Wall clock time and date at job start Mon Mar 30 2020 01:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47186 * 2 1 4 4 C 1.52999 * 109.47078 * 239.99609 * 2 1 3 5 5 C 1.53003 * 109.46688 * 119.99837 * 2 1 3 6 6 N 1.46503 * 109.46970 * 60.00185 * 5 2 1 7 7 C 1.46501 * 119.99862 * 269.99596 * 6 5 2 8 8 C 1.50706 * 109.47123 * 270.00354 * 7 6 5 9 9 H 1.07992 * 120.00284 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99881 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99903 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00063 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46593 * 90.00395 * 12 10 8 14 14 H 1.48493 * 109.47037 * 210.00325 * 12 10 8 15 15 H 1.48501 * 109.46892 * 330.00444 * 12 10 8 16 16 C 1.39072 * 120.00147 * 90.00040 * 6 5 2 17 17 C 1.39358 * 120.09462 * 4.72169 * 16 6 5 18 18 C 1.39897 * 117.74255 * 180.28179 * 17 16 6 19 19 C 1.43196 * 121.12644 * 180.02562 * 18 17 16 20 20 N 6.33135 * 143.39206 * 202.81799 * 2 1 3 21 21 C 1.40070 * 117.74694 * 359.97438 * 18 17 16 22 22 N 1.31685 * 119.81459 * 0.02562 * 21 18 17 23 23 N 1.28269 * 122.45204 * 359.97438 * 22 21 18 24 24 H 1.08997 * 109.47468 * 300.00483 * 1 2 3 25 25 H 1.09004 * 109.47029 * 59.99864 * 1 2 3 26 26 H 1.08997 * 109.47769 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46759 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.46882 * 299.99478 * 3 2 1 29 29 H 1.09001 * 109.47182 * 59.99889 * 3 2 1 30 30 H 1.08998 * 109.47099 * 300.00457 * 4 2 1 31 31 H 1.09003 * 109.47214 * 60.00642 * 4 2 1 32 32 H 1.08999 * 109.47133 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47352 * 299.99911 * 5 2 1 34 34 H 1.08999 * 109.47059 * 179.97438 * 5 2 1 35 35 H 1.09000 * 109.47338 * 29.99976 * 7 6 5 36 36 H 1.09001 * 109.47446 * 150.00121 * 7 6 5 37 37 H 0.97002 * 120.00044 * 179.97438 * 11 10 8 38 38 H 1.07996 * 121.12989 * 0.25070 * 17 16 6 39 39 H 1.08002 * 120.09152 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 7 1.5515 -2.1025 1.2493 7 6 0.2714 -2.4268 1.8836 8 6 0.5022 -2.7748 3.3317 9 1 1.5023 -2.7566 3.7386 10 6 -0.5636 -3.1163 4.1369 11 7 -1.7815 -3.1389 3.6412 12 14 -0.2775 -3.5484 5.9316 13 1 -0.3682 -2.3175 6.7575 14 1 -1.3079 -4.5204 6.3771 15 1 1.0711 -4.1505 6.0869 16 6 2.3031 -3.1058 0.6471 17 6 3.5651 -2.8188 0.1302 18 6 4.2759 -3.8635 -0.4701 19 6 5.5788 -3.6498 -1.0244 20 7 6.6124 -3.4801 -1.4642 21 6 3.6704 -5.1260 -0.5097 22 7 2.4714 -5.2936 0.0083 23 7 1.8194 -4.3359 0.5588 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.6765 -0.2074 2.1393 34 1 3.1299 -0.7217 1.2491 35 1 -0.3947 -1.5665 1.8185 36 1 -0.1820 -3.2767 1.3735 37 1 -2.5313 -3.3796 4.2076 38 1 3.9800 -1.8236 0.1906 39 1 4.1855 -5.9596 -0.9639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596172439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:01 Heat of formation + Delta-G solvation = 74.476861 kcal Electronic energy + Delta-G solvation = -21421.258799 eV Core-core repulsion = 18364.192908 eV Total energy + Delta-G solvation = -3057.065891 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.06406 -39.54919 -37.95037 -36.25084 -34.74992 -34.13795 -32.17707 -29.65842 -28.14214 -28.06852 -27.07704 -26.35158 -24.85811 -23.34751 -20.20443 -19.61053 -18.75848 -18.45386 -17.56252 -16.98403 -16.54349 -16.51153 -15.65353 -15.50190 -15.08637 -14.62210 -14.50287 -14.42262 -14.38994 -14.21840 -13.89716 -13.44192 -13.13123 -13.00263 -12.91053 -12.52315 -12.50115 -12.47082 -12.37040 -12.17443 -11.84053 -11.69265 -11.50676 -11.43212 -11.15932 -11.01921 -10.56165 -10.40848 -8.66596 -8.07330 -6.25571 -0.61399 0.28330 1.37279 1.39965 1.42895 1.51596 1.88965 2.10139 2.44124 2.51497 2.83586 3.17470 3.50556 3.58065 3.65269 3.88877 3.95492 3.98805 4.16982 4.42833 4.50059 4.59803 4.75589 4.80221 4.82041 4.95027 4.98273 5.06353 5.10459 5.12492 5.22363 5.22607 5.35444 5.43907 5.49138 5.56709 5.74980 6.14552 6.20341 6.30736 6.52508 6.86429 7.43022 8.04575 8.92591 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.006790 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.296527 B = 4123.000417 C = 5393.087200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.132 4.132 4 C -0.137 4.137 5 C 0.124 3.876 6 N -0.573 5.573 7 C 0.270 3.730 8 C -0.535 4.535 9 H 0.049 0.951 10 C 0.016 3.984 11 N -0.924 5.924 12 Si 0.955 3.045 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.276 1.276 16 C 0.350 3.650 17 C -0.124 4.124 18 C 0.018 3.982 19 C 0.289 3.711 20 N -0.420 5.420 21 C 0.013 3.987 22 N -0.226 5.226 23 N -0.326 5.326 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.032 0.968 36 H 0.013 0.987 37 H 0.264 0.736 38 H 0.180 0.820 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.284 6.918 -8.675 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.189 4.189 4 C -0.195 4.195 5 C 0.002 3.998 6 N -0.281 5.281 7 C 0.149 3.851 8 C -0.574 4.574 9 H 0.068 0.932 10 C -0.184 4.184 11 N -0.564 5.564 12 Si 0.780 3.220 13 H -0.195 1.195 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.107 3.893 17 C -0.161 4.161 18 C 0.003 3.997 19 C -0.028 4.028 20 N -0.096 5.096 21 C -0.160 4.160 22 N -0.065 5.065 23 N -0.178 5.178 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.050 0.950 36 H 0.031 0.969 37 H 0.073 0.927 38 H 0.197 0.803 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 10.271 6.288 -8.857 14.949 hybrid contribution 0.196 0.278 1.031 1.086 sum 10.467 6.566 -7.826 14.626 Atomic orbital electron populations 1.21901 0.95450 1.00889 1.01361 1.21010 0.95572 0.96796 0.94956 1.21760 1.01710 0.92963 1.02511 1.21955 1.01261 0.99187 0.97061 1.21857 0.99728 0.79688 0.98576 1.46936 1.21357 1.04920 1.54910 1.18927 0.79789 0.95720 0.90689 1.21732 0.93208 1.46274 0.96214 0.93243 1.25642 0.94838 0.95348 1.02530 1.70028 0.99405 1.49456 1.37542 0.85613 0.77603 0.78245 0.80501 1.19450 1.21052 1.20062 1.20057 0.89305 0.89825 0.90140 1.22180 0.92918 1.01693 0.99289 1.16620 0.88327 0.95245 0.99466 1.24877 0.91753 0.93140 0.93005 1.81298 1.11365 1.07896 1.09058 1.24523 0.93851 0.96801 1.00812 1.72825 1.06424 1.23084 1.04170 1.72999 1.29152 0.97993 1.17673 0.93384 0.91878 0.94681 0.90982 0.91528 0.92399 0.95116 0.91719 0.91080 0.90441 0.88810 0.95000 0.96905 0.92675 0.80315 0.77899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 7.22 71.98 0.52 -3.44 16 2 C -0.08 -1.92 0.84 -52.18 -0.04 -1.96 16 3 C -0.13 -2.25 8.47 71.98 0.61 -1.64 16 4 C -0.14 -3.01 6.97 71.98 0.50 -2.51 16 5 C 0.12 3.46 4.53 86.38 0.39 3.85 16 6 N -0.57 -21.35 2.07 -707.84 -1.47 -22.81 16 7 C 0.27 13.10 4.14 85.63 0.35 13.45 16 8 C -0.54 -28.74 9.39 25.60 0.24 -28.50 16 9 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 10 C 0.02 0.86 5.46 84.66 0.46 1.32 16 11 N -0.92 -53.63 13.29 21.45 0.28 -53.34 16 12 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 13 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 C 0.35 12.42 5.94 133.07 0.79 13.21 16 17 C -0.12 -3.18 7.16 22.94 0.16 -3.01 16 18 C 0.02 0.41 5.76 -21.19 -0.12 0.29 16 19 C 0.29 6.24 15.42 88.33 1.36 7.60 16 20 N -0.42 -10.29 18.54 19.00 0.35 -9.93 16 21 C 0.01 0.34 11.08 85.16 0.94 1.29 16 22 N -0.23 -8.10 11.47 -56.44 -0.65 -8.75 16 23 N -0.33 -13.60 10.24 -55.17 -0.56 -14.17 16 24 H 0.05 1.43 8.08 -2.39 -0.02 1.41 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.03 1.24 5.99 -2.39 -0.01 1.22 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.03 0.84 6.10 -2.39 -0.01 0.83 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.25 6.67 -2.39 -0.02 1.24 16 33 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 34 H 0.09 2.03 6.03 -2.39 -0.01 2.02 16 35 H 0.03 1.60 6.05 -2.39 -0.01 1.59 16 36 H 0.01 0.72 7.32 -2.39 -0.02 0.70 16 37 H 0.26 14.57 8.31 -92.71 -0.77 13.79 16 38 H 0.18 3.44 5.06 -2.91 -0.01 3.43 16 39 H 0.20 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -65.20 323.12 7.22 -57.98 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.06 Total: 5.39 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 6.17 Total: -0.04 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -2.04 Total: -109.00 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -65.20 7.22 -57.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596172439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.457 kcal (2) G-P(sol) polarization free energy of solvation -65.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds