Wall clock time and date at job start Mon Mar 30 2020 01:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99783 * 2 1 4 4 C 1.50702 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.38284 * 119.92910 * 89.99453 * 4 3 2 6 6 C 1.38102 * 120.07730 * 179.97438 * 5 4 3 7 7 C 1.38905 * 119.92398 * 0.28542 * 6 5 4 8 8 N 1.39669 * 120.07711 * 179.72013 * 7 6 5 9 9 C 1.46502 * 120.00681 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47514 * 179.97438 * 9 8 7 11 11 H 1.09005 * 109.46772 * 55.00581 * 10 9 8 12 12 C 1.47198 * 109.47290 * 295.00159 * 10 9 8 13 13 N 9.08655 * 169.68415 * 186.94550 * 2 1 3 14 14 C 1.52997 * 109.46628 * 175.00097 * 10 9 8 15 15 C 1.50710 * 109.46609 * 185.00152 * 14 10 9 16 16 H 1.07993 * 120.00028 * 0.02562 * 15 14 10 17 17 C 1.37874 * 119.99988 * 179.97438 * 15 14 10 18 18 N 1.31513 * 120.00231 * 180.02562 * 17 15 14 19 19 Si 1.86810 * 120.00029 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47308 * 89.99384 * 19 17 15 21 21 H 1.48499 * 109.46936 * 209.99707 * 19 17 15 22 22 H 1.48498 * 109.46842 * 329.99441 * 19 17 15 23 23 C 1.38914 * 119.85122 * 359.43987 * 7 6 5 24 24 C 1.38104 * 119.92314 * 0.53768 * 23 7 6 25 25 H 1.09000 * 109.47341 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47252 * 300.00233 * 1 2 3 27 27 H 1.08999 * 109.47669 * 60.00117 * 1 2 3 28 28 H 1.08998 * 109.47459 * 60.00195 * 3 2 1 29 29 H 1.09005 * 109.47441 * 299.99760 * 3 2 1 30 30 H 1.08008 * 119.95755 * 0.02755 * 5 4 3 31 31 H 1.08002 * 120.03497 * 180.02562 * 6 5 4 32 32 H 0.97008 * 120.00083 * 0.02562 * 8 7 6 33 33 H 1.08995 * 109.47221 * 300.00552 * 9 8 7 34 34 H 1.09006 * 109.46597 * 60.00077 * 9 8 7 35 35 H 1.08994 * 109.47337 * 304.99907 * 14 10 9 36 36 H 1.08996 * 109.47293 * 65.00397 * 14 10 9 37 37 H 0.97005 * 119.99982 * 180.02562 * 18 17 15 38 38 H 1.07997 * 120.04003 * 180.25530 * 23 7 6 39 39 H 1.08007 * 119.96360 * 179.74357 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.1998 1.1322 -1.1994 6 6 5.5765 1.0238 -1.2035 7 6 6.2705 0.9633 -0.0017 8 7 7.6624 0.8477 -0.0022 9 6 8.3927 0.7846 1.2662 10 6 9.8917 0.6601 0.9860 11 1 10.2102 1.4794 0.3415 12 6 10.1610 -0.6234 0.3174 13 7 10.3687 -1.6152 -0.1968 14 6 10.6637 0.7196 2.3056 15 6 12.1439 0.7206 2.0219 16 1 12.4983 0.6830 1.0024 17 6 13.0455 0.7705 3.0638 18 7 14.3371 0.7719 2.8163 19 14 12.4324 0.8362 4.8272 20 1 12.2821 -0.5452 5.3508 21 1 13.4091 1.5791 5.6634 22 1 11.1186 1.5271 4.8689 23 6 5.5775 1.0239 1.2007 24 6 4.2007 1.1328 1.1976 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6592 1.1755 -2.1334 31 1 6.1126 0.9818 -2.1401 32 1 8.1456 0.8100 -0.8425 33 1 8.2041 1.6922 1.8396 34 1 8.0568 -0.0817 1.8361 35 1 10.3961 1.6296 2.8424 36 1 10.4110 -0.1488 2.9139 37 1 14.9714 0.8067 3.5494 38 1 6.1143 0.9813 2.1368 39 1 3.6609 1.1758 2.1321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766820389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:56 Heat of formation + Delta-G solvation = -22.651835 kcal Electronic energy + Delta-G solvation = -19532.005409 eV Core-core repulsion = 16438.434951 eV Total energy + Delta-G solvation = -3093.570458 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.53463 -38.99697 -38.29392 -36.42716 -35.37481 -33.78812 -31.79029 -31.39792 -29.04528 -27.43596 -25.82393 -24.93346 -23.47897 -23.04964 -21.72465 -18.98247 -18.69761 -18.06240 -17.24376 -17.16666 -16.79669 -16.48126 -16.00935 -15.42872 -15.29045 -14.99970 -14.76843 -14.53919 -14.34862 -14.12376 -14.10779 -13.91675 -13.43994 -13.23646 -13.01911 -12.93162 -12.60855 -12.38373 -12.11031 -11.93900 -11.75508 -11.71094 -11.66312 -11.36252 -10.85964 -10.74098 -10.55900 -9.75412 -8.26578 -8.25176 -6.31407 0.62285 0.64862 1.45124 1.45497 1.56495 1.87303 1.90805 2.41106 2.50634 2.80342 3.08562 3.16034 3.38533 3.87288 4.00240 4.10621 4.24150 4.25365 4.37707 4.49877 4.54506 4.57991 4.60927 4.66757 4.76566 4.81434 4.89205 4.90626 4.97710 5.21074 5.21715 5.40331 5.46880 5.54084 5.62219 5.84202 5.99823 6.23084 6.32079 6.45533 6.68630 6.77477 6.82492 7.33335 8.91453 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031072 B = 0.003025 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.919722 B = 9254.631904 C = 9768.350402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.417 6.417 3 C 0.111 3.889 4 C -0.172 4.172 5 C -0.058 4.058 6 C -0.212 4.212 7 C 0.216 3.784 8 N -0.747 5.747 9 C 0.139 3.861 10 C 0.017 3.983 11 H 0.127 0.873 12 C 0.246 3.754 13 N -0.503 5.503 14 C -0.002 4.002 15 C -0.532 4.532 16 H 0.030 0.970 17 C 0.002 3.998 18 N -0.954 5.954 19 Si 0.947 3.053 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.219 1.219 23 C -0.211 4.211 24 C -0.057 4.057 25 H 0.090 0.910 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.401 0.599 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.265 0.735 38 H 0.134 0.866 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.212 5.720 -2.638 28.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.337 6.337 3 C 0.036 3.964 4 C -0.174 4.174 5 C -0.077 4.077 6 C -0.234 4.234 7 C 0.112 3.888 8 N -0.376 5.376 9 C 0.014 3.986 10 C -0.005 4.005 11 H 0.144 0.856 12 C -0.070 4.070 13 N -0.180 5.180 14 C -0.041 4.041 15 C -0.570 4.570 16 H 0.048 0.952 17 C -0.195 4.195 18 N -0.595 5.595 19 Si 0.769 3.231 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.141 1.141 23 C -0.234 4.234 24 C -0.075 4.075 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.236 0.764 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.152 0.848 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -27.542 4.063 -3.150 28.018 hybrid contribution 0.857 0.213 0.328 0.942 sum -26.686 4.276 -2.822 27.173 Atomic orbital electron populations 1.22906 0.79781 1.03518 1.00950 1.87959 1.21153 1.29012 1.95582 1.21300 0.89231 0.84373 1.01529 1.19552 0.94674 1.09595 0.93616 1.20940 0.93279 0.95458 0.97978 1.20757 0.94821 1.11232 0.96628 1.18036 0.83575 0.92722 0.94450 1.44809 1.03173 1.81290 1.08341 1.21449 0.86945 1.03714 0.86514 1.19262 0.96032 0.87161 0.98057 0.85559 1.29631 0.90794 0.94791 0.91786 1.81082 1.10973 1.13648 1.12314 1.19581 0.92695 0.99646 0.92200 1.21376 0.91554 1.50591 0.93467 0.95171 1.26048 0.94686 0.94070 1.04656 1.70086 1.02986 1.52442 1.33939 0.85720 0.80380 0.78813 0.78141 1.20368 1.21757 1.14061 1.20867 0.94777 1.10832 0.96913 1.20999 0.93430 0.95140 0.97973 0.89162 0.93018 0.93034 0.91592 0.91679 0.84896 0.85433 0.76402 0.87572 0.91392 0.91072 0.95259 0.92671 0.84770 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -8.30 10.69 -148.98 -1.59 -9.90 16 3 C 0.11 1.84 6.06 71.24 0.43 2.27 16 4 C -0.17 -3.52 5.51 -19.84 -0.11 -3.63 16 5 C -0.06 -1.18 9.69 22.25 0.22 -0.97 16 6 C -0.21 -4.63 9.90 22.40 0.22 -4.41 16 7 C 0.22 5.00 6.65 38.21 0.25 5.26 16 8 N -0.75 -17.00 5.52 -339.41 -1.87 -18.88 16 9 C 0.14 3.20 4.28 86.38 0.37 3.56 16 10 C 0.02 0.51 2.26 -12.60 -0.03 0.48 16 11 H 0.13 3.59 8.14 -2.38 -0.02 3.57 16 12 C 0.25 9.37 13.45 89.44 1.20 10.57 16 13 N -0.50 -21.79 18.54 20.01 0.37 -21.41 16 14 C 0.00 -0.08 3.49 29.85 0.10 0.02 16 15 C -0.53 -27.75 9.15 25.60 0.23 -27.52 16 16 H 0.03 1.78 7.84 -2.91 -0.02 1.76 16 17 C 0.00 0.12 5.47 84.65 0.46 0.58 16 18 N -0.95 -58.28 13.96 21.45 0.30 -57.98 16 19 Si 0.95 40.36 27.47 68.60 1.88 42.24 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.22 -7.75 6.54 99.48 0.65 -7.10 16 23 C -0.21 -4.60 9.31 22.40 0.21 -4.39 16 24 C -0.06 -1.16 9.69 22.25 0.22 -0.94 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 29 H 0.07 0.87 8.08 -2.38 -0.02 0.85 16 30 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.40 8.90 8.23 -92.70 -0.76 8.13 16 33 H 0.11 1.97 7.94 -2.39 -0.02 1.96 16 34 H 0.07 1.58 7.96 -2.38 -0.02 1.56 16 35 H 0.07 2.35 7.20 -2.39 -0.02 2.34 16 36 H 0.03 1.10 7.57 -2.39 -0.02 1.08 16 37 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 38 H 0.13 2.57 6.73 -2.91 -0.02 2.55 16 39 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -70.28 337.54 4.35 -65.93 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.23 Total: 17.57 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 5.03 Total: -17.58 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -1.20 Total: -98.27 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -1.59 Total: -9.90 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.88 Total: 42.24 kcal Total: -70.28 4.35 -65.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766820389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.276 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds