Wall clock time and date at job start Mon Mar 30 2020 01:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47168 * 2 1 4 4 C 1.52997 * 109.47458 * 120.00650 * 2 1 3 5 5 C 1.52999 * 109.47106 * 174.99886 * 4 2 1 6 6 N 1.46502 * 109.46600 * 179.97438 * 5 4 2 7 7 C 1.46505 * 119.99980 * 269.99389 * 6 5 4 8 8 C 1.50703 * 109.47479 * 270.00457 * 7 6 5 9 9 H 1.07998 * 119.99349 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99897 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99584 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00165 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46954 * 89.99607 * 12 10 8 14 14 H 1.48501 * 109.46632 * 209.99811 * 12 10 8 15 15 H 1.48499 * 109.46902 * 329.99396 * 12 10 8 16 16 C 1.39076 * 120.00366 * 90.00131 * 6 5 4 17 17 C 1.39365 * 120.09098 * 4.99685 * 16 6 5 18 18 C 1.39887 * 117.73978 * 179.97438 * 17 16 6 19 19 C 1.43200 * 121.12279 * 179.97438 * 18 17 16 20 20 N 6.88149 * 108.46516 * 187.13301 * 2 1 3 21 21 C 1.40065 * 117.75214 * 359.97438 * 18 17 16 22 22 N 1.31689 * 119.81201 * 0.02562 * 21 18 17 23 23 N 1.28272 * 122.44905 * 359.97438 * 22 21 18 24 24 H 1.09001 * 109.46810 * 299.99942 * 1 2 3 25 25 H 1.08998 * 109.47287 * 59.99149 * 1 2 3 26 26 H 1.08996 * 109.47240 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46701 * 240.00602 * 2 1 3 28 28 H 1.08999 * 109.47264 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47311 * 300.00350 * 3 2 1 30 30 H 1.09001 * 109.47208 * 60.00301 * 3 2 1 31 31 H 1.08999 * 109.47353 * 54.99327 * 4 2 1 32 32 H 1.09005 * 109.46708 * 294.99418 * 4 2 1 33 33 H 1.09000 * 109.46982 * 60.00107 * 5 4 2 34 34 H 1.08996 * 109.47177 * 299.99392 * 5 4 2 35 35 H 1.09002 * 109.46818 * 30.00590 * 7 6 5 36 36 H 1.08998 * 109.47224 * 150.00424 * 7 6 5 37 37 H 0.96996 * 119.99505 * 180.02562 * 11 10 8 38 38 H 1.08003 * 121.12786 * 359.70306 * 17 16 6 39 39 H 1.08006 * 120.09830 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.8311 1.1877 6 7 4.0532 -1.5213 2.3841 7 6 4.4018 -0.7532 3.5820 8 6 5.8558 -0.3613 3.5221 9 1 6.4596 -0.6547 2.6761 10 6 6.4147 0.3727 4.5467 11 7 7.6837 0.7142 4.4946 12 14 5.3700 0.8807 6.0095 13 1 5.4402 -0.1699 7.0567 14 1 5.8788 2.1628 6.5596 15 1 3.9605 1.0531 5.5750 16 6 4.1861 -2.9057 2.3828 17 6 3.9554 -3.6287 1.2140 18 6 4.1036 -5.0187 1.2681 19 6 3.8839 -5.8321 0.1103 20 7 3.7096 -6.4767 -0.8105 21 6 4.4742 -5.5878 2.4931 22 7 4.6691 -4.8153 3.5416 23 7 4.5333 -3.5408 3.4923 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -1.7199 1.2950 32 1 1.7518 -0.1584 2.1369 33 1 3.9995 0.1674 1.1419 34 1 3.8532 -1.3940 0.3000 35 1 3.7853 0.1444 3.6301 36 1 4.2261 -1.3627 4.4684 37 1 8.0770 1.2302 5.2156 38 1 3.6676 -3.1331 0.2985 39 1 4.5997 -6.6572 2.5776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596169647.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:55 Heat of formation + Delta-G solvation = 67.948849 kcal Electronic energy + Delta-G solvation = -20728.914257 eV Core-core repulsion = 17671.565290 eV Total energy + Delta-G solvation = -3057.348967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = -0.06 seconds Orbital eigenvalues (eV) -42.01729 -38.97153 -37.93554 -36.76031 -34.80369 -34.17888 -32.49663 -31.06031 -28.67351 -27.94118 -26.53807 -25.49551 -24.24514 -22.76266 -20.81216 -19.93382 -19.00393 -18.73293 -17.59625 -17.17919 -16.47605 -16.39157 -15.96407 -15.53451 -15.08847 -14.76688 -14.63422 -14.53097 -14.38978 -14.16924 -13.93427 -13.72299 -13.46049 -13.32619 -12.97885 -12.71849 -12.43267 -12.31157 -12.08897 -11.98091 -11.80404 -11.60463 -11.49034 -11.39512 -11.32246 -11.08499 -10.76355 -10.52385 -8.65319 -8.26928 -6.30916 -0.66339 0.22394 1.33734 1.39066 1.43241 1.49551 1.84913 2.01090 2.36900 2.46930 2.78763 3.09040 3.44092 3.53717 3.63580 3.91959 3.98266 4.04561 4.15402 4.28990 4.39747 4.53616 4.68569 4.78957 4.81706 4.87604 4.89192 4.93840 5.01992 5.10420 5.14723 5.17855 5.21369 5.38038 5.51653 5.53407 5.57151 5.98618 6.18908 6.38154 6.43486 6.71388 7.32669 7.96535 8.89784 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.010793 B = 0.007101 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.587868 B = 3942.334471 C = 5942.243454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.153 4.153 4 C -0.125 4.125 5 C 0.116 3.884 6 N -0.578 5.578 7 C 0.235 3.765 8 C -0.526 4.526 9 H 0.029 0.971 10 C 0.015 3.985 11 N -0.947 5.947 12 Si 0.940 3.060 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.239 1.239 16 C 0.344 3.656 17 C -0.124 4.124 18 C 0.021 3.979 19 C 0.288 3.712 20 N -0.420 5.420 21 C 0.019 3.981 22 N -0.225 5.225 23 N -0.323 5.323 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.034 0.966 37 H 0.266 0.734 38 H 0.181 0.819 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.786 -4.468 -9.118 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.211 4.211 4 C -0.164 4.164 5 C -0.007 4.007 6 N -0.287 5.287 7 C 0.113 3.887 8 C -0.565 4.565 9 H 0.048 0.952 10 C -0.182 4.182 11 N -0.588 5.588 12 Si 0.763 3.237 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.162 1.162 16 C 0.102 3.898 17 C -0.161 4.161 18 C 0.007 3.993 19 C -0.029 4.029 20 N -0.096 5.096 21 C -0.154 4.154 22 N -0.063 5.063 23 N -0.175 5.175 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.198 0.802 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -14.545 -4.994 -8.823 17.729 hybrid contribution 0.194 0.613 -0.187 0.670 sum -14.351 -4.381 -9.010 17.502 Atomic orbital electron populations 1.21807 0.94393 1.01954 1.01967 1.21043 0.96303 0.96094 0.97354 1.21932 1.01061 0.96139 1.01921 1.22052 0.94144 1.01223 0.98974 1.21855 0.94651 0.98101 0.86044 1.46732 1.65635 1.00597 1.15734 1.19370 0.93732 0.91299 0.84330 1.21536 0.95503 1.33511 1.05968 0.95236 1.25733 0.95929 0.95549 1.01032 1.70050 1.14008 1.40091 1.34624 0.85829 0.80503 0.77810 0.79532 1.19840 1.20831 1.16165 1.20099 0.91192 0.87594 0.90947 1.22135 1.02065 0.92591 0.99285 1.16628 1.01599 0.91130 0.89931 1.24926 0.93252 0.92694 0.91983 1.81362 1.08510 1.09309 1.10370 1.24566 0.99490 1.03463 0.87907 1.72817 1.08749 0.97936 1.26843 1.72909 1.17538 1.02921 1.24122 0.93184 0.91756 0.92404 0.89902 0.92995 0.91668 0.93270 0.91345 0.92540 0.90247 0.89110 0.93894 0.94775 0.92509 0.80185 0.77630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.19 71.98 0.66 -1.49 16 2 C -0.09 -1.51 2.92 -10.80 -0.03 -1.54 16 3 C -0.15 -2.82 8.95 71.98 0.64 -2.18 16 4 C -0.13 -2.70 5.01 30.59 0.15 -2.54 16 5 C 0.12 3.11 5.02 86.38 0.43 3.54 16 6 N -0.58 -20.83 2.57 -707.85 -1.82 -22.65 16 7 C 0.23 10.44 4.30 85.63 0.37 10.80 16 8 C -0.53 -29.00 9.94 25.60 0.25 -28.74 16 9 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 10 C 0.02 0.88 5.47 84.65 0.46 1.34 16 11 N -0.95 -58.32 13.96 21.45 0.30 -58.02 16 12 Si 0.94 42.79 27.47 68.60 1.88 44.67 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 16 C 0.34 11.91 7.45 133.08 0.99 12.90 16 17 C -0.12 -3.11 9.11 22.94 0.21 -2.90 16 18 C 0.02 0.49 5.76 -21.19 -0.12 0.36 16 19 C 0.29 6.15 15.43 88.32 1.36 7.51 16 20 N -0.42 -10.26 18.55 19.02 0.35 -9.91 16 21 C 0.02 0.46 11.08 85.16 0.94 1.40 16 22 N -0.22 -7.74 11.47 -56.44 -0.65 -8.39 16 23 N -0.32 -12.91 10.24 -55.17 -0.56 -13.48 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.06 6.57 -2.39 -0.02 1.04 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.08 2.36 6.49 -2.39 -0.02 2.35 16 34 H 0.09 1.97 6.03 -2.39 -0.01 1.95 16 35 H 0.04 1.81 7.13 -2.39 -0.02 1.79 16 36 H 0.03 1.60 6.75 -2.39 -0.02 1.59 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.18 3.35 6.14 -2.91 -0.02 3.33 16 39 H 0.21 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -68.82 333.31 6.83 -61.99 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.00 Total: 7.31 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 6.33 Total: -1.52 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -2.38 Total: -112.45 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Total: -68.82 6.83 -61.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596169647.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.941 kcal (2) G-P(sol) polarization free energy of solvation -68.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.06 seconds