Wall clock time and date at job start Mon Mar 30 2020 01:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46496 * 109.47484 * 295.00296 * 13 2 1 15 15 C 1.39886 * 120.00344 * 180.02562 * 14 13 2 16 16 C 1.39524 * 119.80218 * 359.71692 * 15 14 13 17 17 C 1.36618 * 120.64467 * 179.73416 * 16 15 14 18 18 C 1.38942 * 119.97712 * 0.57037 * 17 16 15 19 19 C 1.40753 * 119.93612 * 359.69225 * 18 17 16 20 20 C 1.38144 * 119.80595 * 180.02562 * 15 14 13 21 21 N 1.34830 * 105.64375 * 180.02562 * 19 18 17 22 22 N 1.28660 * 109.25061 * 0.02562 * 21 19 18 23 23 N 1.28818 * 111.76001 * 0.02562 * 22 21 19 24 24 C 1.46498 * 125.92607 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 0.97005 * 119.99584 * 359.97438 * 14 13 2 34 34 H 1.07995 * 119.67719 * 0.02562 * 16 15 14 35 35 H 1.07998 * 120.00774 * 180.26125 * 17 16 15 36 36 H 1.07999 * 120.26244 * 359.94675 * 20 15 14 37 37 H 1.09003 * 109.47314 * 90.02208 * 24 23 22 38 38 H 1.09000 * 109.47093 * 210.01579 * 24 23 22 39 39 H 1.08997 * 109.47305 * 330.02130 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6523 0.0353 2.4424 15 6 2.0093 -0.4301 3.7123 16 6 2.7294 -1.6185 3.8382 17 6 3.0917 -2.0860 5.0697 18 6 2.7326 -1.3824 6.2127 19 6 2.0014 -0.1850 6.0996 20 6 1.6412 0.2863 4.8347 21 7 1.8142 0.2474 7.3630 22 7 2.3638 -0.5803 8.1804 23 7 2.9227 -1.5624 7.5619 24 6 3.6363 -2.6781 8.1880 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 1.8938 -0.0449 -5.6799 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.1487 0.8594 2.3517 34 1 3.0072 -2.1716 2.9533 35 1 3.6527 -3.0049 5.1550 36 1 1.0802 1.2037 4.7350 37 1 2.9358 -3.4872 8.3949 38 1 4.4150 -3.0354 7.5141 39 1 4.0891 -2.3422 9.1209 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602698693.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:02 Heat of formation + Delta-G solvation = 83.150260 kcal Electronic energy + Delta-G solvation = -20035.531891 eV Core-core repulsion = 16978.842107 eV Total energy + Delta-G solvation = -3056.689784 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.97289 -39.83555 -37.73422 -35.70419 -35.25254 -33.89770 -31.52569 -30.46756 -29.08262 -28.63119 -27.04166 -24.82542 -24.47170 -22.94147 -21.98404 -20.82978 -19.02080 -18.95512 -18.29449 -17.55649 -17.31255 -16.52707 -15.94278 -15.90163 -15.27714 -14.98201 -14.82421 -14.57335 -14.20240 -13.98337 -13.89374 -13.68039 -13.37994 -13.14117 -13.04355 -12.81361 -12.65771 -12.54940 -12.16045 -11.71538 -11.68789 -11.54108 -11.52148 -11.31185 -11.07004 -10.74853 -10.70663 -9.46173 -8.25436 -8.23007 -6.25973 -0.29845 0.54749 1.40729 1.41682 1.42602 1.44628 1.53696 2.41308 2.44944 2.76925 3.13066 3.21219 3.70429 3.86423 4.01498 4.13320 4.15435 4.21679 4.33192 4.36079 4.44077 4.57574 4.65126 4.78915 4.81808 4.95264 5.02817 5.08988 5.15521 5.25993 5.29910 5.31301 5.40613 5.49211 5.55223 5.69899 5.73687 5.78225 6.32636 6.41232 6.81285 6.82890 7.37882 7.40647 8.93736 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.039056 B = 0.003097 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.754645 B = 9039.419118 C = 9627.384559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 H 0.057 0.943 4 C -0.005 4.005 5 C -0.519 4.519 6 H 0.033 0.967 7 C -0.002 4.002 8 N -0.957 5.957 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.292 1.292 12 H -0.238 1.238 13 C 0.135 3.865 14 N -0.735 5.735 15 C 0.230 3.770 16 C -0.147 4.147 17 C -0.042 4.042 18 C -0.040 4.040 19 C 0.036 3.964 20 C -0.186 4.186 21 N -0.317 5.317 22 N -0.049 5.049 23 N -0.305 5.305 24 C 0.075 3.925 25 H 0.033 0.967 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.263 0.737 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.404 0.596 34 H 0.158 0.842 35 H 0.171 0.829 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 -10.826 23.702 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.101 4.101 3 H 0.075 0.925 4 C -0.043 4.043 5 C -0.558 4.558 6 H 0.051 0.949 7 C -0.198 4.198 8 N -0.598 5.598 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.161 1.161 13 C 0.011 3.989 14 N -0.364 5.364 15 C 0.122 3.878 16 C -0.171 4.171 17 C -0.064 4.064 18 C -0.159 4.159 19 C -0.091 4.091 20 C -0.215 4.215 21 N -0.191 5.191 22 N -0.029 5.029 23 N -0.108 5.108 24 C -0.064 4.064 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.240 0.760 34 H 0.175 0.825 35 H 0.188 0.812 36 H 0.147 0.853 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.776 -10.394 24.782 27.487 hybrid contribution 0.053 -0.114 -1.677 1.681 sum 5.829 -10.508 23.105 26.043 Atomic orbital electron populations 1.21667 0.95168 1.01436 1.00428 1.21075 0.96221 0.99318 0.93483 0.92452 1.19525 0.96490 0.95856 0.92420 1.21469 1.34284 1.08673 0.91329 0.94870 1.26051 0.97093 1.01114 0.95538 1.70091 1.49193 1.41787 0.98769 0.85676 0.79321 0.79295 0.78458 1.19370 1.21810 1.16097 1.21456 0.99540 0.95208 0.82665 1.44871 1.61362 1.28284 1.01870 1.17665 0.92596 0.92632 0.84937 1.20774 1.01540 0.96155 0.98627 1.19885 0.99137 0.99877 0.87488 1.19902 1.08714 1.00780 0.86526 1.19799 1.01127 0.94938 0.93190 1.19342 1.10769 1.03844 0.87562 1.75260 1.21882 1.22303 0.99673 1.77793 1.07350 0.94822 1.22912 1.47407 1.39744 1.19903 1.03793 1.22684 0.97766 0.84815 1.01123 0.94753 0.92871 0.92067 0.95721 0.95748 0.92802 0.91028 0.91455 0.76031 0.82486 0.81204 0.85276 0.87599 0.85866 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.88 71.98 0.64 -3.60 16 2 C -0.08 -2.73 2.37 -10.79 -0.03 -2.76 16 3 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.01 -0.21 3.52 29.85 0.10 -0.11 16 5 C -0.52 -28.29 8.96 25.60 0.23 -28.06 16 6 H 0.03 2.01 7.30 -2.91 -0.02 1.99 16 7 C 0.00 -0.12 5.47 84.65 0.46 0.34 16 8 N -0.96 -59.20 13.96 21.45 0.30 -58.90 16 9 Si 0.95 42.20 27.47 68.60 1.88 44.08 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 13 C 0.14 3.35 4.29 86.38 0.37 3.72 16 14 N -0.74 -16.89 5.46 -339.36 -1.85 -18.75 16 15 C 0.23 5.25 6.65 38.14 0.25 5.50 16 16 C -0.15 -2.69 9.24 22.20 0.21 -2.49 16 17 C -0.04 -0.67 10.00 22.06 0.22 -0.45 16 18 C -0.04 -0.87 6.94 39.05 0.27 -0.60 16 19 C 0.04 1.01 7.36 39.65 0.29 1.30 16 20 C -0.19 -4.82 9.94 22.60 0.22 -4.59 16 21 N -0.32 -10.00 12.43 -52.57 -0.65 -10.65 16 22 N -0.05 -1.31 13.08 37.02 0.48 -0.83 16 23 N -0.31 -6.00 3.80 -361.08 -1.37 -7.37 16 24 C 0.07 0.49 11.40 127.77 1.46 1.95 16 25 H 0.03 1.34 6.95 -2.39 -0.02 1.33 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.65 7.18 -2.39 -0.02 1.63 16 28 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 29 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 30 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.07 1.62 7.93 -2.39 -0.02 1.60 16 32 H 0.07 1.58 7.95 -2.38 -0.02 1.56 16 33 H 0.40 9.05 7.66 -92.70 -0.71 8.34 16 34 H 0.16 2.30 6.68 -2.91 -0.02 2.28 16 35 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -73.77 323.52 3.78 -69.99 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.29 Total: 12.27 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 4.71 Total: -29.84 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -3.10 Total: -96.50 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.88 Total: 44.08 kcal Total: -73.77 3.78 -69.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602698693.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.140 kcal (2) G-P(sol) polarization free energy of solvation -73.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds