Wall clock time and date at job start Mon Mar 30 2020 01:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99885 * 2 1 4 4 H 1.48493 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47149 * 300.00040 * 3 2 1 6 6 H 1.48507 * 109.47114 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00215 * 197.02713 * 7 2 1 9 9 N 1.36939 * 119.99534 * 17.02763 * 7 2 1 10 10 C 1.47083 * 120.87928 * 206.57760 * 9 7 2 11 11 C 1.53242 * 108.52077 * 231.16622 * 10 9 7 12 12 N 1.46897 * 109.34004 * 306.16926 * 11 10 9 13 13 C 1.39042 * 110.99994 * 187.25393 * 12 11 10 14 14 C 1.39530 * 120.23844 * 180.02562 * 13 12 11 15 15 C 1.38418 * 117.83366 * 180.02562 * 14 13 12 16 16 C 1.38688 * 118.44497 * 359.97438 * 15 14 13 17 17 N 1.32073 * 119.60064 * 359.97438 * 16 15 14 18 18 N 1.28257 * 122.38130 * 0.05640 * 17 16 15 19 19 C 1.51327 * 109.49871 * 180.02562 * 16 15 14 20 20 C 1.54379 * 105.24830 * 342.87612 * 19 16 15 21 21 C 1.50987 * 131.57351 * 179.97438 * 15 14 13 22 22 C 1.46905 * 111.26722 * 63.10845 * 12 11 10 23 23 C 1.47084 * 120.88408 * 26.56424 * 9 7 2 24 24 H 0.96999 * 120.00070 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.62508 * 111.45770 * 10 9 7 26 26 H 1.08993 * 109.62787 * 350.87694 * 10 9 7 27 27 H 1.08999 * 109.48987 * 186.21329 * 11 10 9 28 28 H 1.08993 * 109.49145 * 66.13273 * 11 10 9 29 29 H 1.07996 * 121.08293 * 359.97438 * 14 13 12 30 30 H 1.08999 * 110.28881 * 101.81410 * 19 16 15 31 31 H 1.08997 * 110.28860 * 223.93558 * 19 16 15 32 32 H 1.09001 * 110.80688 * 144.49820 * 20 19 16 33 33 H 1.09001 * 110.80766 * 268.01109 * 20 19 16 34 34 H 1.08991 * 110.31642 * 315.99294 * 21 15 14 35 35 H 1.08999 * 110.31413 * 78.07469 * 21 15 14 36 36 H 1.09000 * 109.49230 * 56.85429 * 22 12 11 37 37 H 1.09001 * 109.48780 * 176.93403 * 22 12 11 38 38 H 1.09006 * 109.62283 * 248.54004 * 23 9 7 39 39 H 1.09002 * 109.62869 * 9.11838 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0547 -1.2225 0.2744 9 7 1.3706 -2.3622 -0.3462 10 6 1.8309 -3.6609 0.1682 11 6 2.0024 -4.6199 -1.0147 12 7 0.7549 -4.6654 -1.7889 13 6 0.8152 -5.6450 -2.7739 14 6 -0.2708 -5.8537 -3.6247 15 6 -0.1573 -6.8422 -4.5870 16 6 1.0232 -7.5671 -4.6532 17 7 2.0010 -7.3003 -3.8065 18 7 1.9045 -6.3868 -2.9115 19 6 0.9286 -8.5854 -5.7687 20 6 -0.5778 -8.7017 -6.0857 21 6 -1.1184 -7.3231 -5.6475 22 6 0.4403 -3.3534 -2.3700 23 6 0.2047 -2.3425 -1.2428 24 1 -0.4850 0.8400 0.0004 25 1 1.0920 -4.0629 0.8613 26 1 2.7856 -3.5349 0.6788 27 1 2.2364 -5.6175 -0.6431 28 1 2.8138 -4.2693 -1.6524 29 1 -1.1709 -5.2637 -3.5349 30 1 1.4736 -8.2367 -6.6459 31 1 1.3203 -9.5469 -5.4369 32 1 -0.7380 -8.8591 -7.1523 33 1 -1.0357 -9.5004 -5.5022 34 1 -2.1208 -7.4243 -5.2319 35 1 -1.1271 -6.6331 -6.4913 36 1 1.2734 -3.0204 -2.9890 37 1 -0.4587 -3.4325 -2.9813 38 1 -0.6906 -2.6178 -0.6852 39 1 0.0842 -1.3448 -1.6649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609149943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:22 Heat of formation + Delta-G solvation = 75.206089 kcal Electronic energy + Delta-G solvation = -21058.166716 eV Core-core repulsion = 18001.132447 eV Total energy + Delta-G solvation = -3057.034269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.48562 -40.03740 -37.90028 -36.39168 -33.93865 -32.67919 -32.07438 -30.90203 -29.25730 -27.70995 -25.80431 -25.11999 -23.95087 -22.91564 -21.78748 -21.05441 -19.15812 -18.51088 -17.68747 -17.00866 -16.70951 -16.46326 -16.06659 -15.61483 -15.39876 -15.17848 -15.01444 -14.69564 -14.38911 -14.05145 -13.79211 -13.34181 -13.14569 -12.91867 -12.70606 -12.51944 -12.32803 -12.18697 -12.11836 -12.05629 -11.91214 -11.80653 -11.62647 -11.44903 -10.65750 -10.59117 -10.43423 -9.39700 -8.78260 -7.92873 -5.37346 -0.17657 -0.05637 1.45567 1.47768 1.58434 2.21643 2.48684 2.53503 2.99478 3.23341 3.35222 3.52689 3.54835 3.72389 3.84350 4.10690 4.12184 4.18991 4.19429 4.32372 4.41503 4.48435 4.56620 4.67477 4.74453 4.76466 4.81801 4.92245 4.95779 4.97509 5.12507 5.19260 5.23315 5.28063 5.33768 5.55103 5.59336 5.76959 5.96849 6.31801 7.08017 7.75431 7.77383 8.30244 9.15185 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.039037 B = 0.003951 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.102038 B = 7084.640656 C = 7386.314758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.046 4.046 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.268 4.268 8 H 0.067 0.933 9 N -0.614 5.614 10 C 0.145 3.855 11 C 0.069 3.931 12 N -0.467 5.467 13 C 0.245 3.755 14 C -0.136 4.136 15 C -0.073 4.073 16 C 0.017 3.983 17 N -0.253 5.253 18 N -0.318 5.318 19 C -0.061 4.061 20 C -0.108 4.108 21 C -0.080 4.080 22 C 0.055 3.945 23 C 0.186 3.814 24 H 0.253 0.747 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.033 0.967 29 H 0.166 0.834 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.029 0.971 37 H 0.101 0.899 38 H 0.012 0.988 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 -16.089 -14.791 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.217 1.217 7 C -0.398 4.398 8 H 0.085 0.915 9 N -0.338 5.338 10 C 0.020 3.980 11 C -0.060 4.060 12 N -0.185 5.185 13 C 0.006 3.994 14 C -0.166 4.166 15 C -0.085 4.085 16 C -0.133 4.133 17 N -0.093 5.093 18 N -0.164 5.164 19 C -0.100 4.100 20 C -0.145 4.145 21 C -0.117 4.117 22 C -0.072 4.072 23 C 0.059 3.941 24 H 0.062 0.938 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.051 0.949 29 H 0.183 0.817 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.047 0.953 37 H 0.119 0.881 38 H 0.030 0.970 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.172 -16.331 -13.826 21.632 hybrid contribution -0.329 1.736 -0.124 1.772 sum -3.501 -14.595 -13.950 20.491 Atomic orbital electron populations 1.70157 1.06491 1.26046 1.55110 1.25761 0.96132 1.01338 1.00886 0.85190 0.78463 0.79701 0.76960 1.19451 1.21332 1.21716 1.19550 0.92986 0.85787 1.41462 0.91513 1.44419 1.34325 1.02094 1.52982 1.21153 0.98282 0.85280 0.93329 1.22352 0.87882 1.00364 0.95380 1.59004 1.34402 1.05533 1.19600 1.21787 0.91764 0.95183 0.90615 1.21645 0.99650 1.00155 0.95189 1.22061 0.98129 0.92693 0.95572 1.24197 0.91667 0.99687 0.97766 1.72245 1.27104 1.09486 1.00454 1.73207 1.20934 1.05840 1.16446 1.21106 0.99560 0.96045 0.93297 1.22413 0.91989 0.95895 1.04226 1.21232 0.97459 0.97983 0.94994 1.22903 1.00600 0.85979 0.97697 1.20695 0.88295 0.96307 0.88758 0.93791 0.95881 0.91306 0.89606 0.94882 0.81685 0.87823 0.88898 0.86554 0.89761 0.87920 0.87173 0.95265 0.88086 0.96987 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.26 11.15 21.65 0.24 -54.02 16 2 C -0.05 -2.53 4.93 84.86 0.42 -2.11 16 3 Si 0.97 44.73 29.59 68.60 2.03 46.76 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.27 -14.96 9.63 84.03 0.81 -14.15 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 9 N -0.61 -31.81 3.04 -698.11 -2.12 -33.93 16 10 C 0.15 6.47 6.69 86.35 0.58 7.05 16 11 C 0.07 2.76 4.84 86.38 0.42 3.18 16 12 N -0.47 -17.98 4.66 -700.41 -3.26 -21.25 16 13 C 0.25 8.65 6.48 133.12 0.86 9.51 16 14 C -0.14 -3.74 9.28 22.62 0.21 -3.53 16 15 C -0.07 -1.64 6.20 -19.62 -0.12 -1.76 16 16 C 0.02 0.42 7.42 42.83 0.32 0.74 16 17 N -0.25 -8.63 11.50 -47.01 -0.54 -9.17 16 18 N -0.32 -12.04 9.86 -55.06 -0.54 -12.58 16 19 C -0.06 -0.87 6.76 30.52 0.21 -0.66 16 20 C -0.11 -0.86 7.08 31.55 0.22 -0.64 16 21 C -0.08 -0.90 6.76 30.42 0.21 -0.70 16 22 C 0.06 2.16 5.42 86.38 0.47 2.63 16 23 C 0.19 8.98 5.42 86.35 0.47 9.44 16 24 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 25 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 2.93 7.95 -2.39 -0.02 2.91 16 27 H 0.09 3.28 7.67 -2.39 -0.02 3.26 16 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.17 3.81 7.22 -2.91 -0.02 3.79 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.12 0.30 8.14 -2.39 -0.02 0.29 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 37 H 0.10 3.26 6.69 -2.39 -0.02 3.24 16 38 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.07 3.80 6.12 -2.39 -0.01 3.78 16 Total: -1.00 -70.16 311.29 1.91 -68.25 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.04 Total: 6.95 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.06 Total: 9.00 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -6.23 Total: -130.95 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -70.16 1.91 -68.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609149943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.451 kcal (2) G-P(sol) polarization free energy of solvation -70.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds