Wall clock time and date at job start Mon Mar 30 2020 01:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99783 * 2 1 4 4 C 1.50702 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.38284 * 119.92910 * 89.99453 * 4 3 2 6 6 C 1.38102 * 120.07730 * 179.97438 * 5 4 3 7 7 C 1.38905 * 119.92398 * 0.28542 * 6 5 4 8 8 N 1.39669 * 120.07711 * 179.72013 * 7 6 5 9 9 C 1.46502 * 120.00681 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47514 * 179.97438 * 9 8 7 11 11 H 1.09005 * 109.46772 * 55.00581 * 10 9 8 12 12 C 1.47198 * 109.47290 * 295.00159 * 10 9 8 13 13 N 9.08655 * 169.68415 * 186.94550 * 2 1 3 14 14 C 1.52997 * 109.46628 * 175.00097 * 10 9 8 15 15 C 1.50710 * 109.46609 * 185.00152 * 14 10 9 16 16 H 1.07993 * 120.00028 * 0.02562 * 15 14 10 17 17 C 1.37874 * 119.99988 * 179.97438 * 15 14 10 18 18 N 1.31513 * 120.00231 * 180.02562 * 17 15 14 19 19 Si 1.86810 * 120.00029 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47308 * 89.99384 * 19 17 15 21 21 H 1.48499 * 109.46936 * 209.99707 * 19 17 15 22 22 H 1.48498 * 109.46842 * 329.99441 * 19 17 15 23 23 C 1.38914 * 119.85122 * 359.43987 * 7 6 5 24 24 C 1.38104 * 119.92314 * 0.53768 * 23 7 6 25 25 H 1.09000 * 109.47341 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47252 * 300.00233 * 1 2 3 27 27 H 1.08999 * 109.47669 * 60.00117 * 1 2 3 28 28 H 1.08998 * 109.47459 * 60.00195 * 3 2 1 29 29 H 1.09005 * 109.47441 * 299.99760 * 3 2 1 30 30 H 1.08008 * 119.95755 * 0.02755 * 5 4 3 31 31 H 1.08002 * 120.03497 * 180.02562 * 6 5 4 32 32 H 0.97008 * 120.00083 * 0.02562 * 8 7 6 33 33 H 1.08995 * 109.47221 * 300.00552 * 9 8 7 34 34 H 1.09006 * 109.46597 * 60.00077 * 9 8 7 35 35 H 1.08994 * 109.47337 * 304.99907 * 14 10 9 36 36 H 1.08996 * 109.47293 * 65.00397 * 14 10 9 37 37 H 0.97005 * 119.99982 * 180.02562 * 18 17 15 38 38 H 1.07997 * 120.04003 * 180.25530 * 23 7 6 39 39 H 1.08007 * 119.96360 * 179.74357 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.1998 1.1322 -1.1994 6 6 5.5765 1.0238 -1.2035 7 6 6.2705 0.9633 -0.0017 8 7 7.6624 0.8477 -0.0022 9 6 8.3927 0.7846 1.2662 10 6 9.8917 0.6601 0.9860 11 1 10.2102 1.4794 0.3415 12 6 10.1610 -0.6234 0.3174 13 7 10.3687 -1.6152 -0.1968 14 6 10.6637 0.7196 2.3056 15 6 12.1439 0.7206 2.0219 16 1 12.4983 0.6830 1.0024 17 6 13.0455 0.7705 3.0638 18 7 14.3371 0.7719 2.8163 19 14 12.4324 0.8362 4.8272 20 1 12.2821 -0.5452 5.3508 21 1 13.4091 1.5791 5.6634 22 1 11.1186 1.5271 4.8689 23 6 5.5775 1.0239 1.2007 24 6 4.2007 1.1328 1.1976 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6592 1.1755 -2.1334 31 1 6.1126 0.9818 -2.1401 32 1 8.1456 0.8100 -0.8425 33 1 8.2041 1.6922 1.8396 34 1 8.0568 -0.0817 1.8361 35 1 10.3961 1.6296 2.8424 36 1 10.4110 -0.1488 2.9139 37 1 14.9714 0.8067 3.5494 38 1 6.1143 0.9813 2.1368 39 1 3.6609 1.1758 2.1321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766820389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:04 Heat of formation + Delta-G solvation = -2.674818 kcal Electronic energy + Delta-G solvation = -19531.139141 eV Core-core repulsion = 16438.434951 eV Total energy + Delta-G solvation = -3092.704190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.68221 -38.05853 -37.17676 -35.19520 -33.73150 -32.14825 -30.92297 -30.38799 -27.73502 -26.62239 -24.86616 -23.92595 -22.24210 -21.63867 -20.83943 -17.62344 -17.01529 -16.92646 -16.55975 -16.27228 -16.00496 -15.43844 -14.53058 -14.45794 -14.09313 -13.81316 -13.66999 -13.40354 -13.21099 -13.07600 -12.58596 -12.48145 -12.41193 -12.14633 -11.76528 -11.58044 -11.42795 -11.26870 -11.03518 -10.87011 -10.45372 -10.12823 -9.98608 -9.91963 -9.90123 -9.43212 -8.91130 -8.68543 -7.37247 -6.17517 -4.19463 1.46864 1.49575 3.22694 3.29765 3.30644 3.36143 3.42925 3.52995 3.56468 4.11503 4.32148 4.53077 4.75187 4.80475 4.99741 5.01435 5.08125 5.10502 5.16914 5.16978 5.19924 5.37988 5.41950 5.46116 5.63262 5.75691 5.79693 6.01559 6.04232 6.12350 6.32843 6.38142 6.66343 6.82122 6.84116 6.93523 6.98249 7.34145 7.54362 7.72574 8.22929 8.33360 8.84517 9.41507 10.95309 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031072 B = 0.003025 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.919722 B = 9254.631904 C = 9768.350402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.112 3.888 4 C -0.164 4.164 5 C -0.050 4.050 6 C -0.202 4.202 7 C 0.232 3.768 8 N -0.744 5.744 9 C 0.127 3.873 10 C 0.008 3.992 11 H 0.114 0.886 12 C 0.234 3.766 13 N -0.457 5.457 14 C -0.002 4.002 15 C -0.532 4.532 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.262 1.262 23 C -0.201 4.201 24 C -0.048 4.048 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.400 0.600 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.023 0.977 37 H 0.266 0.734 38 H 0.125 0.875 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.137 4.670 -3.915 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C 0.036 3.964 4 C -0.166 4.166 5 C -0.068 4.068 6 C -0.225 4.225 7 C 0.127 3.873 8 N -0.373 5.373 9 C 0.002 3.998 10 C -0.014 4.014 11 H 0.131 0.869 12 C -0.084 4.084 13 N -0.134 5.134 14 C -0.041 4.041 15 C -0.569 4.569 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.532 5.532 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.186 1.186 23 C -0.224 4.224 24 C -0.067 4.067 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.235 0.765 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -24.415 3.004 -4.409 24.991 hybrid contribution -0.067 0.552 0.845 1.011 sum -24.482 3.556 -3.565 24.994 Atomic orbital electron populations 1.22730 0.81520 1.02648 0.99774 1.88016 1.19135 1.28142 1.95325 1.21229 0.90387 0.84556 1.00188 1.19216 0.93405 1.10392 0.93590 1.20677 0.93313 0.95758 0.97097 1.20556 0.94346 1.11255 0.96345 1.17893 0.83682 0.91862 0.93889 1.44912 1.03072 1.80681 1.08587 1.21574 0.89804 1.02393 0.86018 1.19211 0.93841 0.88390 0.99934 0.86860 1.28971 0.92162 0.94605 0.92637 1.81080 1.09366 1.12030 1.10876 1.19622 0.96352 0.98195 0.89975 1.20978 0.88109 1.52369 0.95494 0.90780 1.24990 0.94722 0.94131 0.99223 1.69900 1.01141 1.49735 1.32471 0.86810 0.79202 0.78672 0.84829 1.20192 1.21177 1.18618 1.20667 0.94294 1.10757 0.96700 1.20736 0.93436 0.95438 0.97118 0.89771 0.94204 0.94236 0.92942 0.93012 0.86434 0.86211 0.76485 0.90072 0.91529 0.94032 0.95831 0.92452 0.85687 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.22 10.69 -35.23 -0.38 -4.59 16 3 C 0.11 1.05 6.06 36.01 0.22 1.27 16 4 C -0.16 -1.83 5.51 -104.59 -0.58 -2.41 16 5 C -0.05 -0.55 9.69 -39.61 -0.38 -0.93 16 6 C -0.20 -2.36 9.90 -39.38 -0.39 -2.75 16 7 C 0.23 2.90 6.65 -83.79 -0.56 2.34 16 8 N -0.74 -9.22 5.52 -58.63 -0.32 -9.54 16 9 C 0.13 1.66 4.28 -4.04 -0.02 1.64 16 10 C 0.01 0.13 2.26 -93.41 -0.21 -0.08 16 11 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 12 C 0.23 4.49 13.45 -20.75 -0.28 4.21 16 13 N -0.46 -9.82 18.54 42.17 0.78 -9.04 16 14 C 0.00 -0.05 3.49 -27.88 -0.10 -0.15 16 15 C -0.53 -13.86 9.15 -34.44 -0.32 -14.17 16 16 H 0.07 2.12 7.84 -52.49 -0.41 1.71 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 19 Si 0.88 20.12 27.47 -169.99 -4.67 15.45 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 23 C -0.20 -2.43 9.31 -39.38 -0.37 -2.79 16 24 C -0.05 -0.55 9.69 -39.61 -0.38 -0.93 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.40 4.72 8.23 -40.82 -0.34 4.38 16 33 H 0.08 0.94 7.94 -51.93 -0.41 0.52 16 34 H 0.07 0.88 7.96 -51.93 -0.41 0.47 16 35 H 0.04 0.79 7.20 -51.93 -0.37 0.41 16 36 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 38 H 0.13 1.39 6.73 -52.49 -0.35 1.03 16 39 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -31.66 337.54 -6.73 -38.39 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.66 Total: 1.53 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -2.34 Total: -11.55 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 1.23 Total: -44.33 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.38 Total: -4.59 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.66 -6.73 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766820389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.717 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds