Wall clock time and date at job start Mon Mar 30 2020 01:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47021 * 137.14209 * 3 2 1 5 5 N 1.46898 * 109.47000 * 176.48281 * 4 3 2 6 6 C 1.46909 * 110.99638 * 58.53509 * 5 4 3 7 7 C 1.50700 * 109.47308 * 66.04351 * 6 5 4 8 8 H 1.07997 * 119.99769 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99704 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00277 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99868 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46748 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47058 * 119.99769 * 11 9 7 14 14 H 1.48494 * 109.47089 * 239.99988 * 11 9 7 15 15 C 1.46899 * 111.00306 * 294.57977 * 5 4 3 16 16 C 1.50699 * 109.46638 * 287.94937 * 15 5 4 17 17 C 1.34567 * 126.58023 * 95.27914 * 16 15 5 18 18 N 1.34000 * 108.02928 * 179.97438 * 17 16 15 19 19 C 1.30909 * 109.30682 * 359.88883 * 18 17 16 20 20 N 1.34813 * 108.60358 * 0.20787 * 19 18 17 21 21 C 1.47013 * 111.17539 * 179.69172 * 20 19 18 22 22 C 1.54390 * 105.52491 * 17.14237 * 21 20 19 23 23 C 1.51561 * 141.45024 * 180.20870 * 19 18 17 24 24 H 1.08991 * 109.47354 * 17.13564 * 3 2 1 25 25 H 1.09004 * 109.46553 * 257.13741 * 3 2 1 26 26 H 1.09003 * 109.47178 * 56.48356 * 4 3 2 27 27 H 1.08993 * 109.46665 * 296.48617 * 4 3 2 28 28 H 1.09007 * 109.46798 * 186.04496 * 6 5 4 29 29 H 1.09003 * 109.46841 * 306.03943 * 6 5 4 30 30 H 0.96996 * 120.00414 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.47045 * 167.95401 * 15 5 4 32 32 H 1.08995 * 109.46928 * 47.95323 * 15 5 4 33 33 H 1.08004 * 125.98310 * 0.02562 * 17 16 15 34 34 H 1.09008 * 110.23245 * 136.14067 * 21 20 19 35 35 H 1.09002 * 110.23593 * 258.02345 * 21 20 19 36 36 H 1.09000 * 110.96397 * 216.14673 * 22 21 20 37 37 H 1.09005 * 110.97872 * 92.38926 * 22 21 20 38 38 H 1.08995 * 110.47655 * 282.16268 * 23 19 18 39 39 H 1.09010 * 110.47652 * 44.77751 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0583 -0.9812 5 7 4.5840 1.1174 -0.9195 6 6 5.1774 -0.1879 -1.2395 7 6 4.8925 -0.5298 -2.6793 8 1 4.3276 0.1543 -3.2951 9 6 5.3531 -1.7160 -3.2102 10 7 6.0414 -2.5487 -2.4603 11 14 5.0006 -2.1396 -4.9951 12 1 4.2142 -1.0445 -5.6176 13 1 6.2822 -2.3069 -5.7265 14 1 4.2249 -3.4041 -5.0599 15 6 5.0370 1.5938 0.3942 16 6 4.7431 3.0662 0.5232 17 6 3.6605 3.6204 1.0991 18 7 3.7784 4.9521 1.0082 19 6 4.8982 5.2468 0.3976 20 7 5.5277 4.0989 0.0760 21 6 6.7940 4.3651 -0.6218 22 6 7.1228 5.8453 -0.3309 23 6 5.7188 6.4338 -0.0658 24 1 2.9718 -0.9811 -0.3028 25 1 2.9712 0.2296 1.0019 26 1 2.7032 2.0307 -0.7148 27 1 2.8066 0.7956 -1.9923 28 1 6.2552 -0.1453 -1.0825 29 1 4.7458 -0.9515 -0.5924 30 1 6.3651 -3.3834 -2.8337 31 1 6.1099 1.4276 0.4908 32 1 4.5128 1.0484 1.1789 33 1 2.8407 3.0856 1.5555 34 1 7.5819 3.7205 -0.2321 35 1 6.6743 4.2074 -1.6936 36 1 7.5872 6.3189 -1.1959 37 1 7.7576 5.9382 0.5503 38 1 5.3012 6.8518 -0.9817 39 1 5.7650 7.1935 0.7147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597075523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:40 Heat of formation + Delta-G solvation = 82.565791 kcal Electronic energy + Delta-G solvation = -20962.206758 eV Core-core repulsion = 17905.491629 eV Total energy + Delta-G solvation = -3056.715129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.30581 -39.34564 -37.40785 -37.05765 -34.73399 -33.11120 -31.73947 -30.57703 -28.80178 -27.93785 -26.24232 -25.04638 -22.94923 -21.96201 -21.21224 -20.31324 -18.84472 -18.26021 -17.52928 -17.04452 -16.51844 -16.29388 -15.83604 -15.38255 -15.23284 -15.01493 -14.65132 -14.57040 -14.32703 -14.07315 -13.65718 -13.54772 -13.41511 -13.05450 -12.97117 -12.89362 -12.75951 -12.57048 -12.43667 -12.35855 -11.90745 -11.86024 -11.58691 -11.27275 -10.76912 -10.55124 -10.37612 -9.16152 -8.91986 -8.15001 -6.21429 1.13528 1.41294 1.45712 1.55168 1.75768 1.79751 1.98310 2.18832 2.44021 3.00199 3.07534 3.19934 3.48400 3.62132 3.85162 3.99101 4.11115 4.13553 4.19962 4.38381 4.45111 4.53980 4.63320 4.69272 4.72614 4.79659 4.90207 4.95435 5.05868 5.16383 5.20053 5.35848 5.38523 5.58711 5.72403 5.97194 6.10769 6.23436 6.32529 6.57696 6.63523 6.94131 7.23438 7.47671 8.94613 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.005652 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.955129 B = 4952.516712 C = 6300.746389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.245 3.755 3 C -0.060 4.060 4 C 0.080 3.920 5 N -0.532 5.532 6 C 0.202 3.798 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.014 3.986 10 N -0.926 5.926 11 Si 0.948 3.052 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.284 1.284 15 C 0.122 3.878 16 C 0.012 3.988 17 C -0.038 4.038 18 N -0.524 5.524 19 C 0.166 3.834 20 N -0.470 5.470 21 C 0.091 3.909 22 C -0.111 4.111 23 C -0.038 4.038 24 H 0.112 0.888 25 H 0.131 0.869 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.009 0.991 29 H 0.000 1.000 30 H 0.262 0.738 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.177 0.823 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 14.455 5.579 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.072 4.072 3 C -0.101 4.101 4 C -0.051 4.051 5 N -0.255 5.255 6 C 0.077 3.923 7 C -0.553 4.553 8 H 0.074 0.926 9 C -0.185 4.185 10 N -0.567 5.567 11 Si 0.775 3.225 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.210 1.210 15 C -0.006 4.006 16 C -0.104 4.104 17 C -0.186 4.186 18 N -0.244 5.244 19 C -0.097 4.097 20 N -0.153 5.153 21 C -0.029 4.029 22 C -0.149 4.149 23 C -0.076 4.076 24 H 0.130 0.870 25 H 0.148 0.852 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.027 0.973 29 H 0.018 0.982 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.194 0.806 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.148 0.852 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.446 15.012 5.411 16.325 hybrid contribution 0.417 -2.092 -0.681 2.239 sum 3.864 12.920 4.730 14.291 Atomic orbital electron populations 1.81166 1.14206 1.10922 1.10915 1.29350 0.95215 0.91312 0.91321 1.20137 0.80537 1.04756 1.04679 1.21893 0.87934 0.96692 0.98539 1.62203 1.06363 1.29703 1.27193 1.19543 0.93656 0.83982 0.95163 1.21426 1.33706 1.02948 0.97172 0.92556 1.25595 0.95241 0.96455 1.01196 1.70023 1.38111 1.11091 1.37487 0.85644 0.77814 0.77956 0.81067 1.19464 1.20753 1.20971 1.20491 1.01020 0.87453 0.91685 1.20949 0.94134 0.90513 1.04802 1.22204 0.99377 0.89579 1.07432 1.69772 1.18100 1.15489 1.21035 1.25121 0.92134 0.90957 1.01521 1.46505 1.19529 1.07070 1.42239 1.22663 0.82717 0.99812 0.97732 1.22779 0.95857 0.90640 1.05609 1.20853 0.91845 0.91912 1.03038 0.86998 0.85162 0.90675 0.91448 0.97286 0.98218 0.92858 0.90809 0.90410 0.80583 0.88856 0.89433 0.85230 0.88341 0.87799 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.85 18.54 20.01 0.37 -17.47 16 2 C 0.24 7.75 15.43 89.44 1.38 9.13 16 3 C -0.06 -1.70 5.01 28.79 0.14 -1.56 16 4 C 0.08 2.63 4.96 86.31 0.43 3.06 16 5 N -0.53 -19.12 4.65 -905.34 -4.21 -23.33 16 6 C 0.20 8.93 4.44 85.56 0.38 9.31 16 7 C -0.51 -25.91 8.53 25.60 0.22 -25.70 16 8 H 0.06 2.88 7.10 -2.91 -0.02 2.86 16 9 C 0.01 0.72 5.46 84.65 0.46 1.18 16 10 N -0.93 -50.84 13.29 21.45 0.28 -50.55 16 11 Si 0.95 42.00 29.54 68.60 2.03 44.02 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 15 C 0.12 3.63 5.42 85.56 0.46 4.09 16 16 C 0.01 0.34 6.18 40.88 0.25 0.60 16 17 C -0.04 -1.15 10.79 83.52 0.90 -0.25 16 18 N -0.52 -17.18 11.26 -187.33 -2.11 -19.29 16 19 C 0.17 4.50 8.58 138.36 1.19 5.69 16 20 N -0.47 -12.79 3.61 -494.75 -1.78 -14.57 16 21 C 0.09 1.75 7.78 86.75 0.67 2.42 16 22 C -0.11 -1.19 7.17 31.59 0.23 -0.96 16 23 C -0.04 -0.58 6.86 30.64 0.21 -0.37 16 24 H 0.11 3.60 6.45 -2.39 -0.02 3.58 16 25 H 0.13 2.95 6.17 -2.38 -0.01 2.93 16 26 H 0.07 2.39 6.58 -2.39 -0.02 2.37 16 27 H 0.07 2.54 6.90 -2.39 -0.02 2.52 16 28 H 0.01 0.44 7.86 -2.38 -0.02 0.42 16 29 H 0.00 0.01 6.03 -2.39 -0.01 -0.01 16 30 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.07 2.23 7.81 -2.39 -0.02 2.22 16 32 H 0.08 1.97 5.94 -2.39 -0.01 1.96 16 33 H 0.18 4.75 8.06 -2.91 -0.02 4.73 16 34 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -67.38 324.87 2.57 -64.81 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.06 Total: 9.75 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 6.93 Total: 6.64 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -7.45 Total: -125.22 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -67.38 2.57 -64.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597075523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.375 kcal (2) G-P(sol) polarization free energy of solvation -67.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds