Wall clock time and date at job start Mon Mar 30 2020 01:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47195 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47208 * 179.97438 * 225.94406 * 3 2 1 5 5 N 1.46903 * 109.47065 * 150.40702 * 4 3 2 6 6 C 1.46896 * 110.99769 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47070 * 179.97438 * 6 5 4 8 8 C 1.35351 * 126.75206 * 94.99835 * 7 6 5 9 9 N 1.35307 * 106.17484 * 180.02562 * 8 7 6 10 10 C 1.46503 * 125.86823 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47570 * 123.57206 * 10 9 8 12 12 C 1.50696 * 115.54936 * 279.11620 * 11 10 9 13 13 H 1.08001 * 119.99983 * 144.78109 * 12 11 10 14 14 C 1.37873 * 120.00101 * 324.78980 * 12 11 10 15 15 N 1.31513 * 120.00034 * 341.00722 * 14 12 11 16 16 Si 1.86804 * 120.00289 * 161.01429 * 14 12 11 17 17 H 1.48503 * 109.47171 * 89.99676 * 16 14 12 18 18 H 1.48501 * 109.47133 * 209.99504 * 16 14 12 19 19 H 1.48496 * 109.46802 * 329.99929 * 16 14 12 20 20 C 1.52999 * 117.49962 * 133.40482 * 11 10 9 21 21 C 1.52998 * 60.00022 * 252.51224 * 20 11 10 22 22 N 1.28718 * 108.26723 * 0.02562 * 9 8 7 23 23 N 1.28640 * 110.17638 * 359.71660 * 22 9 8 24 24 H 1.09004 * 109.47262 * 163.65337 * 1 2 3 25 25 H 1.08998 * 109.47302 * 283.64873 * 1 2 3 26 26 H 1.09001 * 109.47501 * 43.64736 * 1 2 3 27 27 H 1.08998 * 109.47443 * 30.40659 * 4 3 2 28 28 H 1.09003 * 109.46933 * 270.40433 * 4 3 2 29 29 H 1.00900 * 110.99825 * 303.95709 * 5 4 3 30 30 H 1.08993 * 109.47672 * 300.00189 * 6 5 4 31 31 H 1.08998 * 109.46936 * 60.00687 * 6 5 4 32 32 H 1.07998 * 126.91228 * 359.97359 * 8 7 6 33 33 H 1.09008 * 109.46916 * 243.57158 * 10 9 8 34 34 H 1.08998 * 109.47039 * 3.56540 * 10 9 8 35 35 H 0.97001 * 120.00216 * 185.01889 * 15 14 12 36 36 H 1.09001 * 117.50018 * 0.02562 * 20 11 10 37 37 H 1.09002 * 117.49566 * 145.01895 * 20 11 10 38 38 H 1.09003 * 117.49981 * 252.51009 * 21 20 11 39 39 H 1.09007 * 117.49530 * 107.49351 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0016 0.0005 5 7 4.6070 1.2064 -0.6833 6 6 6.0754 1.2418 -0.7017 7 6 6.5389 2.4885 -1.4101 8 6 6.8768 3.6674 -0.8373 9 7 7.2270 4.4924 -1.8509 10 6 7.6691 5.8823 -1.7128 11 6 9.0431 6.0477 -2.3653 12 6 10.2167 5.6057 -1.5298 13 1 11.0745 5.1499 -2.0019 14 6 10.1955 5.7831 -0.1627 15 7 9.3623 6.6467 0.3755 16 14 11.3504 4.7971 0.9253 17 1 12.6238 5.5413 1.0980 18 1 10.7184 4.5828 2.2519 19 1 11.6270 3.4834 0.2907 20 6 9.2461 7.2500 -3.2895 21 6 9.1359 5.8423 -3.8785 22 7 7.1050 3.8463 -2.9575 23 7 6.7017 2.6464 -2.7285 24 1 -0.3634 -0.9862 -0.2892 25 1 -0.3634 0.2425 0.9986 26 1 -0.3634 0.7436 -0.7093 27 1 4.4822 -0.8844 -0.5195 28 1 4.4810 -0.0053 1.0283 29 1 4.2316 1.2691 -1.6178 30 1 6.4516 1.2436 0.3213 31 1 6.4534 0.3644 -1.2264 32 1 6.8678 3.9025 0.2168 33 1 6.9525 6.5418 -2.2026 34 1 7.7355 6.1390 -0.6556 35 1 9.3970 6.8250 1.3283 36 1 8.4009 7.9233 -3.4325 37 1 10.2288 7.7216 -3.2932 38 1 10.0460 5.3877 -4.2699 39 1 8.2180 5.5893 -4.4094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594651348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:11 Heat of formation + Delta-G solvation = 153.709586 kcal Electronic energy + Delta-G solvation = -20194.292161 eV Core-core repulsion = 17140.662059 eV Total energy + Delta-G solvation = -3053.630102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -44.00472 -38.78801 -37.70238 -35.06419 -34.41078 -34.30855 -32.39456 -29.94732 -28.66413 -27.59875 -27.12050 -24.73483 -23.18114 -22.86512 -22.16974 -21.00226 -18.66465 -18.03602 -17.45267 -17.08061 -16.68542 -16.53933 -15.84798 -15.78446 -15.48949 -15.11960 -14.82319 -14.37618 -14.29789 -14.03837 -13.76027 -13.51439 -13.40229 -13.30106 -12.94540 -12.73449 -12.47603 -12.35464 -12.05800 -11.82406 -11.64499 -11.24114 -10.94186 -10.78654 -10.70535 -10.60159 -10.16814 -10.02966 -9.43335 -8.25076 -6.27158 0.89565 1.35270 1.41804 1.46503 1.51039 1.74872 1.78024 1.81746 2.35037 2.85790 3.25570 3.49336 3.60518 3.68814 3.89445 4.11415 4.17899 4.22029 4.47768 4.49719 4.53723 4.57821 4.60195 4.70216 4.79569 4.83586 4.86681 4.90301 4.95205 5.07388 5.09748 5.22408 5.31222 5.41284 5.52120 5.77295 5.92286 5.93289 6.23858 6.27855 6.65306 6.71734 7.31351 7.72968 8.77597 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.003970 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.926405 B = 7050.892815 C = 7754.826886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.193 4.193 3 C -0.218 4.218 4 C 0.174 3.826 5 N -0.691 5.691 6 C 0.160 3.840 7 C -0.040 4.040 8 C -0.030 4.030 9 N -0.258 5.258 10 C 0.137 3.863 11 C 0.008 3.992 12 C -0.513 4.513 13 H 0.043 0.957 14 C 0.043 3.957 15 N -0.892 5.892 16 Si 0.940 3.060 17 H -0.277 1.277 18 H -0.267 1.267 19 H -0.282 1.282 20 C -0.181 4.181 21 C -0.181 4.181 22 N -0.111 5.111 23 N -0.307 5.307 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.343 0.657 30 H 0.109 0.891 31 H 0.057 0.943 32 H 0.198 0.802 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.273 0.727 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.232 -9.570 3.382 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.194 4.194 3 C -0.218 4.218 4 C 0.047 3.953 5 N -0.322 5.322 6 C 0.030 3.970 7 C -0.180 4.180 8 C -0.184 4.184 9 N -0.049 5.049 10 C 0.017 3.983 11 C 0.007 3.993 12 C -0.550 4.550 13 H 0.061 0.939 14 C -0.159 4.159 15 N -0.529 5.529 16 Si 0.766 3.234 17 H -0.203 1.203 18 H -0.192 1.192 19 H -0.207 1.207 20 C -0.220 4.220 21 C -0.219 4.219 22 N -0.090 5.090 23 N -0.172 5.172 24 H 0.114 0.886 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.160 0.840 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.215 0.785 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.203 -9.035 2.596 15.404 hybrid contribution 1.124 -0.616 0.797 1.509 sum -11.079 -9.651 3.393 15.079 Atomic orbital electron populations 1.19089 0.82368 1.04236 1.04212 1.23395 0.95289 1.00058 1.00651 1.22667 0.94344 1.02397 1.02438 1.18867 0.83720 0.91465 1.01230 1.60468 1.07478 1.39801 1.24471 1.20037 0.86783 0.90312 0.99877 1.22080 1.07761 0.97685 0.90498 1.23721 1.05859 0.91388 0.97398 1.47590 1.39290 1.13601 1.04442 1.22235 0.94512 0.73672 1.07877 1.19117 0.92573 0.99379 0.88244 1.20640 1.01962 1.40435 0.91931 0.93857 1.25414 0.97179 0.94807 0.98472 1.69697 1.38340 1.31412 1.13487 0.85825 0.79451 0.79374 0.78757 1.20286 1.19175 1.20713 1.23049 1.01410 0.90778 1.06726 1.22795 1.01188 0.99995 0.97884 1.78114 1.19358 1.00619 1.10913 1.74875 1.16830 1.09264 1.16278 0.88621 0.88855 0.89241 0.91341 0.87268 0.83979 0.87257 0.92482 0.78495 0.90417 0.83849 0.91663 0.89358 0.90468 0.91391 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.56 10.32 70.18 0.72 0.17 16 2 C -0.19 -4.20 14.13 31.12 0.44 -3.76 16 3 C -0.22 -5.15 13.60 31.13 0.42 -4.73 16 4 C 0.17 3.53 6.16 84.50 0.52 4.06 16 5 N -0.69 -17.31 6.46 -527.78 -3.41 -20.72 16 6 C 0.16 4.14 6.25 85.56 0.53 4.68 16 7 C -0.04 -1.43 6.76 41.60 0.28 -1.15 16 8 C -0.03 -1.13 11.50 83.49 0.96 -0.17 16 9 N -0.26 -10.97 3.43 -347.73 -1.19 -12.16 16 10 C 0.14 5.94 6.14 86.38 0.53 6.47 16 11 C 0.01 0.38 1.93 -52.93 -0.10 0.28 16 12 C -0.51 -26.83 9.00 25.60 0.23 -26.60 16 13 H 0.04 2.38 7.89 -2.91 -0.02 2.35 16 14 C 0.04 2.13 5.10 84.65 0.43 2.56 16 15 N -0.89 -43.88 10.93 21.45 0.23 -43.64 16 16 Si 0.94 40.17 29.58 68.60 2.03 42.20 16 17 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 C -0.18 -7.73 9.88 30.59 0.30 -7.43 16 21 C -0.18 -7.95 9.16 30.59 0.28 -7.67 16 22 N -0.11 -4.94 11.58 37.02 0.43 -4.51 16 23 N -0.31 -12.75 12.41 -48.60 -0.60 -13.35 16 24 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.34 9.30 8.70 -89.69 -0.78 8.52 16 30 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.20 6.44 8.06 -2.91 -0.02 6.42 16 33 H 0.08 3.11 7.94 -2.38 -0.02 3.09 16 34 H 0.14 6.55 5.17 -2.39 -0.01 6.54 16 35 H 0.27 12.66 8.32 -92.71 -0.77 11.89 16 36 H 0.09 3.37 8.08 -2.39 -0.02 3.35 16 37 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.09 3.72 7.47 -2.38 -0.02 3.71 16 Total: -1.00 -59.95 340.55 3.32 -56.62 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.28 Total: 28.85 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 5.56 Total: -33.29 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -4.54 Total: -94.38 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -59.95 3.32 -56.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594651348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.334 kcal (2) G-P(sol) polarization free energy of solvation -59.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds