Wall clock time and date at job start Mon Mar 30 2020 01:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00591 * 2 1 4 4 C 1.52997 * 109.47420 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46813 * 65.00457 * 4 3 2 6 6 C 1.36941 * 120.00049 * 264.43223 * 5 4 3 7 7 H 1.07995 * 120.00213 * 146.16462 * 6 5 4 8 8 C 1.38818 * 119.99600 * 326.15868 * 6 5 4 9 9 N 1.31618 * 120.00188 * 337.63177 * 8 6 5 10 10 Si 1.86803 * 119.99621 * 157.63065 * 8 6 5 11 11 H 1.48498 * 109.47177 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46801 * 120.00314 * 10 8 6 13 13 H 1.48498 * 109.46998 * 239.99951 * 10 8 6 14 14 C 1.46497 * 120.00250 * 84.42991 * 5 4 3 15 15 C 1.50701 * 109.46963 * 89.99998 * 14 5 4 16 16 C 1.38831 * 119.66631 * 270.25136 * 15 14 5 17 17 C 1.36633 * 120.52839 * 180.25781 * 16 15 14 18 18 C 1.39630 * 119.76335 * 359.75062 * 17 16 15 19 19 C 1.46487 * 134.03544 * 180.02562 * 18 17 16 20 20 C 1.34239 * 106.99839 * 179.97438 * 19 18 17 21 21 N 1.36833 * 109.93055 * 359.97438 * 20 19 18 22 22 H 0.96997 * 125.06650 * 180.02562 * 21 20 19 23 23 C 1.37687 * 109.87042 * 359.97438 * 21 20 19 24 24 C 1.37750 * 119.67010 * 90.00593 * 15 14 5 25 25 H 1.08993 * 109.47580 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46822 * 300.00410 * 1 2 3 27 27 H 1.09008 * 109.46991 * 59.99378 * 1 2 3 28 28 H 1.09001 * 109.46834 * 60.00178 * 3 2 1 29 29 H 1.09000 * 109.47542 * 300.00349 * 3 2 1 30 30 H 1.09003 * 109.47389 * 305.00757 * 4 3 2 31 31 H 1.09003 * 109.47655 * 185.00160 * 4 3 2 32 32 H 0.96994 * 119.99748 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47185 * 330.00087 * 14 5 4 34 34 H 1.09001 * 109.47160 * 209.99992 * 14 5 4 35 35 H 1.08001 * 119.73689 * 359.97438 * 16 15 14 36 36 H 1.07996 * 120.11567 * 179.77049 * 17 16 15 37 37 H 1.07994 * 126.50154 * 0.02562 * 19 18 17 38 38 H 1.07996 * 125.03727 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.10760 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.2075 -0.7850 -1.3022 7 1 3.9966 -1.3350 -2.2074 8 6 4.7128 -1.4454 -0.1906 9 7 5.3726 -0.7746 0.7298 10 14 4.4562 -3.2859 -0.0011 11 1 3.6893 -3.8011 -1.1637 12 1 5.7751 -3.9657 0.0618 13 1 3.7009 -3.5543 1.2490 14 6 4.1708 1.3861 -2.4477 15 6 5.5919 1.8859 -2.4887 16 6 5.9137 3.0924 -1.8818 17 6 7.1955 3.5647 -1.9127 18 6 8.1910 2.8260 -2.5553 19 6 9.6258 3.0251 -2.7738 20 6 10.0678 1.9648 -3.4685 21 7 9.0335 1.1027 -3.7121 22 1 9.1079 0.2658 -4.1968 23 6 7.8714 1.5997 -3.1658 24 6 6.5595 1.1387 -3.1235 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.6887 1.8462 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.8508 0.5682 0.8426 31 1 3.9786 2.1763 0.0902 32 1 5.7253 -1.2360 1.5066 33 1 3.4877 2.2351 -2.4200 34 1 3.9704 0.7875 -3.3363 35 1 5.1440 3.6643 -1.3851 36 1 7.4377 4.5058 -1.4416 37 1 10.2161 3.8650 -2.4389 38 1 11.0884 1.8144 -3.7877 39 1 6.2998 0.1997 -3.5896 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600172571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:44 Heat of formation + Delta-G solvation = 19.641276 kcal Electronic energy + Delta-G solvation = -21158.170816 eV Core-core repulsion = 18066.434324 eV Total energy + Delta-G solvation = -3091.736491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.89609 -39.02333 -38.14341 -36.52958 -33.53003 -32.64899 -31.03114 -30.17863 -29.50347 -27.13457 -26.75703 -24.71790 -23.62069 -22.38722 -21.47385 -21.15228 -18.90835 -18.34927 -17.31968 -16.93424 -16.65614 -16.48629 -16.00211 -15.48238 -15.39110 -15.32326 -15.01890 -14.71903 -14.51113 -13.85709 -13.74345 -13.43092 -13.02932 -12.79891 -12.62340 -12.52898 -12.44444 -12.29769 -12.22036 -11.87432 -11.82212 -11.53263 -11.47956 -10.45184 -10.43679 -10.31172 -8.92254 -8.56558 -8.37789 -7.74373 -5.25697 0.43051 0.89501 1.43641 1.48505 1.56433 1.97740 2.42842 2.57339 3.12882 3.23628 3.39217 3.88709 3.97347 4.16087 4.30219 4.41222 4.45754 4.56897 4.58698 4.64676 4.66512 4.74727 4.77241 4.84036 4.89701 4.96515 5.03921 5.07248 5.15871 5.27618 5.36399 5.72843 5.76318 5.86260 5.90680 6.00348 6.08109 6.45395 6.48694 6.68531 6.85224 7.25291 7.95276 8.44446 9.24039 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.005899 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.090871 B = 4745.638087 C = 5689.927180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.055 3.945 4 C 0.142 3.858 5 N -0.576 5.576 6 C -0.230 4.230 7 H 0.050 0.950 8 C -0.032 4.032 9 N -0.915 5.915 10 Si 0.945 3.055 11 H -0.271 1.271 12 H -0.298 1.298 13 H -0.294 1.294 14 C 0.179 3.821 15 C -0.073 4.073 16 C -0.143 4.143 17 C -0.090 4.090 18 C -0.144 4.144 19 C -0.230 4.230 20 C 0.055 3.945 21 N -0.597 5.597 22 H 0.423 0.577 23 C 0.074 3.926 24 C -0.130 4.130 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.245 0.755 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.124 0.876 36 H 0.135 0.865 37 H 0.163 0.837 38 H 0.211 0.789 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 7.761 -6.861 10.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.023 4.023 4 C 0.016 3.984 5 N -0.295 5.295 6 C -0.361 4.361 7 H 0.068 0.932 8 C -0.228 4.228 9 N -0.560 5.560 10 Si 0.776 3.224 11 H -0.196 1.196 12 H -0.225 1.225 13 H -0.221 1.221 14 C 0.054 3.946 15 C -0.078 4.078 16 C -0.163 4.163 17 C -0.108 4.108 18 C -0.149 4.149 19 C -0.255 4.255 20 C -0.071 4.071 21 N -0.201 5.201 22 H 0.261 0.739 23 C -0.033 4.033 24 C -0.152 4.152 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.180 0.820 38 H 0.228 0.772 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.434 7.416 -6.804 10.355 hybrid contribution -0.266 -1.361 0.305 1.420 sum 2.168 6.055 -6.499 9.143 Atomic orbital electron populations 1.22826 0.81474 1.02658 1.00104 1.88116 1.19722 1.28878 1.95213 1.23221 0.96544 0.83952 0.98627 1.20951 0.89553 0.96459 0.91483 1.43957 1.74957 1.03511 1.07075 1.19044 1.34158 0.84001 0.98907 0.93246 1.25504 0.97507 1.00340 0.99472 1.70126 1.37338 1.35977 1.12593 0.85551 0.76589 0.82792 0.77513 1.19584 1.22536 1.22131 1.20059 0.89945 0.94099 0.90487 1.20670 0.98357 0.93608 0.95135 1.20629 0.96902 0.96787 1.01935 1.20424 0.91772 0.99810 0.98799 1.19599 0.95586 0.95908 1.03839 1.21962 0.92061 1.02575 1.08923 1.22429 0.93909 0.90253 1.00498 1.41877 1.06099 1.22161 1.49961 0.73936 1.18450 0.88494 0.95953 1.00426 1.19858 0.90199 1.00009 1.05128 0.89927 0.93562 0.93729 0.93384 0.93886 0.91182 0.93489 0.94606 0.91608 0.93347 0.85842 0.84698 0.81953 0.77206 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -17.32 10.44 -148.98 -1.56 -18.88 16 3 C 0.06 2.17 6.28 71.98 0.45 2.62 16 4 C 0.14 6.69 5.63 86.38 0.49 7.17 16 5 N -0.58 -28.43 2.39 -706.34 -1.69 -30.12 16 6 C -0.23 -12.76 9.28 84.03 0.78 -11.98 16 7 H 0.05 2.78 7.92 -2.91 -0.02 2.76 16 8 C -0.03 -1.82 4.91 84.86 0.42 -1.40 16 9 N -0.91 -54.96 11.35 21.65 0.25 -54.71 16 10 Si 0.95 47.04 29.61 68.60 2.03 49.07 16 11 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 13 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 14 C 0.18 7.54 5.79 85.63 0.50 8.04 16 15 C -0.07 -3.07 5.46 -19.84 -0.11 -3.18 16 16 C -0.14 -5.46 9.62 22.04 0.21 -5.25 16 17 C -0.09 -3.20 10.05 22.23 0.22 -2.98 16 18 C -0.14 -5.24 6.37 -20.20 -0.13 -5.37 16 19 C -0.23 -6.49 11.08 23.51 0.26 -6.23 16 20 C 0.06 1.31 11.82 83.00 0.98 2.29 16 21 N -0.60 -17.15 6.07 -187.61 -1.14 -18.29 16 22 H 0.42 9.70 8.96 -92.71 -0.83 8.87 16 23 C 0.07 2.78 7.28 39.03 0.28 3.07 16 24 C -0.13 -5.44 9.71 22.37 0.22 -5.22 16 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 30 H 0.07 3.92 5.34 -2.39 -0.01 3.90 16 31 H 0.05 2.08 8.10 -2.39 -0.02 2.06 16 32 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.07 2.42 7.99 -2.39 -0.02 2.40 16 34 H 0.05 2.01 7.97 -2.39 -0.02 1.99 16 35 H 0.12 4.23 8.05 -2.91 -0.02 4.21 16 36 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.21 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -71.27 331.04 3.92 -67.35 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.21 Total: 21.94 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 5.82 Total: -16.37 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -2.58 Total: -103.12 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -1.56 Total: -18.88 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -71.27 3.92 -67.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600172571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.988 kcal (2) G-P(sol) polarization free energy of solvation -71.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds