Wall clock time and date at job start Mon Mar 30 2020 01:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46883 * 2 1 4 4 C 1.53005 * 109.47112 * 240.00359 * 2 1 3 5 5 C 1.50701 * 109.47171 * 59.99570 * 4 2 1 6 6 H 1.08002 * 120.00077 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00077 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99938 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47063 * 89.99879 * 9 7 5 11 11 H 1.48491 * 109.46986 * 209.99776 * 9 7 5 12 12 H 1.48493 * 109.46931 * 330.00154 * 9 7 5 13 13 C 1.52988 * 109.47501 * 120.00047 * 2 1 3 14 14 N 1.46503 * 109.47401 * 300.00310 * 13 2 1 15 15 C 1.40069 * 120.00146 * 180.02562 * 14 13 2 16 16 C 1.40750 * 119.96869 * 359.97438 * 15 14 13 17 17 C 1.36111 * 119.58282 * 179.97438 * 16 15 14 18 18 C 1.40657 * 119.38111 * 0.25452 * 17 16 15 19 19 N 1.32963 * 132.77028 * 179.74309 * 18 17 16 20 20 C 1.32456 * 109.67641 * 179.97438 * 19 18 17 21 21 N 1.31319 * 109.62301 * 359.49282 * 20 19 18 22 22 N 1.36527 * 119.82788 * 359.48724 * 18 17 16 23 23 C 1.35779 * 119.96737 * 180.02562 * 15 14 13 24 24 H 1.08998 * 109.46734 * 299.99610 * 1 2 3 25 25 H 1.08995 * 109.47320 * 60.00076 * 1 2 3 26 26 H 1.08996 * 109.46637 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47245 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47273 * 300.00431 * 3 2 1 29 29 H 1.08998 * 109.46662 * 60.00345 * 3 2 1 30 30 H 1.08998 * 109.47113 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.46905 * 300.00159 * 4 2 1 32 32 H 0.97001 * 119.99859 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47403 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47350 * 59.99789 * 13 2 1 35 35 H 0.97003 * 119.99847 * 359.97438 * 14 13 2 36 36 H 1.08004 * 120.21404 * 359.97438 * 16 15 14 37 37 H 1.08002 * 120.30503 * 179.97438 * 17 16 15 38 38 H 1.07999 * 125.19328 * 179.97438 * 20 19 18 39 39 H 1.08005 * 119.76580 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5513 -3.8528 9 14 1.2469 0.3982 -5.2572 10 1 2.2248 1.4398 -5.6620 11 1 1.0816 -0.5812 -6.3611 12 1 -0.0611 1.0356 -4.9610 13 6 2.0401 -0.7212 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8907 -0.5089 3.7175 16 6 2.7000 -1.6533 3.8458 17 6 3.0250 -2.1109 5.0858 18 6 2.5410 -1.4342 6.2199 19 7 2.6833 -1.6433 7.5252 20 6 2.0234 -0.7141 8.2003 21 7 1.4517 0.1184 7.3609 22 7 1.7620 -0.3234 6.0668 23 6 1.4373 0.1313 4.8257 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4427 -0.0005 28 1 1.6766 1.9565 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2496 31 1 1.6767 -1.7488 -1.2494 32 1 2.8608 -1.8826 -4.7338 33 1 3.1301 -0.7216 1.2489 34 1 1.6768 -1.7489 1.2492 35 1 0.9943 0.7582 2.3564 36 1 3.0610 -2.1652 2.9659 37 1 3.6449 -2.9882 5.1978 38 1 1.9705 -0.6466 9.2769 39 1 0.8155 1.0082 4.7217 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603428632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:06 Heat of formation + Delta-G solvation = 92.652330 kcal Electronic energy + Delta-G solvation = -20426.629356 eV Core-core repulsion = 17370.351612 eV Total energy + Delta-G solvation = -3056.277743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.51066 -40.06040 -38.43328 -35.45602 -34.43512 -34.10236 -31.20394 -30.25253 -28.78936 -27.92299 -27.09374 -25.07754 -24.80690 -23.26875 -22.91704 -19.94520 -18.70906 -18.51209 -18.27653 -17.50745 -17.09943 -16.48158 -15.95689 -15.72983 -15.70935 -15.13066 -14.77577 -14.41078 -14.32800 -14.17565 -13.91351 -13.56567 -13.34057 -12.84898 -12.70908 -12.56951 -12.34136 -12.29047 -12.13865 -12.13480 -11.92730 -11.54990 -11.10613 -11.09307 -10.95227 -10.81348 -10.48066 -9.76947 -8.35017 -8.12846 -6.18420 -0.24781 0.13687 1.15398 1.42070 1.43905 1.52463 1.81062 2.42405 2.47476 2.52082 3.09132 3.22640 3.35819 3.70411 3.97116 4.02538 4.08952 4.16006 4.31346 4.42875 4.72178 4.73422 4.80958 4.84911 4.93075 5.01875 5.14971 5.16782 5.21137 5.37795 5.48216 5.50629 5.55818 5.57272 5.59976 5.76175 5.86063 5.94039 6.14992 6.37203 6.69557 6.97112 7.02739 7.49034 8.99025 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.051414 B = 0.003174 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.465790 B = 8819.680512 C = 9167.771040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.066 0.934 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.264 1.264 13 C 0.142 3.858 14 N -0.718 5.718 15 C 0.205 3.795 16 C -0.099 4.099 17 C -0.067 4.067 18 C 0.221 3.779 19 N -0.575 5.575 20 C 0.219 3.781 21 N -0.380 5.380 22 N -0.254 5.254 23 C -0.028 4.028 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.064 0.936 30 H -0.006 1.006 31 H -0.006 1.006 32 H 0.259 0.741 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.410 0.590 36 H 0.171 0.829 37 H 0.182 0.818 38 H 0.255 0.745 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 2.061 16.438 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.181 4.181 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.084 0.916 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.775 3.225 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.188 1.188 13 C 0.018 3.982 14 N -0.349 5.349 15 C 0.096 3.904 16 C -0.126 4.126 17 C -0.088 4.088 18 C -0.032 4.032 19 N -0.307 5.307 20 C -0.081 4.081 21 N -0.215 5.215 22 N -0.027 5.027 23 C -0.164 4.164 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.012 0.988 31 H 0.012 0.988 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.248 0.752 36 H 0.188 0.812 37 H 0.199 0.801 38 H 0.271 0.729 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.576 2.192 16.650 16.867 hybrid contribution -0.328 0.485 -1.372 1.491 sum -1.904 2.677 15.278 15.627 Atomic orbital electron populations 1.21695 0.94313 1.01008 1.01016 1.20667 0.96144 0.96063 0.93568 1.21698 1.00103 0.95211 1.01038 1.18967 0.94631 0.94337 0.91737 1.21617 1.30230 1.11901 0.91466 0.91630 1.25808 0.95802 0.95835 1.02282 1.70075 1.38768 1.24736 1.23983 0.85692 0.79062 0.78269 0.79507 1.20376 1.21577 1.18843 1.21429 0.98499 0.95718 0.82573 1.44696 1.56796 1.32987 1.00425 1.17080 0.94563 0.93277 0.85527 1.21341 0.97206 0.95173 0.98907 1.20453 1.00506 1.00923 0.86961 1.22114 0.96480 0.90124 0.94455 1.70813 1.29624 1.29615 1.00603 1.26725 0.91295 0.87655 1.02460 1.78432 1.31508 1.26434 0.85155 1.47205 1.30779 1.18661 1.06006 1.20432 1.11000 1.05796 0.79169 0.91725 0.93506 0.93973 0.93976 0.93465 0.91725 0.98803 0.98787 0.93210 0.91802 0.91805 0.75198 0.81150 0.80088 0.72900 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.69 8.05 71.98 0.58 -3.11 16 2 C -0.06 -2.04 0.54 -52.18 -0.03 -2.07 16 3 C -0.12 -3.69 8.05 71.98 0.58 -3.11 16 4 C 0.04 1.84 4.04 29.85 0.12 1.96 16 5 C -0.51 -25.89 7.65 25.60 0.20 -25.70 16 6 H 0.07 3.16 5.68 -2.91 -0.02 3.15 16 7 C 0.00 0.00 5.46 84.65 0.46 0.46 16 8 N -0.93 -53.72 13.29 21.45 0.28 -53.43 16 9 Si 0.95 42.07 29.54 68.60 2.03 44.09 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 C 0.14 3.53 3.81 86.37 0.33 3.86 16 14 N -0.72 -14.31 5.14 -340.06 -1.75 -16.06 16 15 C 0.20 4.13 6.61 37.87 0.25 4.38 16 16 C -0.10 -1.82 9.31 22.39 0.21 -1.62 16 17 C -0.07 -1.32 10.10 22.37 0.23 -1.10 16 18 C 0.22 5.77 7.88 134.09 1.06 6.83 16 19 N -0.57 -15.75 11.25 -198.18 -2.23 -17.98 16 20 C 0.22 5.23 12.98 180.83 2.35 7.58 16 21 N -0.38 -10.51 12.79 -61.37 -0.78 -11.30 16 22 N -0.25 -6.77 3.90 -192.38 -0.75 -7.52 16 23 C -0.03 -0.63 11.03 83.46 0.92 0.29 16 24 H 0.06 1.49 6.86 -2.39 -0.02 1.47 16 25 H 0.05 1.59 6.62 -2.39 -0.02 1.58 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 1.60 6.62 -2.39 -0.02 1.58 16 29 H 0.06 1.48 6.86 -2.39 -0.02 1.47 16 30 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.06 1.59 7.96 -2.39 -0.02 1.57 16 34 H 0.06 1.59 7.96 -2.39 -0.02 1.57 16 35 H 0.41 7.29 6.17 -92.71 -0.57 6.71 16 36 H 0.17 2.58 6.80 -2.91 -0.02 2.56 16 37 H 0.18 2.61 8.06 -2.91 -0.02 2.58 16 38 H 0.26 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -65.74 319.32 4.54 -61.20 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.49 Total: 12.32 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 7.25 Total: -11.33 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -5.23 Total: -106.29 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -65.74 4.54 -61.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603428632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.855 kcal (2) G-P(sol) polarization free energy of solvation -65.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds