Wall clock time and date at job start Mon Mar 30 2020 01:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00266 * 2 1 4 4 C 1.50694 * 109.47475 * 179.97438 * 3 2 1 5 5 C 1.38307 * 119.96605 * 270.02157 * 4 3 2 6 6 C 1.38261 * 120.15068 * 180.02562 * 5 4 3 7 7 C 1.38129 * 120.07615 * 359.73889 * 6 5 4 8 8 C 1.38891 * 119.92154 * 0.49377 * 7 6 5 9 9 N 1.39678 * 120.07441 * 179.78311 * 8 7 6 10 10 C 1.46498 * 119.99747 * 0.02562 * 9 8 7 11 11 C 1.52996 * 109.47059 * 179.72192 * 10 9 8 12 12 H 1.09008 * 109.47304 * 304.99667 * 11 10 9 13 13 C 1.47199 * 109.47335 * 64.99716 * 11 10 9 14 14 N 8.63740 * 137.07538 * 301.49334 * 2 1 3 15 15 C 1.53003 * 109.47530 * 184.99929 * 11 10 9 16 16 C 1.50690 * 109.47563 * 174.99874 * 15 11 10 17 17 H 1.08004 * 119.99810 * 359.97438 * 16 15 11 18 18 C 1.37877 * 120.00273 * 179.97438 * 16 15 11 19 19 N 1.31515 * 119.99838 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00187 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.47018 * 90.00325 * 20 18 16 22 22 H 1.48496 * 109.47479 * 209.99920 * 20 18 16 23 23 H 1.48497 * 109.47400 * 330.00483 * 20 18 16 24 24 C 1.38086 * 119.96201 * 90.00175 * 4 3 2 25 25 H 1.08997 * 109.47058 * 60.00068 * 1 2 3 26 26 H 1.09004 * 109.46959 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46642 * 299.99849 * 1 2 3 28 28 H 1.08998 * 109.46881 * 59.99681 * 3 2 1 29 29 H 1.09003 * 109.47153 * 300.00416 * 3 2 1 30 30 H 1.08005 * 119.92378 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.96567 * 180.02562 * 6 5 4 32 32 H 1.08001 * 120.03796 * 180.27431 * 7 6 5 33 33 H 0.97001 * 119.99807 * 179.71805 * 9 8 7 34 34 H 1.09004 * 109.46963 * 299.71988 * 10 9 8 35 35 H 1.08994 * 109.47567 * 59.72140 * 10 9 8 36 36 H 1.08998 * 109.46886 * 295.00118 * 15 11 10 37 37 H 1.09002 * 109.46923 * 54.99368 * 15 11 10 38 38 H 0.96998 * 119.99896 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.03411 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2006 1.1317 1.1991 6 6 5.5790 1.0231 1.2041 7 6 6.2730 0.9635 0.0114 8 6 5.5855 1.0231 -1.1940 9 7 6.2845 0.9677 -2.4020 10 6 7.7444 0.8459 -2.3985 11 6 8.2557 0.7996 -3.8398 12 1 7.7538 -0.0047 -4.3778 13 6 7.9736 2.0836 -4.5020 14 7 7.7537 3.0730 -5.0159 15 6 9.7649 0.5476 -3.8378 16 6 10.2481 0.3798 -5.2552 17 1 9.5486 0.4458 -6.0756 18 6 11.5830 0.1420 -5.5050 19 7 12.4346 0.0611 -4.5060 20 14 12.1818 -0.0668 -7.2620 21 1 12.5702 1.2565 -7.8131 22 1 13.3569 -0.9746 -7.2800 23 1 11.0946 -0.6480 -8.0898 24 6 4.2005 1.1319 -1.1954 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6601 1.1747 2.1332 31 1 6.1133 0.9802 2.1417 32 1 7.3493 0.8742 0.0160 33 1 5.8029 1.0053 -3.2431 34 1 8.1794 1.7041 -1.8861 35 1 8.0315 -0.0697 -1.8816 36 1 10.2740 1.3948 -3.3783 37 1 9.9813 -0.3576 -3.2705 38 1 13.3737 -0.1066 -4.6817 39 1 3.6625 1.1748 -2.1309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609574362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:44 Heat of formation + Delta-G solvation = -23.994389 kcal Electronic energy + Delta-G solvation = -19570.974000 eV Core-core repulsion = 16477.345325 eV Total energy + Delta-G solvation = -3093.628676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.56170 -38.97654 -38.30432 -36.41246 -35.41135 -33.56622 -32.59624 -30.45377 -28.13305 -27.98319 -26.27295 -24.93772 -23.82307 -23.08129 -21.49538 -18.77615 -18.44639 -17.97901 -17.30711 -17.19969 -16.69519 -16.53091 -16.24736 -15.77443 -15.35287 -14.87677 -14.74798 -14.51856 -14.35657 -14.18606 -13.86822 -13.46889 -13.39686 -13.11497 -13.07300 -12.90808 -12.56309 -12.44074 -12.31526 -12.21658 -12.07106 -11.72135 -11.48564 -11.23131 -10.91630 -10.61619 -10.56723 -9.71582 -8.28181 -8.20989 -6.29166 0.46508 0.76766 1.39661 1.42210 1.50793 1.88537 1.91239 2.38591 2.51773 2.78360 3.12262 3.17724 3.32641 3.91256 3.98460 4.05229 4.26585 4.28083 4.38815 4.48744 4.53100 4.58697 4.60607 4.66359 4.72358 4.83759 4.87653 4.89115 5.01274 5.15950 5.44616 5.46107 5.58409 5.66664 5.76871 5.79311 5.97522 6.16296 6.25050 6.45246 6.68998 6.81570 6.86567 7.39584 8.89883 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.002961 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.491709 B = 9454.808729 C = 9793.903498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.103 3.897 4 C -0.060 4.060 5 C -0.170 4.170 6 C -0.077 4.077 7 C -0.205 4.205 8 C 0.206 3.794 9 N -0.747 5.747 10 C 0.144 3.856 11 C 0.011 3.989 12 H 0.128 0.872 13 C 0.250 3.750 14 N -0.501 5.501 15 C 0.039 3.961 16 C -0.540 4.540 17 H 0.055 0.945 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.947 3.053 21 H -0.284 1.284 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.191 4.191 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.129 0.871 33 H 0.401 0.599 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.005 0.995 37 H 0.041 0.959 38 H 0.264 0.736 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.189 -0.897 12.405 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C 0.028 3.972 4 C -0.061 4.061 5 C -0.190 4.190 6 C -0.096 4.096 7 C -0.228 4.228 8 C 0.103 3.897 9 N -0.377 5.377 10 C 0.019 3.981 11 C -0.010 4.010 12 H 0.146 0.854 13 C -0.066 4.066 14 N -0.178 5.178 15 C 0.000 4.000 16 C -0.578 4.578 17 H 0.074 0.926 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.773 3.227 21 H -0.211 1.211 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.213 4.213 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.236 0.764 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.024 0.976 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.023 0.384 11.679 23.183 hybrid contribution 0.584 -0.102 -1.284 1.414 sum -19.439 0.282 10.394 22.046 Atomic orbital electron populations 1.22941 0.79453 1.03775 1.01001 1.87944 1.21404 1.28178 1.95606 1.21405 0.89088 0.84901 1.01849 1.19520 0.94512 0.98954 0.93069 1.21006 0.94468 1.05937 0.97561 1.21162 0.94176 0.96307 0.97936 1.20966 1.00552 1.09826 0.91455 1.17947 0.91176 0.93931 0.86673 1.44751 1.05675 1.81801 1.05473 1.21326 0.79774 1.02952 0.94093 1.19377 1.00354 0.87121 0.94191 0.85391 1.29524 0.90522 0.94546 0.92011 1.81060 1.12014 1.13526 1.11176 1.18969 0.86933 0.97562 0.96507 1.21529 0.93647 1.48994 0.93655 0.92645 1.25694 0.97358 0.95103 1.00556 1.70021 1.03612 1.50063 1.32457 0.85708 0.78309 0.77803 0.80844 1.21074 1.20439 1.18849 1.20581 0.92116 1.10075 0.98553 0.93249 0.88771 0.92719 0.90803 0.91883 0.84848 0.83909 0.85310 0.76441 0.92020 0.88712 0.97631 0.94054 0.92664 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.55 10.69 -148.98 -1.59 -10.14 16 3 C 0.10 1.88 6.06 71.23 0.43 2.31 16 4 C -0.06 -1.35 5.51 -19.89 -0.11 -1.46 16 5 C -0.17 -3.57 9.70 22.29 0.22 -3.35 16 6 C -0.08 -1.64 10.04 22.25 0.22 -1.42 16 7 C -0.21 -4.99 9.31 22.40 0.21 -4.78 16 8 C 0.21 5.31 6.65 38.21 0.25 5.57 16 9 N -0.75 -19.07 5.52 -339.43 -1.87 -20.95 16 10 C 0.14 3.92 4.28 86.38 0.37 4.29 16 11 C 0.01 0.38 2.26 -12.60 -0.03 0.35 16 12 H 0.13 3.82 8.14 -2.38 -0.02 3.80 16 13 C 0.25 9.63 13.45 89.44 1.20 10.83 16 14 N -0.50 -21.30 18.54 20.01 0.37 -20.92 16 15 C 0.04 1.72 4.42 29.85 0.13 1.85 16 16 C -0.54 -27.74 8.60 25.60 0.22 -27.52 16 17 H 0.06 2.81 7.59 -2.91 -0.02 2.78 16 18 C 0.01 0.65 5.46 84.65 0.46 1.11 16 19 N -0.92 -51.98 13.29 21.45 0.28 -51.69 16 20 Si 0.95 42.72 29.54 68.60 2.03 44.74 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 24 C -0.19 -4.67 9.55 22.40 0.21 -4.46 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 29 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 30 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 32 H 0.13 2.94 6.73 -2.91 -0.02 2.92 16 33 H 0.40 9.71 8.23 -92.71 -0.76 8.95 16 34 H 0.06 1.74 7.96 -2.38 -0.02 1.72 16 35 H 0.09 2.35 7.94 -2.39 -0.02 2.33 16 36 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 39 H 0.12 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -63.90 341.14 4.54 -59.35 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.28 Total: 14.72 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 5.04 Total: -15.11 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -1.22 Total: -93.57 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.59 Total: -10.14 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -63.90 4.54 -59.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609574362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.360 kcal (2) G-P(sol) polarization free energy of solvation -63.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds