Wall clock time and date at job start Mon Mar 30 2020 01:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46660 * 2 1 4 4 C 1.52992 * 109.47374 * 239.99906 * 2 1 3 5 5 C 1.50695 * 109.47296 * 59.99750 * 4 2 1 6 6 H 1.08000 * 120.00189 * 359.97438 * 5 4 2 7 7 C 1.37887 * 120.00106 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99843 * 359.97438 * 7 5 4 9 9 Si 1.86790 * 120.00012 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47323 * 89.99801 * 9 7 5 11 11 H 1.48497 * 109.47199 * 209.99668 * 9 7 5 12 12 H 1.48501 * 109.47525 * 329.99599 * 9 7 5 13 13 C 1.53005 * 109.47269 * 119.99190 * 2 1 3 14 14 N 1.46498 * 109.47141 * 300.00969 * 13 2 1 15 15 C 1.31326 * 120.00467 * 120.00082 * 14 13 2 16 16 N 1.33958 * 125.93895 * 359.96973 * 15 14 13 17 17 C 1.33217 * 109.98364 * 180.02562 * 16 15 14 18 18 C 1.40629 * 131.70725 * 179.97438 * 17 16 15 19 19 C 1.36365 * 119.37243 * 179.97438 * 18 17 16 20 20 C 1.40148 * 119.60148 * 359.97438 * 19 18 17 21 21 C 1.35379 * 120.10999 * 359.97090 * 20 19 18 22 22 N 1.35670 * 120.66445 * 0.06165 * 21 20 19 23 23 N 1.38447 * 125.94518 * 179.97438 * 15 14 13 24 24 H 0.97000 * 126.88932 * 0.02562 * 23 15 14 25 25 H 1.08998 * 109.47092 * 299.99984 * 1 2 3 26 26 H 1.08997 * 109.47252 * 60.00385 * 1 2 3 27 27 H 1.09008 * 109.46617 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47047 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46987 * 299.99311 * 3 2 1 30 30 H 1.08998 * 109.47361 * 59.99620 * 3 2 1 31 31 H 1.09005 * 109.47466 * 180.02562 * 4 2 1 32 32 H 1.09008 * 109.46986 * 299.99452 * 4 2 1 33 33 H 0.96991 * 120.00131 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.46972 * 180.02562 * 13 2 1 35 35 H 1.09008 * 109.46523 * 60.00339 * 13 2 1 36 36 H 1.07996 * 120.31566 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.19902 * 179.72819 * 19 18 17 38 38 H 1.07994 * 119.94927 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.66635 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.5377 -0.0109 -2.4796 6 1 0.9164 0.8669 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5516 -3.8525 9 14 1.2472 0.3977 -5.2571 10 1 2.2251 1.4394 -5.6620 11 1 1.0820 -0.5818 -6.3610 12 1 -0.0609 1.0351 -4.9611 13 6 2.0401 -0.7211 1.2494 14 7 1.5516 -0.0305 2.4454 15 6 0.7966 -0.6686 3.3100 16 7 0.4018 -1.9453 3.2170 17 6 -0.3543 -2.2656 4.2661 18 6 -0.9983 -3.4632 4.6245 19 6 -1.7226 -3.5137 5.7788 20 6 -1.8138 -2.3740 6.5892 21 6 -1.1853 -1.2309 6.2269 22 7 -0.4633 -1.1720 5.0798 23 7 0.2703 -0.1390 4.4758 24 1 0.3858 0.7647 4.8089 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 3.1299 1.4427 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6765 1.9564 0.8899 31 1 3.1301 -0.7216 -1.2489 32 1 1.6768 -1.7490 -1.2491 33 1 2.8610 -1.8830 -4.7334 34 1 3.1301 -0.7207 1.2495 35 1 1.6767 -1.7488 1.2494 36 1 -0.9201 -4.3348 3.9916 37 1 -2.2262 -4.4253 6.0647 38 1 -2.3862 -2.4075 7.5044 39 1 -1.2607 -0.3568 6.8566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596240930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:36 Heat of formation + Delta-G solvation = 119.455288 kcal Electronic energy + Delta-G solvation = -20627.253368 eV Core-core repulsion = 17572.137888 eV Total energy + Delta-G solvation = -3055.115480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.44930 -39.21489 -38.32020 -35.36215 -34.72301 -33.81608 -31.86314 -30.45302 -28.95182 -27.94516 -27.08915 -25.14208 -24.79942 -23.99213 -21.78470 -20.01591 -19.40642 -18.34690 -18.20448 -17.33918 -17.20842 -16.67041 -16.33534 -15.80630 -15.54329 -15.43118 -15.08262 -14.37366 -13.95544 -13.89260 -13.48488 -13.29416 -12.82726 -12.77931 -12.69352 -12.53796 -12.49174 -12.36195 -12.31053 -11.98503 -11.50392 -11.46207 -11.12524 -10.99400 -10.79179 -10.50920 -10.04233 -9.87511 -8.20254 -8.09733 -6.21585 -0.26270 0.07089 0.14500 1.39171 1.41947 1.52631 1.99561 2.43973 2.55935 2.63454 3.19091 3.21681 3.70587 3.81127 4.05018 4.11542 4.24944 4.29845 4.36566 4.51254 4.67915 4.85835 4.91605 4.94907 5.05598 5.07967 5.12201 5.13538 5.17642 5.30324 5.42158 5.45337 5.49443 5.53023 5.57867 5.69821 5.86565 5.90705 6.33046 6.40562 6.91137 6.93584 7.36315 7.45001 8.99949 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.034585 B = 0.003583 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.413306 B = 7813.179788 C = 8124.196619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.051 4.051 3 C -0.100 4.100 4 C 0.045 3.955 5 C -0.517 4.517 6 H 0.064 0.936 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.263 1.263 13 C 0.111 3.889 14 N -0.623 5.623 15 C 0.529 3.471 16 N -0.649 5.649 17 C 0.364 3.636 18 C -0.174 4.174 19 C 0.003 3.997 20 C -0.173 4.173 21 C 0.117 3.883 22 N -0.288 5.288 23 N -0.532 5.532 24 H 0.462 0.538 25 H 0.040 0.960 26 H 0.047 0.953 27 H 0.022 0.978 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.056 0.944 31 H -0.016 1.016 32 H -0.021 1.021 33 H 0.261 0.739 34 H 0.042 0.958 35 H 0.025 0.975 36 H 0.160 0.840 37 H 0.193 0.807 38 H 0.211 0.789 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.988 -1.773 29.607 32.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.052 4.052 3 C -0.157 4.157 4 C 0.007 3.993 5 C -0.555 4.555 6 H 0.082 0.918 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.788 3.212 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.020 4.020 14 N -0.364 5.364 15 C 0.163 3.837 16 N -0.392 5.392 17 C 0.112 3.888 18 C -0.198 4.198 19 C -0.022 4.022 20 C -0.197 4.197 21 C -0.010 4.010 22 N -0.065 5.065 23 N -0.277 5.277 24 H 0.314 0.686 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.002 0.998 32 H -0.003 1.003 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.178 0.822 37 H 0.210 0.790 38 H 0.228 0.772 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -13.100 -1.187 28.572 31.454 hybrid contribution 0.123 0.306 -0.793 0.859 sum -12.977 -0.881 27.779 30.673 Atomic orbital electron populations 1.21390 0.95398 0.99052 0.99482 1.20521 0.95284 0.96261 0.93130 1.21426 0.99040 0.95229 1.00032 1.18959 0.93944 0.93775 0.92594 1.21571 1.30533 1.11962 0.91402 0.91763 1.26008 0.95615 0.95920 1.02718 1.70136 1.38755 1.24907 1.24151 0.85463 0.79053 0.78216 0.78422 1.19767 1.20778 1.18761 1.21359 0.96777 0.95049 0.88860 1.72506 1.24069 1.32561 1.07226 1.20674 0.91606 0.85092 0.86371 1.72029 1.27191 1.14455 1.25501 1.21850 0.92508 0.88623 0.85779 1.20713 1.02977 0.94085 1.01978 1.21905 0.90312 1.00696 0.89285 1.21479 1.03828 0.90086 1.04328 1.22698 0.90671 1.03839 0.83820 1.44542 1.37122 1.05995 1.18852 1.44903 1.52376 1.08453 1.21927 0.68562 0.94055 0.93413 0.95857 0.94904 0.93822 0.92458 0.99758 1.00289 0.93014 0.93944 0.95603 0.82246 0.79012 0.77209 0.77483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.65 8.06 71.98 0.58 -4.07 16 2 C -0.05 -2.61 0.60 -52.18 -0.03 -2.64 16 3 C -0.10 -4.71 8.06 71.98 0.58 -4.13 16 4 C 0.04 2.71 4.04 29.84 0.12 2.84 16 5 C -0.52 -31.80 7.65 25.60 0.20 -31.60 16 6 H 0.06 3.80 5.68 -2.91 -0.02 3.79 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.09 16 8 N -0.94 -61.43 13.29 21.45 0.28 -61.15 16 9 Si 0.96 47.48 29.54 68.60 2.03 49.51 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 13 C 0.11 5.42 5.28 86.38 0.46 5.88 16 14 N -0.62 -26.72 9.14 -350.75 -3.21 -29.93 16 15 C 0.53 19.63 8.82 261.32 2.31 21.94 16 16 N -0.65 -24.33 10.15 -195.65 -1.99 -26.32 16 17 C 0.36 9.28 7.82 133.94 1.05 10.32 16 18 C -0.17 -2.67 10.11 22.42 0.23 -2.44 16 19 C 0.00 0.01 10.07 22.30 0.22 0.24 16 20 C -0.17 -0.12 10.00 22.07 0.22 0.10 16 21 C 0.12 0.68 11.18 83.44 0.93 1.61 16 22 N -0.29 -5.37 3.86 -192.69 -0.74 -6.11 16 23 N -0.53 -13.10 7.60 -59.53 -0.45 -13.55 16 24 H 0.46 8.31 8.96 -213.15 -1.91 6.40 16 25 H 0.04 1.85 7.60 -2.39 -0.02 1.83 16 26 H 0.05 2.34 6.62 -2.39 -0.02 2.32 16 27 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 2.08 6.62 -2.39 -0.02 2.07 16 30 H 0.06 2.47 7.60 -2.39 -0.02 2.45 16 31 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 32 H -0.02 -1.41 8.14 -2.38 -0.02 -1.43 16 33 H 0.26 16.00 8.31 -92.72 -0.77 15.23 16 34 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.03 1.34 7.02 -2.38 -0.02 1.33 16 36 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 37 H 0.19 -0.77 8.06 -2.91 -0.02 -0.80 16 38 H 0.21 -1.78 8.06 -2.91 -0.02 -1.81 16 39 H 0.21 -0.56 8.06 -2.91 -0.02 -0.58 16 Total: -1.00 -91.69 323.41 2.39 -89.30 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -0.85 Total: 0.12 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 7.32 Total: -1.87 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -6.10 Total: -137.06 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -91.69 2.39 -89.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596240930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.756 kcal (2) G-P(sol) polarization free energy of solvation -91.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds