Wall clock time and date at job start Mon Mar 30 2020 03:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86812 * 119.99622 * 2 1 4 4 H 1.48504 * 109.46398 * 269.99457 * 3 2 1 5 5 H 1.48497 * 109.47048 * 29.99266 * 3 2 1 6 6 H 1.48496 * 109.46972 * 149.99477 * 3 2 1 7 7 C 1.37877 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99852 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99867 * 179.72943 * 7 2 1 10 10 N 1.46901 * 109.46972 * 174.98547 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.72926 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 N 1.46910 * 109.56990 * 177.59037 * 13 12 11 15 15 C 1.46897 * 111.00111 * 85.28510 * 14 13 12 16 16 C 1.50699 * 109.47230 * 179.97438 * 15 14 13 17 17 C 1.38230 * 120.00221 * 269.72998 * 16 15 14 18 18 C 1.38232 * 120.00089 * 179.76544 * 17 16 15 19 19 C 1.38234 * 119.99727 * 0.50243 * 18 17 16 20 20 C 1.38233 * 120.00077 * 359.75110 * 19 18 17 21 21 C 1.38231 * 119.99998 * 359.97438 * 20 19 18 22 22 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 23 23 C 1.46846 * 111.00467 * 64.94028 * 10 9 7 24 24 H 0.97003 * 120.00586 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46959 * 294.98231 * 9 7 2 26 26 H 1.08998 * 109.47508 * 54.98775 * 9 7 2 27 27 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 28 28 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 29 29 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 30 30 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 31 31 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 32 32 H 1.00901 * 110.99260 * 209.23768 * 14 13 12 33 33 H 1.09006 * 109.46720 * 299.99778 * 15 14 13 34 34 H 1.09002 * 109.47369 * 59.99427 * 15 14 13 35 35 H 1.08006 * 119.99762 * 359.97438 * 17 16 15 36 36 H 1.08000 * 120.00493 * 180.22518 * 18 17 16 37 37 H 1.08003 * 119.99987 * 179.72462 * 19 18 17 38 38 H 1.08009 * 119.99793 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.99729 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.50148 * 182.40235 * 22 13 12 41 41 H 1.08994 * 109.53641 * 62.30127 * 22 13 12 42 42 H 1.09006 * 109.45826 * 294.17926 * 23 10 9 43 43 H 1.09003 * 109.46067 * 54.15415 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4463 2.6528 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5115 -1.1938 -0.0056 10 7 4.0018 -2.5731 0.1173 11 6 3.5219 -3.1935 1.3587 12 6 4.1669 -4.5714 1.5246 13 6 3.8054 -5.4469 0.3215 14 7 4.4683 -6.7520 0.4456 15 6 3.6696 -7.6723 1.2660 16 6 4.3795 -8.9975 1.3701 17 6 4.1322 -9.9890 0.4392 18 6 4.7870 -11.2029 0.5318 19 6 5.6814 -11.4289 1.5614 20 6 5.9247 -10.4392 2.4953 21 6 5.2742 -9.2234 2.3994 22 6 4.2732 -4.7553 -0.9620 23 6 3.6251 -3.3722 -1.0557 24 1 -0.4851 0.8400 -0.0004 25 1 3.8710 -0.7624 -0.9399 26 1 3.8783 -0.6018 0.8329 27 1 3.7891 -2.5630 2.2067 28 1 2.4383 -3.3027 1.3148 29 1 3.7985 -5.0381 2.4381 30 1 5.2498 -4.4616 1.5824 31 1 2.7253 -5.5889 0.2858 32 1 4.6580 -7.1489 -0.4624 33 1 3.5391 -7.2504 2.2626 34 1 2.6939 -7.8185 0.8027 35 1 3.4299 -9.8141 -0.3625 36 1 4.5966 -11.9763 -0.1975 37 1 6.1896 -12.3789 1.6364 38 1 6.6232 -10.6160 3.3000 39 1 5.4640 -8.4503 3.1293 40 1 3.9807 -5.3535 -1.8250 41 1 5.3578 -4.6485 -0.9440 42 1 2.5409 -3.4805 -1.0883 43 1 3.9674 -2.8714 -1.9614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595512399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:07 Heat of formation + Delta-G solvation = 21.969244 kcal Electronic energy + Delta-G solvation = -20647.957640 eV Core-core repulsion = 17692.155191 eV Total energy + Delta-G solvation = -2955.802449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.52269 -38.55003 -35.82460 -33.09639 -31.97876 -31.04501 -30.27420 -30.01682 -26.99704 -25.13982 -22.89955 -22.68527 -22.48435 -21.14458 -20.72956 -19.09116 -17.04114 -16.76944 -15.90122 -15.44108 -15.16998 -14.79208 -14.67413 -14.22131 -14.07286 -13.73793 -13.54933 -13.08662 -12.85995 -12.73254 -12.54069 -12.29866 -12.12684 -11.80651 -11.28517 -11.23419 -11.08819 -10.95178 -10.78975 -10.52169 -10.33056 -10.04395 -9.88905 -9.79788 -9.48212 -9.07829 -8.92794 -8.60732 -8.34311 -7.17156 -6.11581 -4.11417 1.17597 1.25295 3.27414 3.34994 3.39046 3.58630 4.32114 4.38996 4.66888 4.71232 4.84133 4.95232 4.95707 5.13719 5.20735 5.23064 5.32923 5.35472 5.52721 5.56914 5.63679 5.83064 5.87010 5.89766 6.06503 6.07884 6.13067 6.26902 6.30530 6.34565 6.41319 6.47855 6.50738 6.60851 6.76789 6.83669 6.89398 6.98325 7.08490 7.17156 7.43552 7.56919 8.07869 8.15417 8.44157 8.90549 9.51539 11.01386 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.046004 B = 0.003007 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.492970 B = 9310.049558 C = 9364.556119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.152 3.848 10 N -0.534 5.534 11 C 0.063 3.937 12 C -0.100 4.100 13 C 0.088 3.912 14 N -0.679 5.679 15 C 0.096 3.904 16 C -0.077 4.077 17 C -0.116 4.116 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.097 4.097 22 C -0.115 4.115 23 C 0.064 3.936 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.031 0.969 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.338 0.662 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.077 -19.845 2.172 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.589 4.589 8 H 0.092 0.908 9 C 0.025 3.975 10 N -0.257 5.257 11 C -0.066 4.066 12 C -0.139 4.139 13 C -0.021 4.021 14 N -0.310 5.310 15 C -0.033 4.033 16 C -0.077 4.077 17 C -0.134 4.134 18 C -0.141 4.141 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.116 4.116 22 C -0.153 4.153 23 C -0.065 4.065 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.156 0.844 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.824 -19.496 2.719 22.464 hybrid contribution -1.404 0.662 -0.705 1.705 sum 9.420 -18.834 2.014 21.154 Atomic orbital electron populations 1.69927 1.06389 1.27005 1.50569 1.24982 0.94698 0.99268 0.94182 0.86795 0.80468 0.83506 0.78649 1.20208 1.21326 1.18696 1.21704 0.90772 0.94611 1.51782 0.90840 1.20203 0.94516 0.85956 0.96844 1.62375 1.58672 1.03527 1.01154 1.21878 0.97996 0.93506 0.93252 1.21594 1.01671 0.94537 0.96076 1.21619 0.95748 0.88143 0.96607 1.60593 1.47573 1.03060 1.19767 1.20946 0.93548 0.89262 0.99558 1.19868 0.97439 0.95136 0.95307 1.21081 1.00051 0.93561 0.98745 1.21101 0.97244 0.97211 0.98501 1.21135 0.98659 0.99189 0.95301 1.21167 0.99943 0.93765 0.99210 1.21078 0.95648 0.96848 0.98025 1.21778 1.01793 0.96401 0.95357 1.21832 0.98306 0.92017 0.94335 0.92696 0.95852 0.95075 0.91586 0.93959 0.92801 0.91115 0.94108 0.84396 0.90052 0.94483 0.86367 0.86276 0.86363 0.86178 0.85852 0.92712 0.90839 0.94125 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.40 27.57 -169.99 -4.69 16.72 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.16 6.40 56.52 0.36 -5.80 16 7 C -0.55 -15.27 8.27 -34.44 -0.28 -15.55 16 8 H 0.07 2.22 6.11 -52.49 -0.32 1.90 16 9 C 0.15 3.66 4.22 -4.98 -0.02 3.63 16 10 N -0.53 -11.15 4.86 -236.11 -1.15 -12.29 16 11 C 0.06 1.22 5.03 -3.83 -0.02 1.20 16 12 C -0.10 -1.59 5.59 -26.65 -0.15 -1.74 16 13 C 0.09 1.28 2.56 -67.59 -0.17 1.11 16 14 N -0.68 -8.45 6.30 -107.86 -0.68 -9.13 16 15 C 0.10 1.09 5.61 -4.98 -0.03 1.06 16 16 C -0.08 -0.83 5.39 -104.63 -0.56 -1.39 16 17 C -0.12 -1.14 9.70 -39.59 -0.38 -1.52 16 18 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 19 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 20 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 21 C -0.10 -1.00 9.70 -39.59 -0.38 -1.39 16 22 C -0.11 -1.74 5.36 -26.65 -0.14 -1.88 16 23 C 0.06 1.22 5.12 -3.84 -0.02 1.20 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.02 0.56 7.77 -51.93 -0.40 0.16 16 26 H 0.03 0.77 6.83 -51.93 -0.35 0.41 16 27 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 28 H 0.04 0.93 6.73 -51.93 -0.35 0.58 16 29 H 0.05 0.79 7.54 -51.93 -0.39 0.39 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.64 7.80 -51.93 -0.41 0.24 16 32 H 0.34 3.92 8.35 -39.29 -0.33 3.59 16 33 H 0.08 0.95 7.46 -51.93 -0.39 0.56 16 34 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16 35 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 38 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 39 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.04 0.87 6.86 -51.93 -0.36 0.51 16 43 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -29.96 338.14 -11.22 -41.18 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.11 Total: 2.88 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -3.46 Total: -17.80 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -1.05 Total: -48.07 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.69 Total: 16.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.96 -11.22 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595512399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.146 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds