Wall clock time and date at job start Mon Mar 30 2020 01:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46496 * 109.47484 * 295.00296 * 13 2 1 15 15 C 1.39886 * 120.00344 * 180.02562 * 14 13 2 16 16 C 1.39524 * 119.80218 * 359.71692 * 15 14 13 17 17 C 1.36618 * 120.64467 * 179.73416 * 16 15 14 18 18 C 1.38942 * 119.97712 * 0.57037 * 17 16 15 19 19 C 1.40753 * 119.93612 * 359.69225 * 18 17 16 20 20 C 1.38144 * 119.80595 * 180.02562 * 15 14 13 21 21 N 1.34830 * 105.64375 * 180.02562 * 19 18 17 22 22 N 1.28660 * 109.25061 * 0.02562 * 21 19 18 23 23 N 1.28818 * 111.76001 * 0.02562 * 22 21 19 24 24 C 1.46498 * 125.92607 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 0.97005 * 119.99584 * 359.97438 * 14 13 2 34 34 H 1.07995 * 119.67719 * 0.02562 * 16 15 14 35 35 H 1.07998 * 120.00774 * 180.26125 * 17 16 15 36 36 H 1.07999 * 120.26244 * 359.94675 * 20 15 14 37 37 H 1.09003 * 109.47314 * 90.02208 * 24 23 22 38 38 H 1.09000 * 109.47093 * 210.01579 * 24 23 22 39 39 H 1.08997 * 109.47305 * 330.02130 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6523 0.0353 2.4424 15 6 2.0093 -0.4301 3.7123 16 6 2.7294 -1.6185 3.8382 17 6 3.0917 -2.0860 5.0697 18 6 2.7326 -1.3824 6.2127 19 6 2.0014 -0.1850 6.0996 20 6 1.6412 0.2863 4.8347 21 7 1.8142 0.2474 7.3630 22 7 2.3638 -0.5803 8.1804 23 7 2.9227 -1.5624 7.5619 24 6 3.6363 -2.6781 8.1880 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 1.8938 -0.0449 -5.6799 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.1487 0.8594 2.3517 34 1 3.0072 -2.1716 2.9533 35 1 3.6527 -3.0049 5.1550 36 1 1.0802 1.2037 4.7350 37 1 2.9358 -3.4872 8.3949 38 1 4.4150 -3.0354 7.5141 39 1 4.0891 -2.3422 9.1209 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602698693.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:02 Heat of formation + Delta-G solvation = 104.935333 kcal Electronic energy + Delta-G solvation = -20034.587220 eV Core-core repulsion = 16978.842107 eV Total energy + Delta-G solvation = -3055.745112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.07718 -38.88009 -36.47465 -34.90821 -33.83703 -32.11748 -30.66499 -29.28836 -28.03129 -27.44871 -25.82503 -23.93586 -22.93969 -21.82559 -21.11831 -19.40356 -18.08418 -17.53026 -17.02724 -16.73132 -16.20354 -15.24202 -14.79336 -14.43237 -14.22390 -13.97421 -13.78469 -13.42054 -13.25610 -12.98427 -12.76755 -12.41726 -12.13797 -12.05008 -11.78592 -11.77921 -11.14070 -10.97425 -10.81435 -10.67091 -10.57537 -10.09018 -9.84169 -9.77400 -9.65747 -9.18380 -8.60029 -8.59225 -7.30489 -6.09352 -4.07603 0.57441 1.43845 2.12133 2.34768 3.25820 3.34010 3.35543 3.44434 3.67186 4.03939 4.27009 4.39682 4.64229 4.68254 4.89322 4.92263 5.03891 5.16046 5.23405 5.25737 5.34960 5.49215 5.72887 5.85083 5.94410 6.03765 6.15109 6.18631 6.20406 6.26810 6.38464 6.54057 6.64276 6.77144 6.95633 7.13933 7.29476 7.36048 7.72385 7.79286 8.34536 8.47577 8.95164 9.52589 11.03873 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.039056 B = 0.003097 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.754645 B = 9039.419118 C = 9627.384559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.121 3.879 14 N -0.735 5.735 15 C 0.229 3.771 16 C -0.140 4.140 17 C -0.059 4.059 18 C -0.031 4.031 19 C 0.062 3.938 20 C -0.164 4.164 21 N -0.272 5.272 22 N -0.030 5.030 23 N -0.320 5.320 24 C 0.091 3.909 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.017 0.983 29 H 0.014 0.986 30 H 0.263 0.737 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.403 0.597 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 -7.497 22.094 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.044 4.044 5 C -0.555 4.555 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 C -0.002 4.002 14 N -0.363 5.363 15 C 0.121 3.879 16 C -0.164 4.164 17 C -0.081 4.081 18 C -0.150 4.150 19 C -0.063 4.063 20 C -0.194 4.194 21 N -0.148 5.148 22 N -0.010 5.010 23 N -0.122 5.122 24 C -0.050 4.050 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.238 0.762 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.920 -7.061 23.108 24.478 hybrid contribution 0.646 -1.175 -1.233 1.822 sum 4.566 -8.236 21.875 23.816 Atomic orbital electron populations 1.21742 0.95379 1.01218 1.00869 1.21247 0.96073 1.00001 0.93311 0.91204 1.19566 0.96047 0.95865 0.92900 1.21081 1.35716 1.09685 0.89028 0.90798 1.25032 0.95582 0.96979 0.95931 1.69913 1.46897 1.39271 0.98078 0.86800 0.80621 0.84230 0.77741 1.20329 1.21433 1.19033 1.21706 0.99103 0.95282 0.84126 1.44996 1.61081 1.28203 1.02066 1.17577 0.92562 0.92125 0.85643 1.20494 1.01850 0.96662 0.97435 1.19476 1.00460 0.99256 0.88937 1.19591 1.08830 1.01161 0.85407 1.19474 1.00064 0.93550 0.93248 1.19317 1.09506 1.03251 0.87318 1.75331 1.19932 1.20723 0.98783 1.77898 1.06545 0.93928 1.22633 1.46917 1.41344 1.19972 1.04016 1.22120 0.96873 0.86020 0.99998 0.91203 0.93504 0.94709 0.96465 0.96794 0.92713 0.92425 0.92390 0.76163 0.84382 0.85375 0.84909 0.89588 0.88715 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.88 37.16 0.33 -1.92 16 2 C -0.09 -1.52 2.37 -90.62 -0.22 -1.73 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 4 C -0.01 -0.13 3.52 -27.88 -0.10 -0.23 16 5 C -0.52 -13.86 8.96 -34.44 -0.31 -14.16 16 6 H 0.07 2.13 7.30 -52.49 -0.38 1.75 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 9 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 13 C 0.12 1.70 4.29 -4.05 -0.02 1.68 16 14 N -0.74 -9.24 5.46 -58.61 -0.32 -9.56 16 15 C 0.23 2.86 6.65 -83.74 -0.56 2.30 16 16 C -0.14 -1.55 9.24 -39.69 -0.37 -1.92 16 17 C -0.06 -0.59 10.00 -39.91 -0.40 -0.99 16 18 C -0.03 -0.38 6.94 -84.14 -0.58 -0.97 16 19 C 0.06 0.89 7.36 -85.05 -0.63 0.26 16 20 C -0.16 -2.16 9.94 -39.07 -0.39 -2.55 16 21 N -0.27 -4.22 12.43 32.03 0.40 -3.83 16 22 N -0.03 -0.41 13.08 60.35 0.79 0.38 16 23 N -0.32 -3.50 3.80 -65.48 -0.25 -3.75 16 24 C 0.09 0.47 11.40 59.85 0.68 1.15 16 25 H 0.07 1.34 6.95 -51.93 -0.36 0.98 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.49 7.18 -51.93 -0.37 0.11 16 28 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 29 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 32 H 0.06 0.80 7.95 -51.92 -0.41 0.39 16 33 H 0.40 4.77 7.66 -40.82 -0.31 4.46 16 34 H 0.14 1.36 6.68 -52.49 -0.35 1.01 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -32.39 323.52 -6.54 -38.94 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.50 Total: 0.39 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -2.64 Total: -17.33 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 1.39 Total: -43.07 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.39 -6.54 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602698693.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.874 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds