C 0.077 3.923 18 N -0.181 5.181 19 H 0.253 0.747 20 C -0.057 4.057 21 C -0.142 4.142 22 C -0.112 4.112 23 C -0.139 4.139 24 C -0.194 4.194 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.209 0.791 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.081 7.706 11.226 17.555 hybrid contribution 1.069 0.494 0.912 1.489 sum -10.012 8.201 12.138 17.743 Atomic orbital electron populations 1.21775 0.96153 1.00786 1.01324 1.22126 0.94448 0.87590 1.02845 1.60137 1.24973 1.19332 1.15701 1.20205 0.81320 0.96671 0.96922 1.20931 0.95597 1.45303 0.92959 0.89644 1.24807 0.98556 0.94767 0.94699 1.69880 1.25727 1.48196 1.09689 0.86927 0.83822 0.79449 0.79996 1.20085 1.21087 1.19353 1.20063 0.84915 0.87711 0.89277 1.68733 1.24933 1.35382 1.00387 1.24358 0.91335 0.87285 0.93927 1.67346 1.13510 1.12379 1.34040 1.18296 0.93927 0.89479 0.90584 1.41260 1.43877 1.23682 1.09254 0.74708 1.20138 1.03152 1.00059 0.82317 1.20393 0.97408 0.94685 1.01666 1.20056 1.00398 0.94484 0.96254 1.20263 1.00136 1.04993 0.88557 1.20172 1.05288 0.99446 0.94485 0.91753 0.92757 0.94459 0.88131 0.94038 0.95646 0.97980 0.92575 0.79100 0.90526 0.89421 0.91630 0.91372 0.89134 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.97 37.16 0.37 -1.97 16 2 C 0.06 1.11 5.49 -3.83 -0.02 1.09 16 3 N -0.48 -10.23 3.52 -174.23 -0.61 -10.85 16 4 C 0.17 4.29 3.62 -4.97 -0.02 4.28 16 5 C -0.51 -14.06 8.79 -34.44 -0.30 -14.36 16 6 H 0.09 2.51 7.55 -52.49 -0.40 2.11 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 9 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 13 C 0.42 8.57 4.71 -154.72 -0.73 7.84 16 14 N -0.57 -11.24 9.62 -13.67 -0.13 -11.37 16 15 C 0.32 5.39 12.23 -92.12 -1.13 4.26 16 16 N -0.55 -9.30 10.47 -13.89 -0.15 -9.45 16 17 C 0.32 5.36 8.48 -155.85 -1.32 4.04 16 18 N -0.57 -7.46 6.03 -8.42 -0.05 -7.51 16 19 H 0.42 4.04 8.96 -40.82 -0.37 3.68 16 20 C 0.05 0.61 7.10 -81.63 -0.58 0.04 16 21 C -0.08 -0.69 10.18 36.01 0.37 -0.32 16 22 C -0.10 -1.65 6.31 -102.83 -0.65 -2.30 16 23 C -0.08 -1.23 10.06 36.01 0.36 -0.87 16 24 C -0.18 -3.39 6.35 -105.00 -0.67 -4.06 16 25 H 0.06 1.05 7.79 -51.93 -0.40 0.64 16 26 H 0.05 0.77 8.14 -51.94 -0.42 0.35 16 27 H 0.04 0.62 7.80 -51.93 -0.41 0.21 16 28 H 0.10 2.14 6.58 -51.93 -0.34 1.79 16 29 H 0.04 0.82 7.45 -51.93 -0.39 0.43 16 30 H 0.03 0.67 7.11 -51.93 -0.37 0.30 16 31 H 0.00 0.06 7.55 -51.93 -0.39 -0.33 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.65 7.14 -51.93 -0.37 0.28 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.57 6.93 -51.93 -0.36 1.21 16 39 H 0.05 0.64 7.21 -51.93 -0.37 0.27 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -32.28 321.60 -9.85 -42.13 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.45 Total: 1.52 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -4.41 Total: -0.33 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -0.17 Total: -65.21 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.28 -9.85 -42.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591919232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.924 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds