Wall clock time and date at job start Mon Mar 30 2020 01:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00266 * 2 1 4 4 C 1.50694 * 109.47475 * 179.97438 * 3 2 1 5 5 C 1.38307 * 119.96605 * 270.02157 * 4 3 2 6 6 C 1.38261 * 120.15068 * 180.02562 * 5 4 3 7 7 C 1.38129 * 120.07615 * 359.73889 * 6 5 4 8 8 C 1.38891 * 119.92154 * 0.49377 * 7 6 5 9 9 N 1.39678 * 120.07441 * 179.78311 * 8 7 6 10 10 C 1.46498 * 119.99747 * 0.02562 * 9 8 7 11 11 C 1.52996 * 109.47059 * 179.72192 * 10 9 8 12 12 H 1.09008 * 109.47304 * 304.99667 * 11 10 9 13 13 C 1.47199 * 109.47335 * 64.99716 * 11 10 9 14 14 N 8.63740 * 137.07538 * 301.49334 * 2 1 3 15 15 C 1.53003 * 109.47530 * 184.99929 * 11 10 9 16 16 C 1.50690 * 109.47563 * 174.99874 * 15 11 10 17 17 H 1.08004 * 119.99810 * 359.97438 * 16 15 11 18 18 C 1.37877 * 120.00273 * 179.97438 * 16 15 11 19 19 N 1.31515 * 119.99838 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00187 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.47018 * 90.00325 * 20 18 16 22 22 H 1.48496 * 109.47479 * 209.99920 * 20 18 16 23 23 H 1.48497 * 109.47400 * 330.00483 * 20 18 16 24 24 C 1.38086 * 119.96201 * 90.00175 * 4 3 2 25 25 H 1.08997 * 109.47058 * 60.00068 * 1 2 3 26 26 H 1.09004 * 109.46959 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46642 * 299.99849 * 1 2 3 28 28 H 1.08998 * 109.46881 * 59.99681 * 3 2 1 29 29 H 1.09003 * 109.47153 * 300.00416 * 3 2 1 30 30 H 1.08005 * 119.92378 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.96567 * 180.02562 * 6 5 4 32 32 H 1.08001 * 120.03796 * 180.27431 * 7 6 5 33 33 H 0.97001 * 119.99807 * 179.71805 * 9 8 7 34 34 H 1.09004 * 109.46963 * 299.71988 * 10 9 8 35 35 H 1.08994 * 109.47567 * 59.72140 * 10 9 8 36 36 H 1.08998 * 109.46886 * 295.00118 * 15 11 10 37 37 H 1.09002 * 109.46923 * 54.99368 * 15 11 10 38 38 H 0.96998 * 119.99896 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.03411 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2006 1.1317 1.1991 6 6 5.5790 1.0231 1.2041 7 6 6.2730 0.9635 0.0114 8 6 5.5855 1.0231 -1.1940 9 7 6.2845 0.9677 -2.4020 10 6 7.7444 0.8459 -2.3985 11 6 8.2557 0.7996 -3.8398 12 1 7.7538 -0.0047 -4.3778 13 6 7.9736 2.0836 -4.5020 14 7 7.7537 3.0730 -5.0159 15 6 9.7649 0.5476 -3.8378 16 6 10.2481 0.3798 -5.2552 17 1 9.5486 0.4458 -6.0756 18 6 11.5830 0.1420 -5.5050 19 7 12.4346 0.0611 -4.5060 20 14 12.1818 -0.0668 -7.2620 21 1 12.5702 1.2565 -7.8131 22 1 13.3569 -0.9746 -7.2800 23 1 11.0946 -0.6480 -8.0898 24 6 4.2005 1.1319 -1.1954 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6601 1.1747 2.1332 31 1 6.1133 0.9802 2.1417 32 1 7.3493 0.8742 0.0160 33 1 5.8029 1.0053 -3.2431 34 1 8.1794 1.7041 -1.8861 35 1 8.0315 -0.0697 -1.8816 36 1 10.2740 1.3948 -3.3783 37 1 9.9813 -0.3576 -3.2705 38 1 13.3737 -0.1066 -4.6817 39 1 3.6625 1.1748 -2.1309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609574362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:45 Heat of formation + Delta-G solvation = -6.497419 kcal Electronic energy + Delta-G solvation = -19570.215275 eV Core-core repulsion = 16477.345325 eV Total energy + Delta-G solvation = -3092.869950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.64011 -38.00564 -37.09895 -35.11633 -33.67294 -31.97986 -31.69762 -29.23487 -27.38730 -26.47380 -25.49971 -23.56808 -22.47974 -21.77907 -20.54154 -17.49029 -16.87625 -16.59508 -16.57550 -16.23478 -15.77469 -15.31301 -15.01876 -14.58365 -14.09568 -13.80144 -13.64160 -13.20682 -13.05794 -12.64157 -12.53007 -12.41855 -12.21090 -12.01045 -11.65557 -11.43964 -11.35714 -11.15280 -10.94582 -10.77849 -10.62303 -10.41014 -9.94805 -9.91817 -9.70541 -9.33794 -8.80773 -8.52167 -7.29385 -6.16335 -4.20281 1.37066 1.69168 3.25707 3.32647 3.34747 3.42643 3.48419 3.53464 3.64638 4.13847 4.35411 4.63956 4.74210 4.81504 5.04225 5.05004 5.12497 5.18725 5.21868 5.25479 5.30734 5.38662 5.45177 5.57909 5.63068 5.84111 5.94522 6.03922 6.21023 6.31828 6.40837 6.56255 6.68774 6.86361 6.93304 7.32507 7.41134 7.44390 7.77796 7.81915 8.13665 8.29141 8.83702 9.45747 10.94457 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.002961 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.491709 B = 9454.808729 C = 9793.903498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.104 3.896 4 C -0.050 4.050 5 C -0.166 4.166 6 C -0.074 4.074 7 C -0.190 4.190 8 C 0.222 3.778 9 N -0.747 5.747 10 C 0.131 3.869 11 C -0.003 4.003 12 H 0.108 0.892 13 C 0.238 3.762 14 N -0.467 5.467 15 C 0.034 3.966 16 C -0.530 4.530 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.178 4.178 25 H 0.040 0.960 26 H 0.086 0.914 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.398 0.602 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.028 0.972 37 H 0.042 0.958 38 H 0.264 0.736 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.814 -0.483 11.876 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.302 6.302 3 C 0.027 3.973 4 C -0.050 4.050 5 C -0.186 4.186 6 C -0.093 4.093 7 C -0.213 4.213 8 C 0.117 3.883 9 N -0.375 5.375 10 C 0.006 3.994 11 C -0.025 4.025 12 H 0.126 0.874 13 C -0.079 4.079 14 N -0.144 5.144 15 C -0.005 4.005 16 C -0.568 4.568 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.201 4.201 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.233 0.767 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.620 0.800 11.145 21.716 hybrid contribution 0.224 -0.235 -1.182 1.226 sum -18.396 0.565 9.963 20.929 Atomic orbital electron populations 1.22753 0.81245 1.02782 0.99875 1.87998 1.19352 1.27523 1.95367 1.21357 0.90337 0.84956 1.00613 1.19182 0.93153 0.99557 0.93142 1.20689 0.94255 1.06791 0.96855 1.20853 0.93875 0.97183 0.97394 1.20769 1.00155 1.09321 0.91076 1.17792 0.90781 0.93051 0.86634 1.44905 1.06323 1.81147 1.05144 1.21540 0.79064 1.02352 0.96472 1.19482 1.03268 0.87656 0.92056 0.87418 1.29124 0.91423 0.94510 0.92834 1.81057 1.10989 1.12425 1.09896 1.19155 0.83996 0.98675 0.98631 1.21096 0.93573 1.50172 0.91948 0.92497 1.24949 0.96826 0.94890 0.97238 1.69930 1.03377 1.48705 1.30780 0.86572 0.78505 0.78132 0.84752 1.20628 1.21011 1.19741 1.20412 0.92171 1.09715 0.97828 0.94105 0.89597 0.94147 0.92539 0.92624 0.86751 0.86132 0.85639 0.76716 0.91601 0.90113 0.95317 0.93950 0.92671 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.28 10.69 -35.23 -0.38 -4.66 16 3 C 0.10 1.03 6.06 36.00 0.22 1.25 16 4 C -0.05 -0.59 5.51 -104.65 -0.58 -1.17 16 5 C -0.17 -1.90 9.70 -39.55 -0.38 -2.28 16 6 C -0.07 -0.85 10.04 -39.61 -0.40 -1.25 16 7 C -0.19 -2.42 9.31 -39.38 -0.37 -2.79 16 8 C 0.22 2.96 6.65 -83.79 -0.56 2.40 16 9 N -0.75 -9.91 5.52 -58.64 -0.32 -10.24 16 10 C 0.13 1.85 4.28 -4.04 -0.02 1.83 16 11 C 0.00 -0.04 2.26 -93.41 -0.21 -0.26 16 12 H 0.11 1.70 8.14 -51.92 -0.42 1.28 16 13 C 0.24 4.65 13.45 -20.75 -0.28 4.37 16 14 N -0.47 -10.00 18.54 42.17 0.78 -9.22 16 15 C 0.03 0.75 4.42 -27.89 -0.12 0.63 16 16 C -0.53 -13.70 8.60 -34.44 -0.30 -13.99 16 17 H 0.06 1.46 7.59 -52.48 -0.40 1.07 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 20 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.18 -2.27 9.55 -39.38 -0.38 -2.64 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.11 1.10 8.06 -52.48 -0.42 0.67 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.13 1.50 6.73 -52.49 -0.35 1.15 16 33 H 0.40 5.03 8.23 -40.82 -0.34 4.69 16 34 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 35 H 0.08 1.06 7.94 -51.93 -0.41 0.65 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -30.38 341.14 -7.11 -37.48 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.69 Total: 0.75 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.35 Total: -10.96 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 1.19 Total: -43.69 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.38 Total: -4.66 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.38 -7.11 -37.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609574362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.984 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds