Wall clock time and date at job start Mon Mar 30 2020 01:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99885 * 2 1 4 4 H 1.48493 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47149 * 300.00040 * 3 2 1 6 6 H 1.48507 * 109.47114 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00215 * 197.02713 * 7 2 1 9 9 N 1.36939 * 119.99534 * 17.02763 * 7 2 1 10 10 C 1.47083 * 120.87928 * 206.57760 * 9 7 2 11 11 C 1.53242 * 108.52077 * 231.16622 * 10 9 7 12 12 N 1.46897 * 109.34004 * 306.16926 * 11 10 9 13 13 C 1.39042 * 110.99994 * 187.25393 * 12 11 10 14 14 C 1.39530 * 120.23844 * 180.02562 * 13 12 11 15 15 C 1.38418 * 117.83366 * 180.02562 * 14 13 12 16 16 C 1.38688 * 118.44497 * 359.97438 * 15 14 13 17 17 N 1.32073 * 119.60064 * 359.97438 * 16 15 14 18 18 N 1.28257 * 122.38130 * 0.05640 * 17 16 15 19 19 C 1.51327 * 109.49871 * 180.02562 * 16 15 14 20 20 C 1.54379 * 105.24830 * 342.87612 * 19 16 15 21 21 C 1.50987 * 131.57351 * 179.97438 * 15 14 13 22 22 C 1.46905 * 111.26722 * 63.10845 * 12 11 10 23 23 C 1.47084 * 120.88408 * 26.56424 * 9 7 2 24 24 H 0.96999 * 120.00070 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.62508 * 111.45770 * 10 9 7 26 26 H 1.08993 * 109.62787 * 350.87694 * 10 9 7 27 27 H 1.08999 * 109.48987 * 186.21329 * 11 10 9 28 28 H 1.08993 * 109.49145 * 66.13273 * 11 10 9 29 29 H 1.07996 * 121.08293 * 359.97438 * 14 13 12 30 30 H 1.08999 * 110.28881 * 101.81410 * 19 16 15 31 31 H 1.08997 * 110.28860 * 223.93558 * 19 16 15 32 32 H 1.09001 * 110.80688 * 144.49820 * 20 19 16 33 33 H 1.09001 * 110.80766 * 268.01109 * 20 19 16 34 34 H 1.08991 * 110.31642 * 315.99294 * 21 15 14 35 35 H 1.08999 * 110.31413 * 78.07469 * 21 15 14 36 36 H 1.09000 * 109.49230 * 56.85429 * 22 12 11 37 37 H 1.09001 * 109.48780 * 176.93403 * 22 12 11 38 38 H 1.09006 * 109.62283 * 248.54004 * 23 9 7 39 39 H 1.09002 * 109.62869 * 9.11838 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0547 -1.2225 0.2744 9 7 1.3706 -2.3622 -0.3462 10 6 1.8309 -3.6609 0.1682 11 6 2.0024 -4.6199 -1.0147 12 7 0.7549 -4.6654 -1.7889 13 6 0.8152 -5.6450 -2.7739 14 6 -0.2708 -5.8537 -3.6247 15 6 -0.1573 -6.8422 -4.5870 16 6 1.0232 -7.5671 -4.6532 17 7 2.0010 -7.3003 -3.8065 18 7 1.9045 -6.3868 -2.9115 19 6 0.9286 -8.5854 -5.7687 20 6 -0.5778 -8.7017 -6.0857 21 6 -1.1184 -7.3231 -5.6475 22 6 0.4403 -3.3534 -2.3700 23 6 0.2047 -2.3425 -1.2428 24 1 -0.4850 0.8400 0.0004 25 1 1.0920 -4.0629 0.8613 26 1 2.7856 -3.5349 0.6788 27 1 2.2364 -5.6175 -0.6431 28 1 2.8138 -4.2693 -1.6524 29 1 -1.1709 -5.2637 -3.5349 30 1 1.4736 -8.2367 -6.6459 31 1 1.3203 -9.5469 -5.4369 32 1 -0.7380 -8.8591 -7.1523 33 1 -1.0357 -9.5004 -5.5022 34 1 -2.1208 -7.4243 -5.2319 35 1 -1.1271 -6.6331 -6.4913 36 1 1.2734 -3.0204 -2.9890 37 1 -0.4587 -3.4325 -2.9813 38 1 -0.6906 -2.6178 -0.6852 39 1 0.0842 -1.3448 -1.6649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609149943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:23 Heat of formation + Delta-G solvation = 94.688390 kcal Electronic energy + Delta-G solvation = -21057.321901 eV Core-core repulsion = 18001.132447 eV Total energy + Delta-G solvation = -3056.189453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33052 -38.60678 -36.82075 -34.71402 -32.42446 -31.14660 -30.52032 -29.60550 -28.11678 -26.14277 -24.63346 -23.35709 -22.43921 -21.65120 -20.98943 -19.34443 -17.65920 -17.00468 -16.29732 -15.97037 -15.42353 -14.79224 -14.76527 -14.07746 -13.91865 -13.66250 -13.46370 -13.24918 -13.21522 -12.92989 -12.75003 -12.21068 -11.56115 -11.53078 -11.48359 -11.25629 -10.95321 -10.75867 -10.68220 -10.42103 -10.28907 -10.18540 -9.85019 -9.78376 -9.56530 -9.31056 -8.57849 -7.97446 -6.76871 -5.85091 -3.26236 0.93000 1.10656 3.34437 3.42840 3.45141 3.49365 3.68371 3.99618 4.27069 4.45623 4.57248 4.61855 4.68262 4.90033 5.03152 5.30523 5.31008 5.35543 5.37099 5.42314 5.55183 5.60341 5.68098 5.79618 5.81284 5.86907 6.00642 6.05846 6.09782 6.16422 6.26830 6.39424 6.58120 6.83201 7.06760 7.33484 7.39512 7.51002 7.75102 8.35569 8.97761 9.13619 9.76354 10.34012 11.24439 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.039037 B = 0.003951 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.102038 B = 7084.640656 C = 7386.314758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.596 5.596 10 C 0.145 3.855 11 C 0.051 3.949 12 N -0.461 5.461 13 C 0.267 3.733 14 C -0.129 4.129 15 C -0.081 4.081 16 C 0.017 3.983 17 N -0.215 5.215 18 N -0.284 5.284 19 C -0.059 4.059 20 C -0.118 4.118 21 C -0.081 4.081 22 C 0.038 3.962 23 C 0.177 3.823 24 H 0.254 0.746 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.148 0.852 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.031 0.969 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 -14.625 -12.361 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.319 5.319 10 C 0.018 3.982 11 C -0.077 4.077 12 N -0.178 5.178 13 C 0.029 3.971 14 C -0.160 4.160 15 C -0.092 4.092 16 C -0.132 4.132 17 N -0.056 5.056 18 N -0.132 5.132 19 C -0.098 4.098 20 C -0.156 4.156 21 C -0.119 4.119 22 C -0.089 4.089 23 C 0.051 3.949 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.165 0.835 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.255 -14.819 -11.386 18.824 hybrid contribution -0.601 1.433 -0.783 1.740 sum -2.856 -13.387 -12.169 18.315 Atomic orbital electron populations 1.70019 1.05229 1.25510 1.54156 1.25032 0.95341 0.98443 1.00862 0.86202 0.79401 0.83777 0.77299 1.20211 1.21543 1.21649 1.19265 0.92764 0.84587 1.41539 0.91320 1.44157 1.34044 1.01502 1.52201 1.21091 0.98433 0.86168 0.92492 1.22659 0.87704 1.00906 0.96420 1.59007 1.34735 1.05540 1.18529 1.21771 0.90520 0.95237 0.89613 1.21417 1.00021 0.99247 0.95323 1.21454 0.97447 0.94469 0.95841 1.23284 0.92313 0.99407 0.98197 1.72338 1.25228 1.08802 0.99243 1.73340 1.19887 1.04854 1.15113 1.20833 0.97147 0.97154 0.94672 1.22349 0.94485 0.96717 1.02093 1.21015 0.97850 0.96968 0.96036 1.23214 0.99758 0.86451 0.99467 1.20935 0.89405 0.96450 0.88154 0.93579 0.95422 0.91733 0.90412 0.93316 0.83468 0.89383 0.89643 0.89721 0.90499 0.89730 0.89178 0.93947 0.91182 0.95042 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 11.15 55.49 0.62 -25.11 16 2 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 3 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.88 9.63 -15.06 -0.15 -7.02 16 8 H 0.07 1.85 7.88 -52.49 -0.41 1.43 16 9 N -0.60 -14.97 3.04 -172.01 -0.52 -15.49 16 10 C 0.14 3.13 6.69 -3.60 -0.02 3.10 16 11 C 0.05 1.00 4.84 -3.70 -0.02 0.98 16 12 N -0.46 -8.77 4.66 -172.73 -0.81 -9.57 16 13 C 0.27 4.72 6.48 -154.75 -1.00 3.72 16 14 C -0.13 -1.88 9.28 -39.03 -0.36 -2.24 16 15 C -0.08 -1.02 6.20 -104.25 -0.65 -1.66 16 16 C 0.02 0.23 7.42 -82.01 -0.61 -0.38 16 17 N -0.22 -3.69 11.50 33.79 0.39 -3.31 16 18 N -0.28 -5.32 9.86 31.24 0.31 -5.01 16 19 C -0.06 -0.53 6.76 -26.85 -0.18 -0.71 16 20 C -0.12 -0.78 7.08 -25.26 -0.18 -0.96 16 21 C -0.08 -0.65 6.76 -27.00 -0.18 -0.84 16 22 C 0.04 0.73 5.42 -3.70 -0.02 0.71 16 23 C 0.18 4.15 5.42 -3.60 -0.02 4.13 16 24 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.33 7.95 -51.93 -0.41 0.92 16 27 H 0.08 1.44 7.67 -51.93 -0.40 1.05 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.15 1.87 7.22 -52.49 -0.38 1.49 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.16 6.69 -51.93 -0.35 0.81 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 2.49 6.12 -51.93 -0.32 2.17 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -31.21 311.29 -9.46 -40.66 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.63 Total: -2.09 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -3.48 Total: -1.20 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.01 Total: -58.49 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.21 -9.46 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609149943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.351 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds