Wall clock time and date at job start Mon Mar 30 2020 01:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47186 * 2 1 4 4 C 1.52999 * 109.47078 * 239.99609 * 2 1 3 5 5 C 1.53003 * 109.46688 * 119.99837 * 2 1 3 6 6 N 1.46503 * 109.46970 * 60.00185 * 5 2 1 7 7 C 1.46501 * 119.99862 * 269.99596 * 6 5 2 8 8 C 1.50706 * 109.47123 * 270.00354 * 7 6 5 9 9 H 1.07992 * 120.00284 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99881 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99903 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00063 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46593 * 90.00395 * 12 10 8 14 14 H 1.48493 * 109.47037 * 210.00325 * 12 10 8 15 15 H 1.48501 * 109.46892 * 330.00444 * 12 10 8 16 16 C 1.39072 * 120.00147 * 90.00040 * 6 5 2 17 17 C 1.39358 * 120.09462 * 4.72169 * 16 6 5 18 18 C 1.39897 * 117.74255 * 180.28179 * 17 16 6 19 19 C 1.43196 * 121.12644 * 180.02562 * 18 17 16 20 20 N 6.33135 * 143.39206 * 202.81799 * 2 1 3 21 21 C 1.40070 * 117.74694 * 359.97438 * 18 17 16 22 22 N 1.31685 * 119.81459 * 0.02562 * 21 18 17 23 23 N 1.28269 * 122.45204 * 359.97438 * 22 21 18 24 24 H 1.08997 * 109.47468 * 300.00483 * 1 2 3 25 25 H 1.09004 * 109.47029 * 59.99864 * 1 2 3 26 26 H 1.08997 * 109.47769 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46759 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.46882 * 299.99478 * 3 2 1 29 29 H 1.09001 * 109.47182 * 59.99889 * 3 2 1 30 30 H 1.08998 * 109.47099 * 300.00457 * 4 2 1 31 31 H 1.09003 * 109.47214 * 60.00642 * 4 2 1 32 32 H 1.08999 * 109.47133 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47352 * 299.99911 * 5 2 1 34 34 H 1.08999 * 109.47059 * 179.97438 * 5 2 1 35 35 H 1.09000 * 109.47338 * 29.99976 * 7 6 5 36 36 H 1.09001 * 109.47446 * 150.00121 * 7 6 5 37 37 H 0.97002 * 120.00044 * 179.97438 * 11 10 8 38 38 H 1.07996 * 121.12989 * 0.25070 * 17 16 6 39 39 H 1.08002 * 120.09152 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 7 1.5515 -2.1025 1.2493 7 6 0.2714 -2.4268 1.8836 8 6 0.5022 -2.7748 3.3317 9 1 1.5023 -2.7566 3.7386 10 6 -0.5636 -3.1163 4.1369 11 7 -1.7815 -3.1389 3.6412 12 14 -0.2775 -3.5484 5.9316 13 1 -0.3682 -2.3175 6.7575 14 1 -1.3079 -4.5204 6.3771 15 1 1.0711 -4.1505 6.0869 16 6 2.3031 -3.1058 0.6471 17 6 3.5651 -2.8188 0.1302 18 6 4.2759 -3.8635 -0.4701 19 6 5.5788 -3.6498 -1.0244 20 7 6.6124 -3.4801 -1.4642 21 6 3.6704 -5.1260 -0.5097 22 7 2.4714 -5.2936 0.0083 23 7 1.8194 -4.3359 0.5588 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.6765 -0.2074 2.1393 34 1 3.1299 -0.7217 1.2491 35 1 -0.3947 -1.5665 1.8185 36 1 -0.1820 -3.2767 1.3735 37 1 -2.5313 -3.3796 4.2076 38 1 3.9800 -1.8236 0.1906 39 1 4.1855 -5.9596 -0.9639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596172439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:01 Heat of formation + Delta-G solvation = 90.066571 kcal Electronic energy + Delta-G solvation = -21420.582778 eV Core-core repulsion = 18364.192908 eV Total energy + Delta-G solvation = -3056.389870 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79291 -38.36611 -36.84432 -34.95113 -33.10057 -32.67615 -30.76951 -28.09344 -27.22161 -26.91209 -25.76977 -25.00233 -23.37591 -21.84738 -19.06082 -18.47529 -17.34461 -16.61287 -16.34990 -15.73072 -15.19214 -14.80524 -14.43897 -14.36325 -13.87099 -13.47975 -13.38547 -13.30272 -13.13686 -12.72672 -12.51383 -12.21301 -12.06217 -11.56864 -11.46727 -11.35975 -11.26422 -10.90028 -10.77298 -10.70362 -10.52780 -10.34185 -10.23571 -10.10744 -9.85275 -9.41082 -9.17375 -8.46967 -7.18890 -6.08396 -4.14782 0.56020 1.48655 2.43605 2.98759 3.26796 3.34565 3.35677 3.43897 3.66205 4.06365 4.39513 4.69994 4.70684 4.84259 4.90768 4.99733 5.04935 5.23813 5.26883 5.48746 5.60385 5.63781 5.67411 5.82581 5.87077 5.97160 6.03957 6.06847 6.13235 6.20621 6.23643 6.31765 6.47154 6.63461 6.93393 7.25438 7.35070 7.69999 7.90155 7.99110 8.15604 8.87723 9.31138 9.50340 10.97734 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.006790 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.296527 B = 4123.000417 C = 5393.087200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.138 4.138 4 C -0.142 4.142 5 C 0.128 3.872 6 N -0.563 5.563 7 C 0.245 3.755 8 C -0.530 4.530 9 H 0.056 0.944 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.895 3.105 13 H -0.281 1.281 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.362 3.638 17 C -0.144 4.144 18 C 0.004 3.996 19 C 0.266 3.734 20 N -0.409 5.409 21 C -0.007 4.007 22 N -0.190 5.190 23 N -0.268 5.268 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.264 0.736 38 H 0.150 0.850 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.512 5.832 -8.063 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.196 4.196 4 C -0.199 4.199 5 C 0.004 3.996 6 N -0.270 5.270 7 C 0.127 3.873 8 C -0.569 4.569 9 H 0.074 0.926 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.723 3.277 13 H -0.207 1.207 14 H -0.210 1.210 15 H -0.200 1.200 16 C 0.120 3.880 17 C -0.182 4.182 18 C -0.010 4.010 19 C -0.050 4.050 20 N -0.085 5.085 21 C -0.178 4.178 22 N -0.031 5.031 23 N -0.122 5.122 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.168 0.832 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.480 5.213 -8.232 12.284 hybrid contribution 0.959 0.662 0.956 1.507 sum 8.439 5.874 -7.276 12.597 Atomic orbital electron populations 1.21960 0.93647 1.03186 1.01119 1.21048 0.97113 0.95146 0.95635 1.21805 1.00559 0.95231 1.01960 1.22002 1.00146 1.00823 0.96973 1.21626 0.98225 0.81729 0.98040 1.47205 1.22428 1.03262 1.54066 1.19608 0.77588 0.97874 0.92243 1.21413 0.93696 1.47126 0.94658 0.92592 1.24871 0.94972 0.95175 0.98642 1.69913 0.98679 1.48162 1.36194 0.86547 0.78080 0.78232 0.84859 1.20740 1.21047 1.19982 1.19937 0.88117 0.90490 0.89495 1.21990 0.94740 1.00198 1.01303 1.16729 0.88334 0.95770 1.00167 1.25362 0.92492 0.93620 0.93561 1.81240 1.11070 1.07485 1.08708 1.23931 0.95269 0.95372 1.03249 1.72909 1.04610 1.23118 1.02492 1.73152 1.27031 0.96496 1.15506 0.92319 0.93506 0.91150 0.92901 0.92601 0.92332 0.92411 0.92873 0.93067 0.89116 0.91648 0.93891 0.92958 0.92643 0.83249 0.81566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.22 37.16 0.27 -1.72 16 2 C -0.09 -1.09 0.84 -154.51 -0.13 -1.22 16 3 C -0.14 -1.39 8.47 37.16 0.31 -1.07 16 4 C -0.14 -1.71 6.97 37.16 0.26 -1.46 16 5 C 0.13 1.85 4.53 -4.04 -0.02 1.83 16 6 N -0.56 -10.29 2.07 -175.08 -0.36 -10.65 16 7 C 0.25 5.64 4.14 -5.19 -0.02 5.62 16 8 C -0.53 -13.77 9.39 -34.44 -0.32 -14.10 16 9 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 10 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 12 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.36 6.44 5.94 -154.80 -0.92 5.52 16 17 C -0.14 -2.03 7.16 -38.54 -0.28 -2.30 16 18 C 0.00 0.05 5.76 -106.67 -0.61 -0.56 16 19 C 0.27 3.38 15.42 -22.47 -0.35 3.03 16 20 N -0.41 -5.74 18.54 41.84 0.78 -4.97 16 21 C -0.01 -0.09 11.08 -16.93 -0.19 -0.28 16 22 N -0.19 -3.39 11.47 30.81 0.35 -3.04 16 23 N -0.27 -5.42 10.24 31.21 0.32 -5.10 16 24 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.17 5.99 -51.93 -0.31 0.86 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.82 6.10 -51.93 -0.32 0.51 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.55 6.67 -51.93 -0.35 0.20 16 33 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 34 H 0.07 0.81 6.03 -51.93 -0.31 0.49 16 35 H 0.04 1.01 6.05 -51.93 -0.31 0.69 16 36 H 0.05 1.36 7.32 -51.93 -0.38 0.98 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 38 H 0.15 1.75 5.06 -52.49 -0.27 1.49 16 39 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 323.12 15.07 4.87 4.87 Total: -1.00 -28.64 323.12 -5.59 -34.23 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.17 Total: -2.06 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.09 Total: -5.04 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 1.82 Total: -47.93 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.64 -5.59 -34.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596172439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.299 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds