Wall clock time and date at job start Mon Mar 30 2020 01:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47195 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47208 * 179.97438 * 225.94406 * 3 2 1 5 5 N 1.46903 * 109.47065 * 150.40702 * 4 3 2 6 6 C 1.46896 * 110.99769 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47070 * 179.97438 * 6 5 4 8 8 C 1.35351 * 126.75206 * 94.99835 * 7 6 5 9 9 N 1.35307 * 106.17484 * 180.02562 * 8 7 6 10 10 C 1.46503 * 125.86823 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47570 * 123.57206 * 10 9 8 12 12 C 1.50696 * 115.54936 * 279.11620 * 11 10 9 13 13 H 1.08001 * 119.99983 * 144.78109 * 12 11 10 14 14 C 1.37873 * 120.00101 * 324.78980 * 12 11 10 15 15 N 1.31513 * 120.00034 * 341.00722 * 14 12 11 16 16 Si 1.86804 * 120.00289 * 161.01429 * 14 12 11 17 17 H 1.48503 * 109.47171 * 89.99676 * 16 14 12 18 18 H 1.48501 * 109.47133 * 209.99504 * 16 14 12 19 19 H 1.48496 * 109.46802 * 329.99929 * 16 14 12 20 20 C 1.52999 * 117.49962 * 133.40482 * 11 10 9 21 21 C 1.52998 * 60.00022 * 252.51224 * 20 11 10 22 22 N 1.28718 * 108.26723 * 0.02562 * 9 8 7 23 23 N 1.28640 * 110.17638 * 359.71660 * 22 9 8 24 24 H 1.09004 * 109.47262 * 163.65337 * 1 2 3 25 25 H 1.08998 * 109.47302 * 283.64873 * 1 2 3 26 26 H 1.09001 * 109.47501 * 43.64736 * 1 2 3 27 27 H 1.08998 * 109.47443 * 30.40659 * 4 3 2 28 28 H 1.09003 * 109.46933 * 270.40433 * 4 3 2 29 29 H 1.00900 * 110.99825 * 303.95709 * 5 4 3 30 30 H 1.08993 * 109.47672 * 300.00189 * 6 5 4 31 31 H 1.08998 * 109.46936 * 60.00687 * 6 5 4 32 32 H 1.07998 * 126.91228 * 359.97359 * 8 7 6 33 33 H 1.09008 * 109.46916 * 243.57158 * 10 9 8 34 34 H 1.08998 * 109.47039 * 3.56540 * 10 9 8 35 35 H 0.97001 * 120.00216 * 185.01889 * 15 14 12 36 36 H 1.09001 * 117.50018 * 0.02562 * 20 11 10 37 37 H 1.09002 * 117.49566 * 145.01895 * 20 11 10 38 38 H 1.09003 * 117.49981 * 252.51009 * 21 20 11 39 39 H 1.09007 * 117.49530 * 107.49351 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0016 0.0005 5 7 4.6070 1.2064 -0.6833 6 6 6.0754 1.2418 -0.7017 7 6 6.5389 2.4885 -1.4101 8 6 6.8768 3.6674 -0.8373 9 7 7.2270 4.4924 -1.8509 10 6 7.6691 5.8823 -1.7128 11 6 9.0431 6.0477 -2.3653 12 6 10.2167 5.6057 -1.5298 13 1 11.0745 5.1499 -2.0019 14 6 10.1955 5.7831 -0.1627 15 7 9.3623 6.6467 0.3755 16 14 11.3504 4.7971 0.9253 17 1 12.6238 5.5413 1.0980 18 1 10.7184 4.5828 2.2519 19 1 11.6270 3.4834 0.2907 20 6 9.2461 7.2500 -3.2895 21 6 9.1359 5.8423 -3.8785 22 7 7.1050 3.8463 -2.9575 23 7 6.7017 2.6464 -2.7285 24 1 -0.3634 -0.9862 -0.2892 25 1 -0.3634 0.2425 0.9986 26 1 -0.3634 0.7436 -0.7093 27 1 4.4822 -0.8844 -0.5195 28 1 4.4810 -0.0053 1.0283 29 1 4.2316 1.2691 -1.6178 30 1 6.4516 1.2436 0.3213 31 1 6.4534 0.3644 -1.2264 32 1 6.8678 3.9025 0.2168 33 1 6.9525 6.5418 -2.2026 34 1 7.7355 6.1390 -0.6556 35 1 9.3970 6.8250 1.3283 36 1 8.4009 7.9233 -3.4325 37 1 10.2288 7.7216 -3.2932 38 1 10.0460 5.3877 -4.2699 39 1 8.2180 5.5893 -4.4094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594651348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:17 Heat of formation + Delta-G solvation = 170.196204 kcal Electronic energy + Delta-G solvation = -20193.577247 eV Core-core repulsion = 17140.662059 eV Total energy + Delta-G solvation = -3052.915189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.43782 -37.10718 -36.62767 -34.06125 -32.92507 -32.44137 -31.11957 -29.00176 -27.03214 -26.13166 -25.62528 -23.71591 -21.53778 -21.15815 -20.67990 -19.25422 -17.33472 -16.57452 -15.93284 -15.63423 -15.47965 -14.89727 -14.66104 -14.45840 -14.07198 -13.82870 -13.69203 -13.59731 -13.11101 -12.88848 -12.47535 -12.32732 -11.93526 -11.67587 -11.14298 -11.00893 -10.84388 -10.58629 -10.33718 -10.21194 -10.08136 -9.94564 -9.87660 -9.41938 -9.03363 -8.87979 -8.61098 -8.38496 -8.28906 -6.35231 -4.31260 2.39158 2.56099 2.63418 3.12203 3.15679 3.21589 3.28830 3.34510 4.08503 4.18654 4.54605 4.74218 4.93476 5.17323 5.24058 5.31079 5.36909 5.41255 5.43339 5.49255 5.59078 5.68776 5.74619 5.81012 5.86979 6.09604 6.26946 6.30604 6.49610 6.68724 6.72182 6.77665 6.90894 6.98813 7.16485 7.26685 7.30074 7.54467 7.56115 7.69463 8.15993 8.62315 9.25837 9.31335 10.68387 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.003970 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.926405 B = 7050.892815 C = 7754.826886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.187 4.187 3 C -0.180 4.180 4 C 0.172 3.828 5 N -0.683 5.683 6 C 0.156 3.844 7 C -0.049 4.049 8 C -0.018 4.018 9 N -0.250 5.250 10 C 0.129 3.871 11 C 0.030 3.970 12 C -0.484 4.484 13 H 0.064 0.936 14 C 0.069 3.931 15 N -0.883 5.883 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.281 1.281 19 H -0.271 1.271 20 C -0.191 4.191 21 C -0.189 4.189 22 N -0.082 5.082 23 N -0.290 5.290 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.350 0.650 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.179 0.821 33 H 0.066 0.934 34 H 0.154 0.846 35 H 0.268 0.732 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.223 -8.808 2.204 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.189 4.189 3 C -0.180 4.180 4 C 0.044 3.956 5 N -0.315 5.315 6 C 0.026 3.974 7 C -0.189 4.189 8 C -0.172 4.172 9 N -0.041 5.041 10 C 0.009 3.991 11 C 0.028 3.972 12 C -0.521 4.521 13 H 0.083 0.917 14 C -0.133 4.133 15 N -0.521 5.521 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.196 1.196 20 C -0.230 4.230 21 C -0.227 4.227 22 N -0.062 5.062 23 N -0.157 5.157 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.168 0.832 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.196 0.804 33 H 0.084 0.916 34 H 0.171 0.829 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.184 -8.274 1.421 13.985 hybrid contribution 0.863 -0.822 1.156 1.661 sum -10.321 -9.096 2.577 13.997 Atomic orbital electron populations 1.18839 0.84751 1.02852 1.03023 1.22391 0.93904 1.01061 1.01503 1.22173 0.93417 1.01149 1.01285 1.18794 0.84195 0.91973 1.00635 1.60492 1.08097 1.38156 1.24776 1.19927 0.86207 0.92145 0.99170 1.21428 1.09451 0.96563 0.91424 1.23230 1.05949 0.91271 0.96736 1.47598 1.38943 1.13606 1.03985 1.22437 0.95027 0.72917 1.08675 1.19035 0.92358 0.97993 0.87775 1.20549 1.01466 1.39210 0.90855 0.91749 1.24958 0.95914 0.94443 0.97971 1.69646 1.37979 1.31436 1.13047 0.86578 0.80769 0.81171 0.79730 1.20367 1.20610 1.19567 1.23038 1.00898 0.90872 1.08167 1.22888 1.01409 0.99709 0.98679 1.78147 1.17873 0.99902 1.10257 1.74911 1.16461 1.09574 1.14708 0.90430 0.90299 0.90110 0.92799 0.88638 0.83192 0.89384 0.93432 0.80379 0.91622 0.82887 0.92153 0.91407 0.89925 0.90578 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.29 10.32 34.37 0.35 0.07 16 2 C -0.19 -2.17 14.13 -37.13 -0.52 -2.69 16 3 C -0.18 -2.23 13.60 -37.12 -0.50 -2.74 16 4 C 0.17 1.89 6.16 -6.61 -0.04 1.85 16 5 N -0.68 -9.08 6.46 -118.17 -0.76 -9.85 16 6 C 0.16 2.17 6.25 -4.98 -0.03 2.14 16 7 C -0.05 -0.90 6.76 -82.77 -0.56 -1.46 16 8 C -0.02 -0.35 11.50 -17.05 -0.20 -0.54 16 9 N -0.25 -5.37 3.43 -61.26 -0.21 -5.58 16 10 C 0.13 2.83 6.14 -4.04 -0.02 2.80 16 11 C 0.03 0.70 1.93 -155.67 -0.30 0.40 16 12 C -0.48 -12.57 9.00 -34.44 -0.31 -12.88 16 13 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 14 C 0.07 1.74 5.10 -17.82 -0.09 1.65 16 15 N -0.88 -22.12 10.93 55.43 0.61 -21.52 16 16 Si 0.89 19.83 29.58 -169.99 -5.03 14.80 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.19 -4.13 9.88 -26.73 -0.26 -4.40 16 21 C -0.19 -4.15 9.16 -26.73 -0.24 -4.40 16 22 N -0.08 -1.83 11.58 60.35 0.70 -1.13 16 23 N -0.29 -6.09 12.41 33.29 0.41 -5.67 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.35 4.89 8.70 -39.29 -0.34 4.55 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.18 3.05 8.06 -52.49 -0.42 2.63 16 33 H 0.07 1.34 7.94 -51.92 -0.41 0.93 16 34 H 0.15 3.53 5.17 -51.93 -0.27 3.27 16 35 H 0.27 6.39 8.32 -40.82 -0.34 6.05 16 36 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 37 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 39 H 0.08 1.77 7.47 -51.93 -0.39 1.38 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -28.46 340.55 -7.50 -35.96 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.61 Total: 8.06 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -2.74 Total: -20.20 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.74 Total: -43.75 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.46 -7.50 -35.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594651348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.155 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds