Wall clock time and date at job start Mon Mar 30 2020 01:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00281 * 2 1 4 4 C 1.52995 * 109.47317 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47039 * 65.00277 * 4 3 2 6 6 C 1.36938 * 120.00181 * 270.00345 * 5 4 3 7 7 H 1.07997 * 120.00225 * 142.48718 * 6 5 4 8 8 C 1.38814 * 119.99803 * 322.48461 * 6 5 4 9 9 N 1.31623 * 119.99806 * 158.12630 * 8 6 5 10 10 Si 1.86804 * 120.00097 * 338.12629 * 8 6 5 11 11 H 1.48499 * 109.46819 * 95.30829 * 10 8 6 12 12 H 1.48500 * 109.46933 * 215.31074 * 10 8 6 13 13 H 1.48500 * 109.46990 * 335.31010 * 10 8 6 14 14 C 1.46507 * 119.99681 * 89.99969 * 5 4 3 15 15 C 1.50701 * 109.46853 * 94.37874 * 14 5 4 16 16 C 1.38829 * 119.74091 * 85.51438 * 15 14 5 17 17 C 1.37746 * 120.67080 * 179.97438 * 16 15 14 18 18 C 1.39122 * 119.77652 * 359.97438 * 17 16 15 19 19 N 1.37687 * 133.50962 * 179.97438 * 18 17 16 20 20 H 0.96998 * 125.06450 * 359.97438 * 19 18 17 21 21 C 1.36836 * 109.87551 * 180.26156 * 19 18 17 22 22 C 1.34233 * 109.92881 * 359.55512 * 21 19 18 23 23 C 1.40670 * 119.33336 * 359.97438 * 18 17 16 24 24 C 1.36628 * 119.73209 * 265.48853 * 15 14 5 25 25 H 1.09000 * 109.47054 * 299.99637 * 1 2 3 26 26 H 1.09001 * 109.47165 * 59.98991 * 1 2 3 27 27 H 1.08999 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46703 * 60.00609 * 3 2 1 29 29 H 1.08995 * 109.47393 * 300.00660 * 3 2 1 30 30 H 1.09001 * 109.47239 * 305.00655 * 4 3 2 31 31 H 1.08999 * 109.47661 * 185.00114 * 4 3 2 32 32 H 0.96998 * 119.99775 * 180.02562 * 9 8 6 33 33 H 1.08993 * 109.47131 * 334.37311 * 14 5 4 34 34 H 1.09005 * 109.46865 * 214.37130 * 14 5 4 35 35 H 1.08000 * 119.66525 * 359.97438 * 16 15 14 36 36 H 1.07996 * 120.11175 * 179.97438 * 17 16 15 37 37 H 1.08002 * 125.03287 * 179.71139 * 21 19 18 38 38 H 1.08004 * 126.50162 * 180.15204 * 22 21 19 39 39 H 1.08001 * 120.11746 * 0.04704 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0966 -0.7970 -1.3371 7 1 3.8222 -1.3082 -2.2480 8 6 4.5721 -1.5201 -0.2517 9 7 4.2993 -2.8033 -0.1454 10 14 5.5990 -0.6718 1.0581 11 1 4.7217 -0.2536 2.1809 12 1 6.6333 -1.6111 1.5613 13 1 6.2581 0.5234 0.4732 14 6 4.2863 1.4008 -2.4148 15 6 5.7646 1.6921 -2.4432 16 6 6.6334 0.7880 -3.0390 17 6 7.9880 1.0352 -3.0761 18 6 8.4930 2.2024 -2.5120 19 7 9.7611 2.7247 -2.3900 20 1 10.5712 2.3033 -2.7173 21 6 9.7092 3.9235 -1.7325 22 6 8.4376 4.2198 -1.4209 23 6 7.6084 3.1158 -1.9105 24 6 6.2390 2.8443 -1.8827 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6887 1.8462 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5680 0.8409 31 1 3.9786 2.1764 0.0889 32 1 4.6312 -3.3085 0.6132 33 1 3.7326 2.3371 -2.3470 34 1 4.0020 0.8757 -3.3268 35 1 6.2433 -0.1185 -3.4778 36 1 8.6558 0.3255 -3.5416 37 1 10.5644 4.5412 -1.5009 38 1 8.0919 5.1023 -0.9031 39 1 5.5572 3.5429 -1.4206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600172702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:40 Heat of formation + Delta-G solvation = 24.117424 kcal Electronic energy + Delta-G solvation = -21281.634187 eV Core-core repulsion = 18190.091796 eV Total energy + Delta-G solvation = -3091.542391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96467 -39.18509 -38.22603 -36.60881 -33.70392 -32.75434 -31.70133 -29.98668 -29.45966 -27.18311 -27.05453 -24.64389 -23.40490 -22.90804 -21.76752 -20.95624 -18.82698 -18.68650 -17.61323 -17.07708 -16.94248 -16.37645 -15.91690 -15.67659 -15.58487 -15.20095 -15.03796 -14.65803 -14.56131 -14.28667 -13.90635 -13.58289 -13.34762 -12.99068 -12.95563 -12.61283 -12.40046 -12.27889 -12.17342 -12.00442 -11.66144 -11.58746 -11.39120 -10.59455 -10.51888 -10.31590 -8.96069 -8.67071 -8.50430 -8.06050 -5.39334 0.34864 0.80515 1.29413 1.40521 1.53794 1.93221 2.37354 2.50776 2.99257 3.17322 3.22487 3.67819 3.89832 4.10216 4.25244 4.36150 4.42044 4.44481 4.49723 4.58028 4.61221 4.63857 4.68175 4.69455 4.73573 4.91046 4.93820 5.03711 5.05577 5.16463 5.21923 5.32761 5.63489 5.88223 5.92946 5.97881 6.10141 6.28536 6.38712 6.62544 6.82914 7.11003 7.76560 8.16627 9.14766 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.005966 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.339698 B = 4692.126994 C = 5116.460979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.050 3.950 4 C 0.127 3.873 5 N -0.599 5.599 6 C -0.212 4.212 7 H 0.040 0.960 8 C -0.009 4.009 9 N -0.951 5.951 10 Si 0.929 3.071 11 H -0.284 1.284 12 H -0.322 1.322 13 H -0.261 1.261 14 C 0.186 3.814 15 C -0.120 4.120 16 C -0.093 4.093 17 C -0.143 4.143 18 C 0.066 3.934 19 N -0.592 5.592 20 H 0.427 0.573 21 C 0.063 3.937 22 C -0.235 4.235 23 C -0.135 4.135 24 C -0.085 4.085 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.084 0.916 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.213 0.787 38 H 0.160 0.840 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 16.507 -3.064 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.029 4.029 4 C 0.002 3.998 5 N -0.320 5.320 6 C -0.342 4.342 7 H 0.058 0.942 8 C -0.204 4.204 9 N -0.596 5.596 10 Si 0.760 3.240 11 H -0.212 1.212 12 H -0.251 1.251 13 H -0.185 1.185 14 C 0.062 3.938 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.164 4.164 18 C -0.041 4.041 19 N -0.197 5.197 20 H 0.266 0.734 21 C -0.063 4.063 22 C -0.260 4.260 23 C -0.140 4.140 24 C -0.105 4.105 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.130 0.870 36 H 0.148 0.852 37 H 0.230 0.770 38 H 0.177 0.823 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.365 16.188 -3.037 17.658 hybrid contribution 0.555 -0.548 0.696 1.046 sum 6.920 15.640 -2.341 17.262 Atomic orbital electron populations 1.22790 0.81338 1.02426 1.00215 1.88223 1.19875 1.28539 1.95241 1.23211 0.95360 0.84488 0.99806 1.21403 0.92390 0.97210 0.88834 1.44181 1.75681 1.02291 1.09878 1.18371 1.34237 0.81683 0.99913 0.94233 1.25761 0.99517 0.95070 1.00045 1.69986 1.48257 1.09555 1.31829 0.86083 0.79174 0.78315 0.80392 1.21203 1.25139 1.18530 1.20007 0.89033 0.94611 0.90156 1.20401 0.98696 0.94269 0.99010 1.20819 0.92700 0.98494 0.99318 1.20166 0.95485 0.96177 1.04551 1.18368 0.85986 0.96540 1.03249 1.41818 1.06588 1.19603 1.51703 0.73449 1.22441 0.99516 0.87543 0.96844 1.21982 0.92388 1.00827 1.10814 1.19650 0.93572 0.97098 1.03665 1.20263 0.93579 0.97108 0.99518 0.93155 0.93555 0.90647 0.92441 0.92636 0.95168 0.89757 0.93650 0.90346 0.93105 0.86983 0.85151 0.77005 0.82268 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 11.01 113.37 1.25 2.19 16 2 O -0.40 -17.82 10.18 -148.98 -1.52 -19.34 16 3 C 0.05 1.85 6.28 71.98 0.45 2.30 16 4 C 0.13 5.38 4.91 86.38 0.42 5.81 16 5 N -0.60 -28.01 2.05 -706.33 -1.45 -29.46 16 6 C -0.21 -12.12 9.42 84.03 0.79 -11.33 16 7 H 0.04 2.53 8.06 -2.91 -0.02 2.50 16 8 C -0.01 -0.52 5.31 84.86 0.45 -0.07 16 9 N -0.95 -62.02 13.97 21.65 0.30 -61.71 16 10 Si 0.93 49.75 25.01 68.60 1.72 51.47 16 11 H -0.28 -14.74 6.67 99.48 0.66 -14.08 16 12 H -0.32 -17.75 7.11 99.48 0.71 -17.04 16 13 H -0.26 -13.68 7.11 99.48 0.71 -12.98 16 14 C 0.19 7.25 5.78 85.63 0.50 7.75 16 15 C -0.12 -4.64 5.40 -20.10 -0.11 -4.75 16 16 C -0.09 -3.67 9.68 22.29 0.22 -3.45 16 17 C -0.14 -4.93 10.08 22.37 0.23 -4.70 16 18 C 0.07 2.11 7.28 39.03 0.28 2.39 16 19 N -0.59 -13.47 6.07 -187.61 -1.14 -14.61 16 20 H 0.43 6.71 8.96 -92.71 -0.83 5.88 16 21 C 0.06 1.23 11.82 83.00 0.98 2.21 16 22 C -0.24 -5.96 11.08 23.51 0.26 -5.70 16 23 C -0.14 -4.51 6.37 -20.20 -0.13 -4.64 16 24 C -0.09 -3.00 9.66 22.23 0.21 -2.79 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.03 1.48 3.22 -2.39 -0.01 1.48 16 31 H 0.08 3.02 8.07 -2.39 -0.02 3.00 16 32 H 0.25 15.99 8.31 -92.71 -0.77 15.22 16 33 H 0.08 2.53 7.94 -2.39 -0.02 2.51 16 34 H 0.05 2.02 8.04 -2.38 -0.02 2.00 16 35 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 37 H 0.21 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 39 H 0.13 3.90 8.05 -2.91 -0.02 3.88 16 Total: -1.00 -77.81 325.84 3.89 -73.92 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.17 Total: 14.51 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 5.81 Total: -14.77 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -2.29 Total: -105.79 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.52 Total: -19.34 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 1.72 Total: 51.47 kcal Total: -77.81 3.89 -73.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600172702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.040 kcal (2) G-P(sol) polarization free energy of solvation -77.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds