Wall clock time and date at job start Mon Mar 30 2020 01:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47465 * 335.59389 * 3 2 1 5 5 N 1.46899 * 109.46771 * 179.60470 * 4 3 2 6 6 C 1.46893 * 111.00437 * 297.96328 * 5 4 3 7 7 C 1.50710 * 109.47122 * 292.95339 * 6 5 4 8 8 H 1.08002 * 119.99865 * 354.96542 * 7 6 5 9 9 C 1.37868 * 119.99851 * 174.96515 * 7 6 5 10 10 N 1.31520 * 120.00599 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99901 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46674 * 59.99837 * 11 9 7 13 13 H 1.48500 * 109.47228 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47099 * 300.00110 * 11 9 7 15 15 C 1.46901 * 111.00087 * 61.91913 * 5 4 3 16 16 C 1.50705 * 109.46759 * 66.04074 * 15 5 4 17 17 C 1.39788 * 125.89459 * 95.00655 * 16 15 5 18 18 C 1.35533 * 107.89309 * 179.97438 * 17 16 15 19 19 N 1.34714 * 107.88732 * 359.87410 * 18 17 16 20 20 N 1.30704 * 125.89647 * 274.96818 * 16 15 5 21 21 C 1.47140 * 111.01229 * 180.22530 * 19 18 17 22 22 C 1.54368 * 105.64170 * 342.81239 * 21 19 18 23 23 C 1.51428 * 141.97487 * 179.72914 * 18 17 16 24 24 H 1.08999 * 109.46933 * 215.59176 * 3 2 1 25 25 H 1.09000 * 109.47205 * 95.60167 * 3 2 1 26 26 H 1.08996 * 109.46448 * 59.60983 * 4 3 2 27 27 H 1.08995 * 109.46933 * 299.60658 * 4 3 2 28 28 H 1.09002 * 109.47522 * 52.95143 * 6 5 4 29 29 H 1.08999 * 109.47239 * 172.95860 * 6 5 4 30 30 H 0.96995 * 120.00337 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.47035 * 306.04319 * 15 5 4 32 32 H 1.09000 * 109.47240 * 186.03664 * 15 5 4 33 33 H 1.08000 * 126.05036 * 0.03770 * 17 16 15 34 34 H 1.09002 * 110.23227 * 101.87929 * 21 19 18 35 35 H 1.08995 * 110.22825 * 223.74347 * 21 19 18 36 36 H 1.09001 * 110.97431 * 143.88847 * 22 21 19 37 37 H 1.08996 * 110.97405 * 267.65724 * 22 21 19 38 38 H 1.09006 * 110.48023 * 315.33318 * 23 18 17 39 39 H 1.08999 * 110.48157 * 77.96881 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3127 0.5960 5 7 4.5876 -1.3158 0.5873 6 6 5.1061 -1.2350 -0.7847 7 6 4.7618 -2.5005 -1.5273 8 1 4.2849 -3.3186 -1.0079 9 6 5.0555 -2.6137 -2.8695 10 7 5.6366 -1.6177 -3.5020 11 14 4.6292 -4.1825 -3.7898 12 1 3.1638 -4.4132 -3.7224 13 1 5.0446 -4.0520 -5.2096 14 1 5.3399 -5.3291 -3.1691 15 6 5.1214 -0.2272 1.4167 16 6 4.7708 -0.4779 2.8608 17 6 5.5883 -1.1044 3.8059 18 6 4.9158 -1.1370 4.9821 19 7 3.7183 -0.5505 4.7903 20 7 3.6501 -0.1463 3.4460 21 6 2.9292 -0.5437 6.0323 22 6 3.5927 -1.5905 6.9526 23 6 5.0449 -1.6016 6.4175 24 1 2.9709 0.8365 0.5981 25 1 2.9713 0.1011 -1.0228 26 1 2.7500 -2.1488 0.0019 27 1 2.7612 -1.4097 1.6211 28 1 4.6572 -0.3818 -1.2932 29 1 6.1889 -1.1132 -0.7573 30 1 5.8429 -1.6973 -4.4464 31 1 4.6872 0.7199 1.0965 32 1 6.2051 -0.1854 1.3080 33 1 6.5806 -1.4928 3.6300 34 1 2.9647 0.4422 6.4960 35 1 1.8969 -0.8248 5.8245 36 1 3.5618 -1.2699 7.9940 37 1 3.1248 -2.5676 6.8329 38 1 5.4577 -2.6097 6.4564 39 1 5.6669 -0.9114 6.9874 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593017277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:26 Heat of formation + Delta-G solvation = 102.241510 kcal Electronic energy + Delta-G solvation = -20708.178367 eV Core-core repulsion = 17652.316442 eV Total energy + Delta-G solvation = -3055.861925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.54248 -39.40185 -37.52725 -36.85527 -34.64303 -32.28183 -31.57143 -30.82422 -29.01311 -27.79191 -26.43821 -25.24090 -22.61396 -21.86407 -20.96974 -20.08911 -18.79859 -18.18717 -17.51584 -16.86052 -16.70371 -16.33227 -15.84051 -15.45054 -15.22629 -14.81442 -14.62045 -14.34743 -14.05931 -13.94017 -13.62471 -13.53821 -13.44880 -13.05595 -12.93243 -12.80548 -12.63198 -12.55601 -12.39962 -12.36698 -11.94560 -11.85563 -11.55346 -11.42310 -11.21415 -10.50605 -9.94062 -9.33841 -8.93665 -8.11002 -6.17580 0.98289 1.47013 1.47204 1.52994 1.54953 1.69896 1.74268 1.84671 2.47400 2.98968 3.23031 3.25384 3.54502 3.69144 3.84720 3.98410 4.11239 4.15550 4.25256 4.35735 4.46681 4.54450 4.63809 4.67627 4.82962 4.88828 4.93526 5.00143 5.07059 5.14679 5.18845 5.31242 5.39540 5.41940 5.74565 5.83427 6.07514 6.15321 6.32089 6.53075 6.65844 6.94441 6.97355 7.50839 8.98363 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.004630 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.760069 B = 6045.623494 C = 6806.823171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.246 3.754 3 C -0.057 4.057 4 C 0.083 3.917 5 N -0.527 5.527 6 C 0.200 3.800 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.951 3.049 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.129 3.871 16 C 0.085 3.915 17 C -0.269 4.269 18 C 0.055 3.945 19 N -0.405 5.405 20 N -0.309 5.309 21 C 0.116 3.884 22 C -0.117 4.117 23 C -0.062 4.062 24 H 0.121 0.879 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.070 0.930 28 H -0.001 1.001 29 H 0.016 0.984 30 H 0.263 0.737 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.149 0.851 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 2.164 22.115 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.071 4.071 3 C -0.099 4.099 4 C -0.047 4.047 5 N -0.250 5.250 6 C 0.075 3.925 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.185 4.185 10 N -0.567 5.567 11 Si 0.777 3.223 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.196 1.196 15 C 0.000 4.000 16 C -0.081 4.081 17 C -0.298 4.298 18 C -0.074 4.074 19 N -0.188 5.188 20 N -0.131 5.131 21 C -0.003 4.003 22 C -0.155 4.155 23 C -0.101 4.101 24 H 0.139 0.861 25 H 0.130 0.870 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.017 0.983 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.167 0.833 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.383 2.414 22.025 22.285 hybrid contribution 0.782 -0.270 -1.460 1.678 sum -1.601 2.143 20.565 20.739 Atomic orbital electron populations 1.81110 1.13990 1.10768 1.11258 1.29337 0.95257 0.91388 0.91092 1.20091 0.80782 1.03285 1.05746 1.21852 0.88350 0.94498 1.00012 1.62195 1.05853 1.43733 1.13226 1.19563 0.94551 0.95735 0.82670 1.21381 1.38795 1.01451 0.93927 0.92544 1.25618 0.95367 0.99119 0.98442 1.70021 1.43329 1.32882 1.10502 0.85718 0.78524 0.80573 0.77483 1.20144 1.21082 1.19635 1.20506 1.01022 0.93324 0.85185 1.22228 0.91626 0.97762 0.96438 1.20760 1.03890 1.13604 0.91564 1.22865 0.88593 0.97798 0.98179 1.50457 1.15553 1.45411 1.07400 1.77219 1.22242 1.25809 0.87849 1.22700 0.96020 1.02756 0.78870 1.22890 0.93225 0.98918 1.00493 1.21101 0.98801 1.04111 0.86063 0.86116 0.86969 0.91475 0.91173 0.98316 0.96630 0.92839 0.92673 0.88389 0.83329 0.88141 0.89481 0.84599 0.89345 0.87584 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -19.47 18.54 20.01 0.37 -19.10 16 2 C 0.25 8.89 15.43 89.44 1.38 10.27 16 3 C -0.06 -1.94 5.05 28.79 0.15 -1.79 16 4 C 0.08 3.15 4.93 86.30 0.43 3.57 16 5 N -0.53 -21.02 4.68 -905.36 -4.24 -25.26 16 6 C 0.20 9.48 4.53 85.56 0.39 9.87 16 7 C -0.52 -27.44 8.39 25.60 0.21 -27.23 16 8 H 0.06 3.02 7.38 -2.91 -0.02 3.00 16 9 C 0.01 0.71 5.46 84.65 0.46 1.18 16 10 N -0.93 -52.60 13.29 21.44 0.28 -52.31 16 11 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 C 0.13 4.34 5.31 85.56 0.45 4.79 16 16 C 0.08 2.78 5.97 43.10 0.26 3.04 16 17 C -0.27 -7.87 10.74 22.02 0.24 -7.63 16 18 C 0.05 1.32 7.49 41.72 0.31 1.63 16 19 N -0.41 -10.65 4.85 -330.22 -1.60 -12.25 16 20 N -0.31 -10.22 11.62 -47.49 -0.55 -10.78 16 21 C 0.12 1.77 7.77 86.72 0.67 2.44 16 22 C -0.12 -0.94 7.19 31.66 0.23 -0.71 16 23 C -0.06 -0.74 6.86 30.68 0.21 -0.53 16 24 H 0.12 3.62 6.34 -2.39 -0.02 3.60 16 25 H 0.11 4.07 6.28 -2.39 -0.01 4.05 16 26 H 0.07 2.81 6.98 -2.39 -0.02 2.79 16 27 H 0.07 2.64 6.43 -2.39 -0.02 2.63 16 28 H 0.00 -0.04 6.01 -2.39 -0.01 -0.05 16 29 H 0.02 0.79 7.91 -2.39 -0.02 0.77 16 30 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.06 1.74 6.07 -2.39 -0.01 1.72 16 32 H 0.10 3.14 7.92 -2.39 -0.02 3.12 16 33 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -69.00 325.49 2.74 -66.26 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.06 Total: 9.10 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 5.39 Total: -1.10 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -5.74 Total: -119.70 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -69.00 2.74 -66.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593017277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.504 kcal (2) G-P(sol) polarization free energy of solvation -68.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds