Wall clock time and date at job start Mon Mar 30 2020 01:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46883 * 2 1 4 4 C 1.53005 * 109.47112 * 240.00359 * 2 1 3 5 5 C 1.50701 * 109.47171 * 59.99570 * 4 2 1 6 6 H 1.08002 * 120.00077 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00077 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99938 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47063 * 89.99879 * 9 7 5 11 11 H 1.48491 * 109.46986 * 209.99776 * 9 7 5 12 12 H 1.48493 * 109.46931 * 330.00154 * 9 7 5 13 13 C 1.52988 * 109.47501 * 120.00047 * 2 1 3 14 14 N 1.46503 * 109.47401 * 300.00310 * 13 2 1 15 15 C 1.40069 * 120.00146 * 180.02562 * 14 13 2 16 16 C 1.40750 * 119.96869 * 359.97438 * 15 14 13 17 17 C 1.36111 * 119.58282 * 179.97438 * 16 15 14 18 18 C 1.40657 * 119.38111 * 0.25452 * 17 16 15 19 19 N 1.32963 * 132.77028 * 179.74309 * 18 17 16 20 20 C 1.32456 * 109.67641 * 179.97438 * 19 18 17 21 21 N 1.31319 * 109.62301 * 359.49282 * 20 19 18 22 22 N 1.36527 * 119.82788 * 359.48724 * 18 17 16 23 23 C 1.35779 * 119.96737 * 180.02562 * 15 14 13 24 24 H 1.08998 * 109.46734 * 299.99610 * 1 2 3 25 25 H 1.08995 * 109.47320 * 60.00076 * 1 2 3 26 26 H 1.08996 * 109.46637 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47245 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47273 * 300.00431 * 3 2 1 29 29 H 1.08998 * 109.46662 * 60.00345 * 3 2 1 30 30 H 1.08998 * 109.47113 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.46905 * 300.00159 * 4 2 1 32 32 H 0.97001 * 119.99859 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47403 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47350 * 59.99789 * 13 2 1 35 35 H 0.97003 * 119.99847 * 359.97438 * 14 13 2 36 36 H 1.08004 * 120.21404 * 359.97438 * 16 15 14 37 37 H 1.08002 * 120.30503 * 179.97438 * 17 16 15 38 38 H 1.07999 * 125.19328 * 179.97438 * 20 19 18 39 39 H 1.08005 * 119.76580 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5513 -3.8528 9 14 1.2469 0.3982 -5.2572 10 1 2.2248 1.4398 -5.6620 11 1 1.0816 -0.5812 -6.3611 12 1 -0.0611 1.0356 -4.9610 13 6 2.0401 -0.7212 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8907 -0.5089 3.7175 16 6 2.7000 -1.6533 3.8458 17 6 3.0250 -2.1109 5.0858 18 6 2.5410 -1.4342 6.2199 19 7 2.6833 -1.6433 7.5252 20 6 2.0234 -0.7141 8.2003 21 7 1.4517 0.1184 7.3609 22 7 1.7620 -0.3234 6.0668 23 6 1.4373 0.1313 4.8257 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4427 -0.0005 28 1 1.6766 1.9565 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2496 31 1 1.6767 -1.7488 -1.2494 32 1 2.8608 -1.8826 -4.7338 33 1 3.1301 -0.7216 1.2489 34 1 1.6768 -1.7489 1.2492 35 1 0.9943 0.7582 2.3564 36 1 3.0610 -2.1652 2.9659 37 1 3.6449 -2.9882 5.1978 38 1 1.9705 -0.6466 9.2769 39 1 0.8155 1.0082 4.7217 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603428632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:07 Heat of formation + Delta-G solvation = 108.780056 kcal Electronic energy + Delta-G solvation = -20425.930005 eV Core-core repulsion = 17370.351612 eV Total energy + Delta-G solvation = -3055.578393 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.56448 -39.02329 -37.22000 -34.18108 -33.50290 -32.34501 -30.25310 -29.12571 -27.10429 -26.62322 -25.91614 -24.10154 -23.31882 -22.11212 -21.95232 -18.68372 -17.74218 -17.42547 -16.56911 -16.38476 -16.12156 -15.02941 -14.76637 -14.64504 -14.53467 -14.07140 -13.62629 -13.17398 -13.05409 -12.93346 -12.58126 -12.15395 -12.13425 -11.38776 -11.34858 -11.19051 -11.10666 -10.93559 -10.75000 -10.52702 -10.34987 -10.25931 -10.10408 -9.90724 -9.33915 -9.05129 -8.83425 -8.45280 -7.40690 -6.09851 -4.11175 0.61551 1.08350 2.08114 2.74494 3.24743 3.32382 3.33682 3.38461 3.46948 3.96040 4.21367 4.37413 4.56515 4.83972 4.92533 5.21922 5.26003 5.30484 5.42021 5.60405 5.61516 5.76127 5.93290 6.01935 6.02061 6.11691 6.23336 6.31265 6.39320 6.50862 6.52063 6.69705 6.90511 6.95538 6.97484 7.16383 7.50129 7.59892 7.62144 7.88269 7.98676 8.30019 8.93318 9.52812 11.01559 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.051414 B = 0.003174 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.465790 B = 8819.680512 C = 9167.771040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 C -0.128 4.128 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.129 3.871 14 N -0.726 5.726 15 C 0.201 3.799 16 C -0.102 4.102 17 C -0.068 4.068 18 C 0.239 3.761 19 N -0.550 5.550 20 C 0.219 3.781 21 N -0.352 5.352 22 N -0.242 5.242 23 C -0.021 4.021 24 H 0.029 0.971 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.404 0.596 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.220 0.780 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 1.270 15.539 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.071 4.071 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.006 3.994 14 N -0.356 5.356 15 C 0.092 3.908 16 C -0.130 4.130 17 C -0.090 4.090 18 C -0.014 4.014 19 N -0.281 5.281 20 C -0.082 4.082 21 N -0.187 5.187 22 N -0.016 5.016 23 C -0.157 4.157 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.241 0.759 36 H 0.172 0.828 37 H 0.176 0.824 38 H 0.236 0.764 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.995 1.376 15.738 15.829 hybrid contribution -0.508 0.736 -1.127 1.439 sum -1.503 2.112 14.611 14.839 Atomic orbital electron populations 1.21760 0.95135 1.01212 1.00375 1.20876 0.95591 0.95925 0.94684 1.21761 1.00521 0.95829 1.00373 1.19096 0.96297 0.95195 0.89498 1.21165 1.31352 1.12122 0.90495 0.92261 1.24999 0.95248 0.95029 0.99116 1.69949 1.36911 1.22974 1.23562 0.86649 0.79237 0.79449 0.83011 1.20727 1.21279 1.19926 1.21744 0.98434 0.95966 0.83233 1.44967 1.56623 1.32904 1.01070 1.17075 0.94645 0.93145 0.85966 1.21131 0.97836 0.95559 0.98443 1.20149 1.00613 1.00492 0.87708 1.21626 0.96170 0.89763 0.93815 1.70813 1.28602 1.28672 1.00057 1.25976 0.92539 0.88682 1.01013 1.78502 1.30239 1.25239 0.84690 1.47079 1.30455 1.18362 1.05658 1.20169 1.10777 1.05238 0.79519 0.95151 0.91412 0.93332 0.93331 0.91420 0.95148 0.96346 0.96332 0.92969 0.92063 0.92067 0.75901 0.82796 0.82371 0.76394 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.05 37.16 0.30 -1.73 16 2 C -0.07 -1.17 0.54 -154.51 -0.08 -1.25 16 3 C -0.13 -2.03 8.05 37.16 0.30 -1.73 16 4 C 0.04 0.81 4.04 -27.88 -0.11 0.70 16 5 C -0.51 -12.87 7.65 -34.44 -0.26 -13.13 16 6 H 0.06 1.44 5.68 -52.49 -0.30 1.14 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 9 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.13 1.75 3.81 -4.05 -0.02 1.73 16 14 N -0.73 -8.29 5.14 -58.84 -0.30 -8.59 16 15 C 0.20 2.28 6.61 -84.03 -0.56 1.73 16 16 C -0.10 -1.06 9.31 -39.40 -0.37 -1.43 16 17 C -0.07 -0.74 10.10 -39.43 -0.40 -1.14 16 18 C 0.24 3.29 7.88 -156.32 -1.23 2.06 16 19 N -0.55 -7.85 11.25 -13.99 -0.16 -8.00 16 20 C 0.22 2.75 12.98 -91.99 -1.19 1.56 16 21 N -0.35 -5.05 12.79 29.25 0.37 -4.68 16 22 N -0.24 -3.39 3.90 -12.16 -0.05 -3.44 16 23 C -0.02 -0.25 11.03 -16.54 -0.18 -0.44 16 24 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 25 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.19 6.62 -51.93 -0.34 0.85 16 29 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 34 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 35 H 0.40 4.32 6.17 -40.82 -0.25 4.07 16 36 H 0.15 1.37 6.80 -52.48 -0.36 1.02 16 37 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.22 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -30.16 319.32 -8.74 -38.90 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.23 Total: 1.68 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.90 Total: -11.63 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.60 Total: -49.18 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.16 -8.74 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603428632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.680 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds