Wall clock time and date at job start Mon Mar 30 2020 01:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47021 * 137.14209 * 3 2 1 5 5 N 1.46898 * 109.47000 * 176.48281 * 4 3 2 6 6 C 1.46909 * 110.99638 * 58.53509 * 5 4 3 7 7 C 1.50700 * 109.47308 * 66.04351 * 6 5 4 8 8 H 1.07997 * 119.99769 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99704 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00277 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99868 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46748 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47058 * 119.99769 * 11 9 7 14 14 H 1.48494 * 109.47089 * 239.99988 * 11 9 7 15 15 C 1.46899 * 111.00306 * 294.57977 * 5 4 3 16 16 C 1.50699 * 109.46638 * 287.94937 * 15 5 4 17 17 C 1.34567 * 126.58023 * 95.27914 * 16 15 5 18 18 N 1.34000 * 108.02928 * 179.97438 * 17 16 15 19 19 C 1.30909 * 109.30682 * 359.88883 * 18 17 16 20 20 N 1.34813 * 108.60358 * 0.20787 * 19 18 17 21 21 C 1.47013 * 111.17539 * 179.69172 * 20 19 18 22 22 C 1.54390 * 105.52491 * 17.14237 * 21 20 19 23 23 C 1.51561 * 141.45024 * 180.20870 * 19 18 17 24 24 H 1.08991 * 109.47354 * 17.13564 * 3 2 1 25 25 H 1.09004 * 109.46553 * 257.13741 * 3 2 1 26 26 H 1.09003 * 109.47178 * 56.48356 * 4 3 2 27 27 H 1.08993 * 109.46665 * 296.48617 * 4 3 2 28 28 H 1.09007 * 109.46798 * 186.04496 * 6 5 4 29 29 H 1.09003 * 109.46841 * 306.03943 * 6 5 4 30 30 H 0.96996 * 120.00414 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.47045 * 167.95401 * 15 5 4 32 32 H 1.08995 * 109.46928 * 47.95323 * 15 5 4 33 33 H 1.08004 * 125.98310 * 0.02562 * 17 16 15 34 34 H 1.09008 * 110.23245 * 136.14067 * 21 20 19 35 35 H 1.09002 * 110.23593 * 258.02345 * 21 20 19 36 36 H 1.09000 * 110.96397 * 216.14673 * 22 21 20 37 37 H 1.09005 * 110.97872 * 92.38926 * 22 21 20 38 38 H 1.08995 * 110.47655 * 282.16268 * 23 19 18 39 39 H 1.09010 * 110.47652 * 44.77751 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0583 -0.9812 5 7 4.5840 1.1174 -0.9195 6 6 5.1774 -0.1879 -1.2395 7 6 4.8925 -0.5298 -2.6793 8 1 4.3276 0.1543 -3.2951 9 6 5.3531 -1.7160 -3.2102 10 7 6.0414 -2.5487 -2.4603 11 14 5.0006 -2.1396 -4.9951 12 1 4.2142 -1.0445 -5.6176 13 1 6.2822 -2.3069 -5.7265 14 1 4.2249 -3.4041 -5.0599 15 6 5.0370 1.5938 0.3942 16 6 4.7431 3.0662 0.5232 17 6 3.6605 3.6204 1.0991 18 7 3.7784 4.9521 1.0082 19 6 4.8982 5.2468 0.3976 20 7 5.5277 4.0989 0.0760 21 6 6.7940 4.3651 -0.6218 22 6 7.1228 5.8453 -0.3309 23 6 5.7188 6.4338 -0.0658 24 1 2.9718 -0.9811 -0.3028 25 1 2.9712 0.2296 1.0019 26 1 2.7032 2.0307 -0.7148 27 1 2.8066 0.7956 -1.9923 28 1 6.2552 -0.1453 -1.0825 29 1 4.7458 -0.9515 -0.5924 30 1 6.3651 -3.3834 -2.8337 31 1 6.1099 1.4276 0.4908 32 1 4.5128 1.0484 1.1789 33 1 2.8407 3.0856 1.5555 34 1 7.5819 3.7205 -0.2321 35 1 6.6743 4.2074 -1.6936 36 1 7.5872 6.3189 -1.1959 37 1 7.7576 5.9382 0.5503 38 1 5.3012 6.8518 -0.9817 39 1 5.7650 7.1935 0.7147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597075523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:52 Heat of formation + Delta-G solvation = 101.513427 kcal Electronic energy + Delta-G solvation = -20961.385127 eV Core-core repulsion = 17905.491629 eV Total energy + Delta-G solvation = -3055.893497 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.25031 -37.92963 -36.28773 -35.86487 -32.83030 -31.97765 -30.45370 -29.27094 -27.73145 -26.50995 -24.96646 -23.37648 -22.13375 -20.60313 -20.09174 -19.18354 -17.43987 -16.69022 -16.36232 -15.70232 -15.22326 -14.69624 -14.51822 -14.20399 -14.00595 -13.81439 -13.47073 -13.42645 -13.27565 -12.80361 -12.28875 -12.20709 -12.04279 -11.95728 -11.72179 -11.53016 -11.35657 -11.24320 -11.15565 -10.80430 -10.70975 -10.25057 -10.04836 -9.62178 -9.37608 -9.27354 -8.56736 -7.98933 -7.46791 -6.15621 -4.17378 2.24728 2.93535 3.10960 3.14155 3.23920 3.32068 3.32994 3.37306 3.91788 4.30785 4.36545 4.38258 4.59519 4.69767 4.91229 5.10813 5.21302 5.32276 5.37648 5.39653 5.45404 5.47836 5.54317 5.67756 5.73475 5.76150 5.78551 5.99290 5.99623 6.26849 6.56966 6.71000 7.05915 7.06910 7.12362 7.26726 7.64173 7.82963 7.94001 7.98940 8.33498 8.34455 8.90600 9.48320 10.94665 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.005652 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.955129 B = 4952.516712 C = 6300.746389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.224 3.776 3 C -0.073 4.073 4 C 0.073 3.927 5 N -0.525 5.525 6 C 0.187 3.813 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.059 3.941 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.115 3.885 16 C 0.028 3.972 17 C -0.029 4.029 18 N -0.483 5.483 19 C 0.169 3.831 20 N -0.462 5.462 21 C 0.104 3.896 22 C -0.130 4.130 23 C -0.037 4.037 24 H 0.124 0.876 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.031 0.969 29 H 0.004 0.996 30 H 0.262 0.738 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.168 0.832 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.514 13.069 5.586 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.093 4.093 3 C -0.115 4.115 4 C -0.058 4.058 5 N -0.248 5.248 6 C 0.062 3.938 7 C -0.548 4.548 8 H 0.082 0.918 9 C -0.143 4.143 10 N -0.536 5.536 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.014 4.014 16 C -0.087 4.087 17 C -0.177 4.177 18 N -0.202 5.202 19 C -0.093 4.093 20 N -0.145 5.145 21 C -0.018 4.018 22 C -0.168 4.168 23 C -0.076 4.076 24 H 0.141 0.859 25 H 0.118 0.882 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.185 0.815 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.691 13.613 5.423 14.898 hybrid contribution 0.629 -1.743 -0.694 1.979 sum 3.320 11.869 4.729 13.201 Atomic orbital electron populations 1.81144 1.13181 1.09841 1.09647 1.29259 0.95255 0.92365 0.92447 1.20219 0.81550 1.06123 1.03580 1.22044 0.88687 0.95776 0.99271 1.62373 1.05722 1.31876 1.24788 1.19896 0.94887 0.82277 0.96720 1.21142 1.34625 1.03330 0.95696 0.91765 1.24942 0.95120 0.96260 0.97958 1.69939 1.36903 1.10657 1.36058 0.86498 0.78055 0.78380 0.84880 1.19650 1.21018 1.21041 1.20535 1.01041 0.87030 0.92801 1.21013 0.93506 0.90455 1.03732 1.21953 0.98949 0.89458 1.07356 1.69787 1.16338 1.14979 1.19135 1.24129 0.92796 0.89150 1.03234 1.46165 1.18553 1.07370 1.42445 1.22333 0.83979 0.97108 0.98390 1.22730 0.96819 0.93572 1.03654 1.20569 0.91652 0.93219 1.02158 0.85863 0.88243 0.91488 0.89140 0.95086 0.97860 0.92853 0.90493 0.92424 0.81518 0.89315 0.88785 0.88291 0.89747 0.88960 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.46 18.54 42.15 0.78 -7.68 16 2 C 0.22 3.65 15.43 -20.76 -0.32 3.33 16 3 C -0.07 -1.08 5.01 -29.52 -0.15 -1.23 16 4 C 0.07 1.22 4.96 -3.82 -0.02 1.20 16 5 N -0.52 -9.54 4.65 -237.51 -1.10 -10.64 16 6 C 0.19 4.11 4.44 -4.97 -0.02 4.09 16 7 C -0.51 -12.79 8.53 -34.44 -0.29 -13.09 16 8 H 0.06 1.64 7.10 -52.49 -0.37 1.26 16 9 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -24.49 13.29 55.43 0.74 -23.76 16 11 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.12 1.76 5.42 -4.98 -0.03 1.73 16 16 C 0.03 0.43 6.18 -81.49 -0.50 -0.07 16 17 C -0.03 -0.45 10.79 -17.90 -0.19 -0.64 16 18 N -0.48 -8.10 11.26 -10.56 -0.12 -8.22 16 19 C 0.17 2.42 8.58 -154.86 -1.33 1.09 16 20 N -0.46 -6.56 3.61 -107.73 -0.39 -6.94 16 21 C 0.10 1.08 7.78 -3.03 -0.02 1.06 16 22 C -0.13 -0.91 7.17 -25.20 -0.18 -1.09 16 23 C -0.04 -0.34 6.86 -26.66 -0.18 -0.52 16 24 H 0.12 2.02 6.45 -51.93 -0.33 1.69 16 25 H 0.10 1.24 6.17 -51.93 -0.32 0.92 16 26 H 0.07 1.09 6.58 -51.93 -0.34 0.75 16 27 H 0.09 1.70 6.90 -51.93 -0.36 1.34 16 28 H 0.03 0.75 7.86 -51.93 -0.41 0.34 16 29 H 0.00 0.08 6.03 -51.93 -0.31 -0.23 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.08 1.19 7.81 -51.93 -0.41 0.78 16 32 H 0.06 0.78 5.94 -51.93 -0.31 0.48 16 33 H 0.17 2.32 8.06 -52.48 -0.42 1.90 16 34 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -31.26 324.87 -8.82 -40.08 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.26 Total: -0.50 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -3.34 Total: -2.70 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.09 Total: -57.25 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.26 -8.82 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597075523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.591 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds