Wall clock time and date at job start Mon Mar 30 2020 01:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47465 * 335.59389 * 3 2 1 5 5 N 1.46899 * 109.46771 * 179.60470 * 4 3 2 6 6 C 1.46893 * 111.00437 * 297.96328 * 5 4 3 7 7 C 1.50710 * 109.47122 * 292.95339 * 6 5 4 8 8 H 1.08002 * 119.99865 * 354.96542 * 7 6 5 9 9 C 1.37868 * 119.99851 * 174.96515 * 7 6 5 10 10 N 1.31520 * 120.00599 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99901 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46674 * 59.99837 * 11 9 7 13 13 H 1.48500 * 109.47228 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47099 * 300.00110 * 11 9 7 15 15 C 1.46901 * 111.00087 * 61.91913 * 5 4 3 16 16 C 1.50705 * 109.46759 * 66.04074 * 15 5 4 17 17 C 1.39788 * 125.89459 * 95.00655 * 16 15 5 18 18 C 1.35533 * 107.89309 * 179.97438 * 17 16 15 19 19 N 1.34714 * 107.88732 * 359.87410 * 18 17 16 20 20 N 1.30704 * 125.89647 * 274.96818 * 16 15 5 21 21 C 1.47140 * 111.01229 * 180.22530 * 19 18 17 22 22 C 1.54368 * 105.64170 * 342.81239 * 21 19 18 23 23 C 1.51428 * 141.97487 * 179.72914 * 18 17 16 24 24 H 1.08999 * 109.46933 * 215.59176 * 3 2 1 25 25 H 1.09000 * 109.47205 * 95.60167 * 3 2 1 26 26 H 1.08996 * 109.46448 * 59.60983 * 4 3 2 27 27 H 1.08995 * 109.46933 * 299.60658 * 4 3 2 28 28 H 1.09002 * 109.47522 * 52.95143 * 6 5 4 29 29 H 1.08999 * 109.47239 * 172.95860 * 6 5 4 30 30 H 0.96995 * 120.00337 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.47035 * 306.04319 * 15 5 4 32 32 H 1.09000 * 109.47240 * 186.03664 * 15 5 4 33 33 H 1.08000 * 126.05036 * 0.03770 * 17 16 15 34 34 H 1.09002 * 110.23227 * 101.87929 * 21 19 18 35 35 H 1.08995 * 110.22825 * 223.74347 * 21 19 18 36 36 H 1.09001 * 110.97431 * 143.88847 * 22 21 19 37 37 H 1.08996 * 110.97405 * 267.65724 * 22 21 19 38 38 H 1.09006 * 110.48023 * 315.33318 * 23 18 17 39 39 H 1.08999 * 110.48157 * 77.96881 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3127 0.5960 5 7 4.5876 -1.3158 0.5873 6 6 5.1061 -1.2350 -0.7847 7 6 4.7618 -2.5005 -1.5273 8 1 4.2849 -3.3186 -1.0079 9 6 5.0555 -2.6137 -2.8695 10 7 5.6366 -1.6177 -3.5020 11 14 4.6292 -4.1825 -3.7898 12 1 3.1638 -4.4132 -3.7224 13 1 5.0446 -4.0520 -5.2096 14 1 5.3399 -5.3291 -3.1691 15 6 5.1214 -0.2272 1.4167 16 6 4.7708 -0.4779 2.8608 17 6 5.5883 -1.1044 3.8059 18 6 4.9158 -1.1370 4.9821 19 7 3.7183 -0.5505 4.7903 20 7 3.6501 -0.1463 3.4460 21 6 2.9292 -0.5437 6.0323 22 6 3.5927 -1.5905 6.9526 23 6 5.0449 -1.6016 6.4175 24 1 2.9709 0.8365 0.5981 25 1 2.9713 0.1011 -1.0228 26 1 2.7500 -2.1488 0.0019 27 1 2.7612 -1.4097 1.6211 28 1 4.6572 -0.3818 -1.2932 29 1 6.1889 -1.1132 -0.7573 30 1 5.8429 -1.6973 -4.4464 31 1 4.6872 0.7199 1.0965 32 1 6.2051 -0.1854 1.3080 33 1 6.5806 -1.4928 3.6300 34 1 2.9647 0.4422 6.4960 35 1 1.8969 -0.8248 5.8245 36 1 3.5618 -1.2699 7.9940 37 1 3.1248 -2.5676 6.8329 38 1 5.4577 -2.6097 6.4564 39 1 5.6669 -0.9114 6.9874 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593017277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:28 Heat of formation + Delta-G solvation = 122.736481 kcal Electronic energy + Delta-G solvation = -20707.289638 eV Core-core repulsion = 17652.316442 eV Total energy + Delta-G solvation = -3054.973197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53712 -37.92428 -36.28514 -35.60884 -32.64734 -31.11688 -30.36441 -29.56910 -27.64900 -26.56815 -25.12629 -23.48547 -21.82263 -20.43152 -19.90545 -18.87151 -17.27426 -16.71119 -16.21974 -15.77899 -15.24547 -14.66499 -14.45046 -13.98909 -13.92772 -13.75899 -13.43785 -13.28930 -13.01358 -12.57389 -12.41625 -11.98636 -11.93955 -11.82320 -11.77732 -11.42663 -11.38809 -11.16066 -11.04007 -10.74005 -10.59311 -10.22888 -10.12068 -9.88355 -9.29718 -8.88664 -8.44085 -8.27038 -7.32718 -6.04519 -4.05635 2.02228 2.42800 3.00759 3.21601 3.25265 3.35003 3.39120 3.42629 3.94249 4.34136 4.41936 4.47056 4.50193 4.66005 4.99688 5.13288 5.19681 5.28418 5.30250 5.31973 5.47311 5.53460 5.63297 5.64831 5.73405 5.86247 5.97250 6.14361 6.15707 6.36228 6.41842 6.71739 6.93422 7.03546 7.19283 7.27718 7.77201 7.94444 8.03511 8.06669 8.12109 8.47139 9.02009 9.59192 11.05727 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.004630 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.760069 B = 6045.623494 C = 6806.823171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.230 3.770 3 C -0.072 4.072 4 C 0.074 3.926 5 N -0.521 5.521 6 C 0.187 3.813 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.059 3.941 10 N -0.898 5.898 11 Si 0.894 3.106 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.126 3.874 16 C 0.099 3.901 17 C -0.236 4.236 18 C 0.048 3.952 19 N -0.399 5.399 20 N -0.272 5.272 21 C 0.132 3.868 22 C -0.132 4.132 23 C -0.064 4.064 24 H 0.100 0.900 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.007 0.993 29 H 0.033 0.967 30 H 0.262 0.738 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.575 2.587 19.744 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.087 4.087 3 C -0.114 4.114 4 C -0.057 4.057 5 N -0.244 5.244 6 C 0.062 3.938 7 C -0.547 4.547 8 H 0.082 0.918 9 C -0.143 4.143 10 N -0.537 5.537 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.004 4.004 16 C -0.067 4.067 17 C -0.265 4.265 18 C -0.080 4.080 19 N -0.182 5.182 20 N -0.094 5.094 21 C 0.011 3.989 22 C -0.171 4.171 23 C -0.103 4.103 24 H 0.118 0.882 25 H 0.138 0.862 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.024 0.976 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.162 0.838 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.236 2.837 19.632 19.961 hybrid contribution 0.753 -0.420 -0.869 1.225 sum -1.483 2.417 18.762 18.975 Atomic orbital electron populations 1.81101 1.13231 1.09850 1.10334 1.29254 0.95272 0.92240 0.91949 1.20204 0.81613 1.03462 1.06074 1.22040 0.88861 0.94494 1.00295 1.62348 1.05354 1.41806 1.14908 1.19885 0.95679 0.97219 0.81007 1.21086 1.39428 1.00639 0.93509 0.91828 1.24933 0.95295 0.96504 0.97549 1.69926 1.42197 1.31284 1.10295 0.86612 0.78841 0.83710 0.78592 1.20318 1.21408 1.20153 1.20538 1.00813 0.94092 0.84959 1.22361 0.90953 0.96738 0.96663 1.20547 1.03172 1.12190 0.90620 1.22123 0.89637 0.99737 0.96518 1.50017 1.14418 1.46282 1.07474 1.77383 1.21807 1.24403 0.85776 1.22196 0.96045 1.00555 0.80145 1.22818 0.95191 0.99675 0.99389 1.20858 0.97104 1.02996 0.89299 0.88174 0.86186 0.89308 0.91397 0.97571 0.94931 0.92827 0.93533 0.88839 0.83781 0.89893 0.89458 0.88398 0.89566 0.88932 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.30 18.54 42.15 0.78 -8.52 16 2 C 0.23 4.19 15.43 -20.76 -0.32 3.87 16 3 C -0.07 -1.21 5.05 -29.52 -0.15 -1.36 16 4 C 0.07 1.37 4.93 -3.82 -0.02 1.36 16 5 N -0.52 -10.24 4.68 -237.52 -1.11 -11.35 16 6 C 0.19 4.33 4.53 -4.97 -0.02 4.30 16 7 C -0.51 -13.30 8.39 -34.44 -0.29 -13.59 16 8 H 0.06 1.68 7.38 -52.49 -0.39 1.29 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -25.22 13.29 55.43 0.74 -24.49 16 11 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.13 2.10 5.31 -4.97 -0.03 2.07 16 16 C 0.10 1.63 5.97 -82.49 -0.49 1.14 16 17 C -0.24 -3.50 10.74 -39.97 -0.43 -3.93 16 18 C 0.05 0.61 7.49 -81.94 -0.61 0.00 16 19 N -0.40 -5.54 4.85 -55.73 -0.27 -5.81 16 20 N -0.27 -4.56 11.62 33.64 0.39 -4.17 16 21 C 0.13 1.18 7.77 -2.98 -0.02 1.16 16 22 C -0.13 -0.80 7.19 -25.08 -0.18 -0.98 16 23 C -0.06 -0.50 6.86 -26.59 -0.18 -0.68 16 24 H 0.10 1.53 6.34 -51.93 -0.33 1.20 16 25 H 0.12 2.16 6.28 -51.93 -0.33 1.83 16 26 H 0.09 1.82 6.98 -51.93 -0.36 1.46 16 27 H 0.07 1.27 6.43 -51.93 -0.33 0.94 16 28 H 0.01 0.16 6.01 -51.93 -0.31 -0.16 16 29 H 0.03 0.80 7.91 -51.93 -0.41 0.39 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.05 0.73 6.07 -51.93 -0.32 0.42 16 32 H 0.09 1.47 7.92 -51.93 -0.41 1.06 16 33 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -31.82 325.49 -7.72 -39.53 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.28 Total: -1.03 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.84 Total: -5.15 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.53 Total: -54.34 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.82 -7.72 -39.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593017277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.270 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds