Wall clock time and date at job start Mon Mar 30 2020 03:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86812 * 119.99622 * 2 1 4 4 H 1.48504 * 109.46398 * 269.99457 * 3 2 1 5 5 H 1.48497 * 109.47048 * 29.99266 * 3 2 1 6 6 H 1.48496 * 109.46972 * 149.99477 * 3 2 1 7 7 C 1.37877 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99852 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99867 * 179.72943 * 7 2 1 10 10 N 1.46901 * 109.46972 * 174.98547 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.72926 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 N 1.46910 * 109.56990 * 177.59037 * 13 12 11 15 15 C 1.46897 * 111.00111 * 85.28510 * 14 13 12 16 16 C 1.50699 * 109.47230 * 179.97438 * 15 14 13 17 17 C 1.38230 * 120.00221 * 269.72998 * 16 15 14 18 18 C 1.38232 * 120.00089 * 179.76544 * 17 16 15 19 19 C 1.38234 * 119.99727 * 0.50243 * 18 17 16 20 20 C 1.38233 * 120.00077 * 359.75110 * 19 18 17 21 21 C 1.38231 * 119.99998 * 359.97438 * 20 19 18 22 22 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 23 23 C 1.46846 * 111.00467 * 64.94028 * 10 9 7 24 24 H 0.97003 * 120.00586 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46959 * 294.98231 * 9 7 2 26 26 H 1.08998 * 109.47508 * 54.98775 * 9 7 2 27 27 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 28 28 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 29 29 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 30 30 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 31 31 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 32 32 H 1.00901 * 110.99260 * 209.23768 * 14 13 12 33 33 H 1.09006 * 109.46720 * 299.99778 * 15 14 13 34 34 H 1.09002 * 109.47369 * 59.99427 * 15 14 13 35 35 H 1.08006 * 119.99762 * 359.97438 * 17 16 15 36 36 H 1.08000 * 120.00493 * 180.22518 * 18 17 16 37 37 H 1.08003 * 119.99987 * 179.72462 * 19 18 17 38 38 H 1.08009 * 119.99793 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.99729 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.50148 * 182.40235 * 22 13 12 41 41 H 1.08994 * 109.53641 * 62.30127 * 22 13 12 42 42 H 1.09006 * 109.45826 * 294.17926 * 23 10 9 43 43 H 1.09003 * 109.46067 * 54.15415 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4463 2.6528 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5115 -1.1938 -0.0056 10 7 4.0018 -2.5731 0.1173 11 6 3.5219 -3.1935 1.3587 12 6 4.1669 -4.5714 1.5246 13 6 3.8054 -5.4469 0.3215 14 7 4.4683 -6.7520 0.4456 15 6 3.6696 -7.6723 1.2660 16 6 4.3795 -8.9975 1.3701 17 6 4.1322 -9.9890 0.4392 18 6 4.7870 -11.2029 0.5318 19 6 5.6814 -11.4289 1.5614 20 6 5.9247 -10.4392 2.4953 21 6 5.2742 -9.2234 2.3994 22 6 4.2732 -4.7553 -0.9620 23 6 3.6251 -3.3722 -1.0557 24 1 -0.4851 0.8400 -0.0004 25 1 3.8710 -0.7624 -0.9399 26 1 3.8783 -0.6018 0.8329 27 1 3.7891 -2.5630 2.2067 28 1 2.4383 -3.3027 1.3148 29 1 3.7985 -5.0381 2.4381 30 1 5.2498 -4.4616 1.5824 31 1 2.7253 -5.5889 0.2858 32 1 4.6580 -7.1489 -0.4624 33 1 3.5391 -7.2504 2.2626 34 1 2.6939 -7.8185 0.8027 35 1 3.4299 -9.8141 -0.3625 36 1 4.5966 -11.9763 -0.1975 37 1 6.1896 -12.3789 1.6364 38 1 6.6232 -10.6160 3.3000 39 1 5.4640 -8.4503 3.1293 40 1 3.9807 -5.3535 -1.8250 41 1 5.3578 -4.6485 -0.9440 42 1 2.5409 -3.4805 -1.0883 43 1 3.9674 -2.8714 -1.9614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595512399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:06 Heat of formation + Delta-G solvation = 2.610150 kcal Electronic energy + Delta-G solvation = -20648.797113 eV Core-core repulsion = 17692.155191 eV Total energy + Delta-G solvation = -2956.641922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.42387 -39.82746 -37.12202 -34.85077 -33.47575 -31.75951 -31.70399 -31.22928 -28.73551 -26.28892 -24.50460 -23.91289 -23.39540 -22.37663 -21.92384 -20.65257 -18.88723 -17.73923 -17.06581 -16.68466 -16.15123 -16.04735 -15.88657 -15.80573 -15.49099 -15.16329 -14.54756 -14.25785 -14.23715 -14.18144 -13.74043 -13.47369 -13.36385 -13.15991 -12.90961 -12.85548 -12.38095 -12.09958 -12.03001 -11.92802 -11.80623 -11.76577 -11.70369 -11.27812 -11.21098 -10.80640 -9.78135 -9.69091 -9.36993 -8.99151 -8.33098 -6.38495 0.45771 0.55371 1.35247 1.36852 1.48859 2.33046 2.82547 3.01849 3.26114 3.38435 3.79497 3.90838 3.97528 4.03500 4.20867 4.30141 4.33015 4.38586 4.43466 4.58244 4.61397 4.67424 4.70086 4.80542 4.83631 4.85452 4.92964 5.02494 5.04205 5.14497 5.16174 5.18632 5.21406 5.28713 5.37806 5.54541 5.60704 5.66734 5.75704 6.02754 6.09548 6.17315 6.34877 6.43453 6.47212 6.68288 7.28813 8.83223 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.046004 B = 0.003007 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.492970 B = 9310.049558 C = 9364.556119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.549 4.549 8 H 0.033 0.967 9 C 0.157 3.843 10 N -0.529 5.529 11 C 0.065 3.935 12 C -0.088 4.088 13 C 0.095 3.905 14 N -0.672 5.672 15 C 0.099 3.901 16 C -0.091 4.091 17 C -0.126 4.126 18 C -0.128 4.128 19 C -0.127 4.127 20 C -0.129 4.129 21 C -0.113 4.113 22 C -0.103 4.103 23 C 0.064 3.936 24 H 0.266 0.734 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.007 0.993 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.346 0.654 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.126 0.874 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.007 0.993 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.520 -20.905 2.023 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.588 4.588 8 H 0.051 0.949 9 C 0.030 3.970 10 N -0.252 5.252 11 C -0.064 4.064 12 C -0.127 4.127 13 C -0.015 4.015 14 N -0.304 5.304 15 C -0.029 4.029 16 C -0.092 4.092 17 C -0.144 4.144 18 C -0.146 4.146 19 C -0.145 4.145 20 C -0.147 4.147 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.065 4.065 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.025 0.975 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.165 0.835 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.144 0.856 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.025 0.975 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.287 -20.588 2.567 24.637 hybrid contribution -2.212 0.858 -0.649 2.460 sum 11.075 -19.730 1.918 22.707 Atomic orbital electron populations 1.70079 1.08385 1.28198 1.52290 1.25952 0.95543 1.03539 0.93817 0.85664 0.79544 0.78160 0.79302 1.19079 1.21044 1.16787 1.21909 0.92804 0.93126 1.50975 0.94926 1.20086 0.91770 0.88200 0.96986 1.62429 1.57922 1.02566 1.02304 1.21882 0.96162 0.95711 0.92617 1.21470 1.01447 0.92417 0.97349 1.21430 0.94970 0.89275 0.95824 1.60523 1.47158 1.02309 1.20374 1.20902 0.93522 0.89579 0.98935 1.19834 0.98177 0.94934 0.96220 1.21257 1.00457 0.93871 0.98850 1.21410 0.96856 0.97304 0.98998 1.21484 0.98320 0.99998 0.94746 1.21444 0.99995 0.93387 0.99882 1.21220 0.96098 0.97640 0.98168 1.21674 1.01772 0.94063 0.96575 1.21889 0.96638 0.94245 0.93729 0.92512 0.95228 0.94944 0.91875 0.97454 0.91534 0.90533 0.95736 0.83471 0.90609 0.94596 0.85624 0.84250 0.84046 0.84361 0.85819 0.90359 0.89915 0.97492 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 2 C 0.01 0.54 5.47 84.66 0.46 1.01 16 3 Si 0.95 44.07 27.57 68.60 1.89 45.96 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.24 -10.55 6.40 99.48 0.64 -9.91 16 7 C -0.55 -31.47 8.27 25.60 0.21 -31.26 16 8 H 0.03 2.09 6.11 -2.91 -0.02 2.07 16 9 C 0.16 7.56 4.22 85.56 0.36 7.93 16 10 N -0.53 -22.09 4.86 -900.92 -4.38 -26.47 16 11 C 0.07 2.59 5.03 86.33 0.43 3.03 16 12 C -0.09 -2.74 5.59 30.65 0.17 -2.57 16 13 C 0.09 2.70 2.56 44.99 0.12 2.81 16 14 N -0.67 -15.72 6.30 -495.15 -3.12 -18.85 16 15 C 0.10 2.17 5.61 85.56 0.48 2.65 16 16 C -0.09 -1.85 5.39 -19.87 -0.11 -1.96 16 17 C -0.13 -2.27 9.70 22.27 0.22 -2.06 16 18 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 19 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 20 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 21 C -0.11 -2.18 9.70 22.27 0.22 -1.96 16 22 C -0.10 -2.96 5.36 30.64 0.16 -2.79 16 23 C 0.06 2.44 5.12 86.32 0.44 2.89 16 24 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.03 1.39 7.77 -2.39 -0.02 1.38 16 26 H 0.03 1.56 6.83 -2.39 -0.02 1.54 16 27 H 0.06 2.50 8.12 -2.39 -0.02 2.48 16 28 H 0.01 0.33 6.73 -2.39 -0.02 0.32 16 29 H 0.07 1.90 7.54 -2.39 -0.02 1.88 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.02 0.79 7.80 -2.39 -0.02 0.77 16 32 H 0.35 7.31 8.35 -89.69 -0.75 6.56 16 33 H 0.08 1.73 7.46 -2.38 -0.02 1.71 16 34 H 0.04 0.79 8.00 -2.39 -0.02 0.78 16 35 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 38 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.12 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 42 H 0.01 0.30 6.86 -2.38 -0.02 0.29 16 43 H 0.07 2.57 8.08 -2.39 -0.02 2.55 16 Total: -1.00 -65.95 338.14 -1.31 -67.26 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.16 Total: 18.94 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 3.84 Total: -27.58 kcal Atomic # 7 Polarization: -97.39 SS G_CDS: -7.20 Total: -104.59 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.89 Total: 45.96 kcal Total: -65.95 -1.31 -67.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595512399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.873 kcal (2) G-P(sol) polarization free energy of solvation -65.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds