Wall clock time and date at job start Mon Mar 30 2020 01:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00281 * 2 1 4 4 C 1.52995 * 109.47317 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47039 * 65.00277 * 4 3 2 6 6 C 1.36938 * 120.00181 * 270.00345 * 5 4 3 7 7 H 1.07997 * 120.00225 * 142.48718 * 6 5 4 8 8 C 1.38814 * 119.99803 * 322.48461 * 6 5 4 9 9 N 1.31623 * 119.99806 * 158.12630 * 8 6 5 10 10 Si 1.86804 * 120.00097 * 338.12629 * 8 6 5 11 11 H 1.48499 * 109.46819 * 95.30829 * 10 8 6 12 12 H 1.48500 * 109.46933 * 215.31074 * 10 8 6 13 13 H 1.48500 * 109.46990 * 335.31010 * 10 8 6 14 14 C 1.46507 * 119.99681 * 89.99969 * 5 4 3 15 15 C 1.50701 * 109.46853 * 94.37874 * 14 5 4 16 16 C 1.38829 * 119.74091 * 85.51438 * 15 14 5 17 17 C 1.37746 * 120.67080 * 179.97438 * 16 15 14 18 18 C 1.39122 * 119.77652 * 359.97438 * 17 16 15 19 19 N 1.37687 * 133.50962 * 179.97438 * 18 17 16 20 20 H 0.96998 * 125.06450 * 359.97438 * 19 18 17 21 21 C 1.36836 * 109.87551 * 180.26156 * 19 18 17 22 22 C 1.34233 * 109.92881 * 359.55512 * 21 19 18 23 23 C 1.40670 * 119.33336 * 359.97438 * 18 17 16 24 24 C 1.36628 * 119.73209 * 265.48853 * 15 14 5 25 25 H 1.09000 * 109.47054 * 299.99637 * 1 2 3 26 26 H 1.09001 * 109.47165 * 59.98991 * 1 2 3 27 27 H 1.08999 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46703 * 60.00609 * 3 2 1 29 29 H 1.08995 * 109.47393 * 300.00660 * 3 2 1 30 30 H 1.09001 * 109.47239 * 305.00655 * 4 3 2 31 31 H 1.08999 * 109.47661 * 185.00114 * 4 3 2 32 32 H 0.96998 * 119.99775 * 180.02562 * 9 8 6 33 33 H 1.08993 * 109.47131 * 334.37311 * 14 5 4 34 34 H 1.09005 * 109.46865 * 214.37130 * 14 5 4 35 35 H 1.08000 * 119.66525 * 359.97438 * 16 15 14 36 36 H 1.07996 * 120.11175 * 179.97438 * 17 16 15 37 37 H 1.08002 * 125.03287 * 179.71139 * 21 19 18 38 38 H 1.08004 * 126.50162 * 180.15204 * 22 21 19 39 39 H 1.08001 * 120.11746 * 0.04704 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0966 -0.7970 -1.3371 7 1 3.8222 -1.3082 -2.2480 8 6 4.5721 -1.5201 -0.2517 9 7 4.2993 -2.8033 -0.1454 10 14 5.5990 -0.6718 1.0581 11 1 4.7217 -0.2536 2.1809 12 1 6.6333 -1.6111 1.5613 13 1 6.2581 0.5234 0.4732 14 6 4.2863 1.4008 -2.4148 15 6 5.7646 1.6921 -2.4432 16 6 6.6334 0.7880 -3.0390 17 6 7.9880 1.0352 -3.0761 18 6 8.4930 2.2024 -2.5120 19 7 9.7611 2.7247 -2.3900 20 1 10.5712 2.3033 -2.7173 21 6 9.7092 3.9235 -1.7325 22 6 8.4376 4.2198 -1.4209 23 6 7.6084 3.1158 -1.9105 24 6 6.2390 2.8443 -1.8827 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6887 1.8462 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5680 0.8409 31 1 3.9786 2.1764 0.0889 32 1 4.6312 -3.3085 0.6132 33 1 3.7326 2.3371 -2.3470 34 1 4.0020 0.8757 -3.3268 35 1 6.2433 -0.1185 -3.4778 36 1 8.6558 0.3255 -3.5416 37 1 10.5644 4.5412 -1.5009 38 1 8.0919 5.1023 -0.9031 39 1 5.5572 3.5429 -1.4206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600172702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:41 Heat of formation + Delta-G solvation = 46.807897 kcal Electronic energy + Delta-G solvation = -21280.650254 eV Core-core repulsion = 18190.091796 eV Total energy + Delta-G solvation = -3090.558458 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.78409 -37.60579 -36.79036 -34.93213 -31.71776 -31.38822 -30.24805 -28.45992 -28.16134 -25.64467 -25.43462 -22.94999 -22.04568 -21.29520 -20.55042 -19.54621 -17.64368 -16.66625 -15.93854 -15.68661 -15.39258 -14.74856 -14.34609 -14.16170 -14.09228 -13.82183 -13.64697 -13.27928 -12.89149 -12.69242 -12.33119 -12.14653 -11.85957 -11.52773 -11.22011 -11.06011 -10.80079 -10.67538 -10.50392 -10.36373 -10.11713 -9.67120 -9.42138 -9.33708 -8.82837 -8.34658 -7.63543 -7.30236 -6.72705 -5.81104 -3.20291 1.62280 2.18068 3.03614 3.41142 3.44054 3.59102 3.69717 4.41429 4.64098 4.70491 5.01693 5.17142 5.19948 5.50166 5.57424 5.69761 5.72760 5.79420 5.84125 5.87269 6.00864 6.01224 6.07564 6.16270 6.19784 6.22570 6.35462 6.35792 6.42680 6.61090 6.70059 6.82625 6.98806 7.11244 7.16724 7.43603 7.68385 7.81001 8.02997 8.22762 8.53449 9.10577 9.88711 10.24924 11.34811 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.005966 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.339698 B = 4692.126994 C = 5116.460979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.347 6.347 3 C 0.048 3.952 4 C 0.135 3.865 5 N -0.589 5.589 6 C -0.245 4.245 7 H 0.077 0.923 8 C 0.046 3.954 9 N -0.899 5.899 10 Si 0.866 3.134 11 H -0.289 1.289 12 H -0.307 1.307 13 H -0.263 1.263 14 C 0.184 3.816 15 C -0.103 4.103 16 C -0.063 4.063 17 C -0.142 4.142 18 C 0.083 3.917 19 N -0.602 5.602 20 H 0.409 0.591 21 C 0.036 3.964 22 C -0.207 4.207 23 C -0.113 4.113 24 C -0.077 4.077 25 H 0.025 0.975 26 H 0.029 0.971 27 H 0.078 0.922 28 H 0.027 0.973 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.259 0.741 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.162 0.838 38 H 0.139 0.861 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.731 12.973 -3.561 14.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C -0.031 4.031 4 C 0.009 3.991 5 N -0.309 5.309 6 C -0.373 4.373 7 H 0.095 0.905 8 C -0.154 4.154 9 N -0.540 5.540 10 Si 0.697 3.303 11 H -0.217 1.217 12 H -0.235 1.235 13 H -0.187 1.187 14 C 0.058 3.942 15 C -0.107 4.107 16 C -0.083 4.083 17 C -0.163 4.163 18 C -0.022 4.022 19 N -0.206 5.206 20 H 0.245 0.755 21 C -0.090 4.090 22 C -0.233 4.233 23 C -0.117 4.117 24 C -0.097 4.097 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.130 0.870 37 H 0.180 0.820 38 H 0.157 0.843 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.950 12.595 -3.516 13.982 hybrid contribution 0.938 0.402 0.980 1.415 sum 5.888 12.997 -2.536 14.492 Atomic orbital electron populations 1.22638 0.83881 1.01828 0.98229 1.88308 1.16845 1.26527 1.94783 1.23245 0.97302 0.85052 0.97551 1.21276 0.90265 0.96633 0.90926 1.44131 1.74938 1.03497 1.08366 1.18575 1.37299 0.79513 1.01957 0.90546 1.25311 0.97661 0.94708 0.97733 1.69864 1.45579 1.07949 1.30656 0.87093 0.81024 0.79886 0.82292 1.21743 1.23503 1.18721 1.19973 0.87965 0.94170 0.92090 1.20507 0.99341 0.93252 0.97565 1.20812 0.91434 0.98456 0.97556 1.19993 0.95885 0.95423 1.04991 1.18237 0.84195 0.96684 1.03127 1.41703 1.07159 1.19382 1.52357 0.75484 1.21632 0.98615 0.88602 1.00175 1.21639 0.91975 1.00506 1.09201 1.19163 0.93404 0.95622 1.03519 1.20069 0.92554 0.97314 0.99783 0.95663 0.95231 0.90365 0.95446 0.94441 0.92148 0.92790 0.93118 0.93409 0.92304 0.85366 0.86998 0.82025 0.84298 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.35 -7.84 10.18 -35.23 -0.36 -8.20 16 3 C 0.05 0.94 6.28 37.16 0.23 1.18 16 4 C 0.13 2.97 4.91 -4.04 -0.02 2.95 16 5 N -0.59 -13.80 2.05 -174.61 -0.36 -14.16 16 6 C -0.24 -6.78 9.42 -15.06 -0.14 -6.92 16 7 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 8 C 0.05 1.36 5.31 -17.43 -0.09 1.26 16 9 N -0.90 -28.08 13.97 55.49 0.78 -27.30 16 10 Si 0.87 23.26 25.01 -169.99 -4.25 19.01 16 11 H -0.29 -7.64 6.67 56.52 0.38 -7.26 16 12 H -0.31 -8.45 7.11 56.52 0.40 -8.04 16 13 H -0.26 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.18 3.61 5.78 -5.19 -0.03 3.58 16 15 C -0.10 -2.00 5.40 -104.98 -0.57 -2.57 16 16 C -0.06 -1.21 9.68 -39.54 -0.38 -1.59 16 17 C -0.14 -2.48 10.08 -39.43 -0.40 -2.88 16 18 C 0.08 1.42 7.28 -83.99 -0.61 0.81 16 19 N -0.60 -7.98 6.07 -10.65 -0.06 -8.04 16 20 H 0.41 4.02 8.96 -40.82 -0.37 3.66 16 21 C 0.04 0.44 11.82 -16.73 -0.20 0.24 16 22 C -0.21 -3.02 11.08 -37.67 -0.42 -3.44 16 23 C -0.11 -2.01 6.37 -105.14 -0.67 -2.68 16 24 C -0.08 -1.43 9.66 -39.64 -0.38 -1.81 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.51 3.22 -51.93 -0.17 1.34 16 31 H 0.05 1.04 8.07 -51.93 -0.42 0.63 16 32 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 33 H 0.05 0.82 7.94 -51.93 -0.41 0.41 16 34 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 35 H 0.13 2.46 8.06 -52.49 -0.42 2.03 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.11 1.85 8.05 -52.49 -0.42 1.42 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -34.41 325.84 -7.51 -41.92 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.59 Total: 2.09 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.56 Total: -10.22 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.35 Total: -49.50 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.36 Total: -8.20 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.25 Total: 19.01 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.41 -7.51 -41.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600172702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.725 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds