Wall clock time and date at job start Mon Mar 30 2020 02:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47387 * 2 1 4 4 C 1.46904 * 110.99998 * 199.45586 * 3 2 1 5 5 C 1.50705 * 109.46774 * 66.04924 * 4 3 2 6 6 H 1.07993 * 120.00429 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99360 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99365 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00565 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46982 * 90.00343 * 9 7 5 11 11 H 1.48498 * 109.47604 * 210.00279 * 9 7 5 12 12 H 1.48501 * 109.47282 * 330.00759 * 9 7 5 13 13 C 1.38325 * 110.99995 * 75.50445 * 3 2 1 14 14 N 1.32993 * 120.83721 * 59.04677 * 13 3 2 15 15 C 1.32079 * 121.02645 * 180.02562 * 14 13 3 16 16 N 1.31553 * 122.72168 * 0.23305 * 15 14 13 17 17 C 1.33206 * 120.70828 * 359.53179 * 16 15 14 18 18 N 1.36776 * 134.30613 * 180.12522 * 17 16 15 19 19 H 0.97005 * 124.98310 * 0.32085 * 18 17 16 20 20 C 1.37096 * 110.02881 * 180.29694 * 18 17 16 21 21 C 1.50700 * 125.09702 * 180.02562 * 20 18 17 22 22 C 1.34305 * 109.80638 * 0.02562 * 20 18 17 23 23 C 1.50702 * 126.59551 * 180.02562 * 22 20 18 24 24 C 1.40306 * 120.83676 * 239.06638 * 13 3 2 25 25 H 1.09003 * 109.47224 * 56.08767 * 1 2 3 26 26 H 1.08989 * 109.47539 * 176.09269 * 1 2 3 27 27 H 1.09003 * 109.47238 * 296.09595 * 1 2 3 28 28 H 1.09002 * 109.46961 * 239.99883 * 2 1 3 29 29 H 1.08998 * 109.46908 * 120.00544 * 2 1 3 30 30 H 1.08996 * 109.47161 * 186.04659 * 4 3 2 31 31 H 1.08999 * 109.47109 * 306.05063 * 4 3 2 32 32 H 0.97006 * 119.99790 * 180.02562 * 8 7 5 33 33 H 1.08001 * 118.63690 * 179.97438 * 15 14 13 34 34 H 1.08996 * 109.46966 * 89.97468 * 21 20 18 35 35 H 1.09002 * 109.47038 * 209.97285 * 21 20 18 36 36 H 1.08997 * 109.47023 * 329.97413 * 21 20 18 37 37 H 1.08994 * 109.47224 * 85.74411 * 23 22 20 38 38 H 1.09003 * 109.47055 * 205.74852 * 23 22 20 39 39 H 1.08997 * 109.46605 * 325.74684 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4144 1.4501 -0.4568 5 6 3.4877 1.0440 -1.9062 6 1 2.5884 0.7649 -2.4350 7 6 4.7032 1.0277 -2.5569 8 7 4.7672 0.6727 -3.8217 9 14 6.2589 1.5097 -1.6422 10 1 6.8587 0.3041 -1.0161 11 1 7.2286 2.1070 -2.5951 12 1 5.9262 2.5012 -0.5879 13 6 1.8802 1.9600 1.2503 14 7 2.4729 1.4280 2.3154 15 6 2.3418 1.9737 3.5110 16 7 1.6260 3.0568 3.7237 17 6 0.9981 3.6654 2.7189 18 7 0.2040 4.7747 2.6205 19 1 -0.0421 5.3500 3.3618 20 6 -0.1925 4.9545 1.3205 21 6 -1.0746 6.0739 0.8307 22 6 0.3229 3.9835 0.5491 23 6 0.1289 3.8179 -0.9362 24 6 1.1096 3.1191 1.4268 25 1 -0.3634 0.5734 -0.8529 26 1 -0.3634 -1.0251 -0.0700 27 1 -0.3634 0.4521 0.9229 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.7858 2.4688 -0.3457 31 1 4.0247 0.7736 0.1414 32 1 5.6224 0.6609 -4.2794 33 1 2.8396 1.5093 4.3493 34 1 -0.4561 6.9229 0.5395 35 1 -1.6510 5.7325 -0.0292 36 1 -1.7545 6.3759 1.6273 37 1 0.8674 4.4176 -1.4682 38 1 0.2519 2.7685 -1.2040 39 1 -0.8730 4.1479 -1.2107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591919232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:30 Heat of formation + Delta-G solvation = 68.215743 kcal Electronic energy + Delta-G solvation = -21631.271630 eV Core-core repulsion = 18573.934237 eV Total energy + Delta-G solvation = -3057.337393 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.98728 -40.27982 -38.52264 -34.94490 -34.20456 -32.96568 -32.48077 -31.84350 -29.61370 -28.59855 -26.89301 -24.85275 -24.06399 -23.63284 -22.12005 -20.06132 -19.68882 -18.92380 -17.88343 -17.19536 -17.07022 -16.43259 -16.13910 -15.68466 -15.52491 -14.83431 -14.68054 -14.50443 -14.29348 -14.15342 -13.85654 -13.56731 -13.23814 -13.08690 -12.95357 -12.88509 -12.78355 -12.67468 -12.35831 -12.04266 -11.80580 -11.74939 -11.50345 -11.27485 -10.81274 -10.33207 -10.02579 -9.47422 -8.78568 -8.30202 -6.32345 -0.28169 0.27795 1.30324 1.31934 1.41990 1.55514 1.63064 2.30857 2.70119 2.81570 3.03000 3.29575 3.49433 3.71136 3.83470 4.10461 4.22886 4.33305 4.43773 4.51366 4.63686 4.66196 4.75464 4.79493 4.83343 4.95683 5.03844 5.09504 5.12525 5.15314 5.19996 5.28337 5.35133 5.44071 5.74785 5.79433 5.89667 5.92855 6.22005 6.53401 6.60243 6.72258 7.19142 7.29953 8.85208 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.006346 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.910247 B = 4411.427814 C = 4700.922855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.058 3.942 3 N -0.478 5.478 4 C 0.191 3.809 5 C -0.508 4.508 6 H 0.056 0.944 7 C 0.024 3.976 8 N -0.935 5.935 9 Si 0.932 3.068 10 H -0.267 1.267 11 H -0.275 1.275 12 H -0.268 1.268 13 C 0.390 3.610 14 N -0.595 5.595 15 C 0.312 3.688 16 N -0.545 5.545 17 C 0.304 3.696 18 N -0.555 5.555 19 H 0.435 0.565 20 C 0.087 3.913 21 C -0.085 4.085 22 C -0.150 4.150 23 C -0.073 4.073 24 C -0.201 4.201 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.011 0.989 31 H -0.009 1.009 32 H 0.269 0.731 33 H 0.227 0.773 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 9.840 12.747 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.068 4.068 3 N -0.201 5.201 4 C 0.066 3.934 5 C -0.546 4.546 6 H 0.074 0.926 7 C -0.175 4.175 8 N -0.576 5.576 9 Si 0.757 3.243 10 H -0.192 1.192 11 H -0.200 1.200 12 H -0.193 1.193 13 C 0.149 3.851 14 N -0.316 5.316 15 C 0.021 3.979 16 N -0.266 5.266 17 C 0.062 3.938 18 N -0.165 5.165 19 H 0.276 0.724 20 C -0.019 4.019 21 C -0.142 4.142 22 C -0.157 4.157 23 C -0.131 4.131 24 C -0.212 4.212 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.029 0.971 31 H 0.009 0.991 32 H 0.078 0.922 33 H 0.243 0.757 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.344 9.803 13.129 20.515 hybrid contribution 1.311 -0.074 0.374 1.366 sum -11.033 9.729 13.504 19.968 Atomic orbital electron populations 1.21632 0.93432 1.02267 1.01093 1.22098 0.96655 0.86796 1.01267 1.60005 1.22537 1.20084 1.17478 1.19799 0.83658 0.95039 0.94941 1.21042 0.94641 1.44654 0.94284 0.92608 1.25552 1.01714 0.94832 0.95418 1.69994 1.26784 1.49595 1.11184 0.85950 0.80120 0.79360 0.78896 1.19217 1.19964 1.19262 1.20049 0.87126 0.89070 0.88827 1.68649 1.25539 1.36190 1.01208 1.25025 0.91511 0.87413 0.93912 1.67440 1.13173 1.12237 1.33780 1.18549 0.94674 0.90598 0.90018 1.41342 1.42416 1.22554 1.10203 0.72433 1.20829 1.00526 0.99234 0.81335 1.20643 0.97317 0.93182 1.03027 1.20224 1.02653 0.96114 0.96757 1.20136 1.01718 1.02801 0.88406 1.20487 1.05328 0.99150 0.96248 0.91954 0.90338 0.94551 0.90605 0.94466 0.97143 0.99091 0.92226 0.75658 0.88895 0.88168 0.88720 0.92704 0.92276 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.97 71.98 0.72 -3.48 16 2 C 0.06 2.40 5.49 86.30 0.47 2.87 16 3 N -0.48 -21.29 3.52 -705.14 -2.48 -23.78 16 4 C 0.19 9.84 3.62 85.56 0.31 10.15 16 5 C -0.51 -29.26 8.79 25.60 0.23 -29.04 16 6 H 0.06 3.47 7.55 -2.91 -0.02 3.45 16 7 C 0.02 1.38 5.47 84.66 0.46 1.84 16 8 N -0.94 -57.44 13.96 21.45 0.30 -57.14 16 9 Si 0.93 45.53 27.47 68.60 1.88 47.42 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.96 6.54 99.48 0.65 -12.31 16 13 C 0.39 16.13 4.71 133.40 0.63 16.76 16 14 N -0.59 -23.46 9.62 -197.17 -1.90 -25.35 16 15 C 0.31 10.13 12.23 180.87 2.21 12.34 16 16 N -0.55 -17.55 10.47 -197.87 -2.07 -19.62 16 17 C 0.30 9.75 8.48 133.96 1.14 10.89 16 18 N -0.56 -12.73 6.03 -180.57 -1.09 -13.82 16 19 H 0.43 6.71 8.96 -92.70 -0.83 5.88 16 20 C 0.09 1.94 7.10 40.84 0.29 2.23 16 21 C -0.08 -0.97 10.18 71.24 0.73 -0.25 16 22 C -0.15 -4.59 6.31 -18.70 -0.12 -4.70 16 23 C -0.07 -2.18 10.06 71.24 0.72 -1.47 16 24 C -0.20 -7.39 6.35 -20.11 -0.13 -7.52 16 25 H 0.06 2.08 7.79 -2.39 -0.02 2.06 16 26 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.04 1.20 7.80 -2.39 -0.02 1.18 16 28 H 0.08 3.43 6.58 -2.39 -0.02 3.41 16 29 H 0.04 1.52 7.45 -2.39 -0.02 1.51 16 30 H 0.01 0.57 7.11 -2.39 -0.02 0.55 16 31 H -0.01 -0.46 7.55 -2.39 -0.02 -0.48 16 32 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 33 H 0.23 5.33 8.06 -2.91 -0.02 5.31 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 1.00 7.14 -2.39 -0.02 0.98 16 36 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 2.12 6.93 -2.39 -0.02 2.10 16 39 H 0.09 1.91 7.21 -2.39 -0.02 1.90 16 Total: -1.00 -72.70 321.60 2.48 -70.22 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.18 Total: 11.44 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 7.65 Total: 10.63 kcal Atomic # 7 Polarization: -132.47 SS G_CDS: -7.24 Total: -139.71 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.88 Total: 47.42 kcal Total: -72.70 2.48 -70.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591919232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.436 kcal (2) G-P(sol) polarization free energy of solvation -72.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds