Wall clock time and date at job start Mon Mar 30 2020 01:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46903 * 109.47482 * 119.99820 * 2 1 3 13 13 C 1.46900 * 111.00210 * 176.04853 * 12 2 1 14 14 C 1.46898 * 110.99813 * 300.00437 * 12 2 1 15 15 C 1.50703 * 109.46822 * 169.99539 * 14 12 2 16 16 C 1.38805 * 120.17439 * 89.99888 * 15 14 12 17 17 N 1.31512 * 121.58840 * 179.97438 * 16 15 14 18 18 C 1.32763 * 121.47472 * 0.02562 * 17 16 15 19 19 C 1.40912 * 119.84913 * 359.97438 * 18 17 16 20 20 C 1.45857 * 106.45537 * 179.97438 * 19 18 17 21 21 N 1.30235 * 107.66258 * 359.97438 * 20 19 18 22 22 N 1.36828 * 133.58327 * 179.97438 * 18 17 16 23 23 C 1.46495 * 125.38608 * 359.97438 * 22 18 17 24 24 C 1.37020 * 120.18166 * 269.72738 * 15 14 12 25 25 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 27 27 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.46719 * 60.00160 * 13 12 2 30 30 H 1.08996 * 109.47138 * 180.02562 * 13 12 2 31 31 H 1.09005 * 109.46906 * 300.00616 * 13 12 2 32 32 H 1.08995 * 109.47026 * 289.99400 * 14 12 2 33 33 H 1.08995 * 109.47047 * 50.00033 * 14 12 2 34 34 H 1.07997 * 119.20558 * 0.02630 * 16 15 14 35 35 H 1.08002 * 126.16550 * 179.97438 * 20 19 18 36 36 H 1.09003 * 109.47614 * 89.99471 * 23 22 18 37 37 H 1.09001 * 109.47415 * 209.99890 * 23 22 18 38 38 H 1.09006 * 109.46914 * 329.99580 * 23 22 18 39 39 H 1.08006 * 120.91728 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 7 2.0198 -0.6925 1.1995 13 6 3.4852 -0.7944 1.1871 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8911 3.6159 16 6 3.0661 -0.7507 4.2847 17 7 3.3646 -1.4902 5.3305 18 6 2.5231 -2.4063 5.7946 19 6 1.2790 -2.6004 5.1620 20 6 0.6011 -3.6601 5.9002 21 7 1.3897 -4.0356 6.8662 22 7 2.5738 -3.2923 6.8360 23 6 3.6924 -3.4402 7.7703 24 6 0.9459 -1.8164 4.0511 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.7087 1.1613 -3.4844 29 1 3.9186 0.2053 1.1592 30 1 3.8210 -1.3115 2.0859 31 1 3.8031 -1.3530 0.3066 32 1 2.0519 0.9346 2.5280 33 1 0.4723 0.1323 2.3563 34 1 3.7778 -0.0159 3.9385 35 1 -0.3783 -4.0610 5.6846 36 1 3.5463 -2.7740 8.6206 37 1 3.7393 -4.4714 8.1206 38 1 4.6240 -3.1854 7.2650 39 1 -0.0023 -1.9397 3.5490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876690967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:41 Heat of formation + Delta-G solvation = 115.566730 kcal Electronic energy + Delta-G solvation = -20745.173234 eV Core-core repulsion = 17689.889133 eV Total energy + Delta-G solvation = -3055.284100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49690 -38.57447 -36.70018 -33.89446 -33.01921 -31.67547 -30.38225 -29.00100 -27.45276 -26.23518 -24.64531 -24.08170 -23.21656 -21.34352 -20.86139 -19.37525 -17.66277 -16.90637 -16.22438 -15.87522 -15.76681 -15.12553 -14.26120 -14.22894 -14.09415 -13.83439 -13.34200 -13.28660 -12.89659 -12.66422 -12.39606 -12.21565 -12.04015 -11.77104 -11.14710 -11.03564 -10.98611 -10.76913 -10.67448 -10.34458 -10.13061 -10.05282 -9.89707 -9.32642 -8.92649 -8.91209 -8.45037 -8.09743 -7.20649 -6.02814 -4.07302 0.83904 1.41845 2.13258 2.44081 3.31521 3.35977 3.38998 3.84027 4.16884 4.32174 4.40661 4.65124 4.86704 5.06652 5.09244 5.12845 5.22854 5.30928 5.33568 5.38707 5.53887 5.71838 5.90923 6.08548 6.20308 6.28129 6.34604 6.55164 6.60135 6.76691 6.81726 6.85508 7.01783 7.11843 7.41580 7.48349 7.68444 7.81121 7.95825 8.16775 8.29518 8.56520 8.98823 9.57857 11.03892 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.003771 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.086193 B = 7424.254095 C = 7511.956832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.532 5.532 13 C 0.035 3.965 14 C 0.094 3.906 15 C -0.153 4.153 16 C 0.178 3.822 17 N -0.508 5.508 18 C 0.304 3.696 19 C -0.228 4.228 20 C 0.086 3.914 21 N -0.249 5.249 22 N -0.402 5.402 23 C 0.116 3.884 24 C 0.022 3.978 25 H 0.035 0.965 26 H 0.009 0.991 27 H 0.085 0.915 28 H 0.261 0.739 29 H 0.013 0.987 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.200 0.800 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 -4.586 16.366 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.017 0.983 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.204 1.204 11 H -0.202 1.202 12 N -0.257 5.257 13 C -0.113 4.113 14 C -0.035 4.035 15 C -0.157 4.157 16 C 0.009 3.991 17 N -0.223 5.223 18 C 0.066 3.934 19 C -0.237 4.237 20 C -0.113 4.113 21 N -0.061 5.061 22 N -0.194 5.194 23 C -0.026 4.026 24 C -0.007 4.007 25 H 0.054 0.946 26 H 0.028 0.972 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.178 0.822 35 H 0.217 0.783 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.088 -5.702 17.817 18.823 hybrid contribution -0.127 0.770 -1.927 2.079 sum 1.961 -4.932 15.890 16.753 Atomic orbital electron populations 1.21872 0.97711 0.99698 0.99943 1.19264 0.92339 0.92033 0.85693 0.98279 1.21111 1.31112 1.12319 0.89723 0.91923 1.24918 0.95186 0.95065 0.98989 1.69877 1.36855 1.23013 1.23547 0.86588 0.79094 0.79778 0.82115 1.21370 1.20352 1.20229 1.62190 1.09421 1.52497 1.01573 1.22260 0.88769 0.99110 1.01190 1.20980 1.01664 0.92952 0.87889 1.20475 0.95439 1.00479 0.99304 1.22675 0.94421 0.94088 0.87898 1.66765 1.33145 1.07136 1.15205 1.18968 0.91857 0.92280 0.90316 1.20517 0.97259 1.03851 1.02118 1.25026 0.99524 0.94759 0.91957 1.76648 0.92760 1.15528 1.21147 1.47973 1.15224 1.30493 1.25715 1.21719 0.85923 1.03199 0.91721 1.20672 0.99240 0.90024 0.90767 0.94615 0.97220 0.89601 0.92919 0.96815 0.93898 0.90608 0.94792 0.89551 0.82178 0.78342 0.91512 0.89756 0.89421 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.76 37.16 0.33 -2.79 16 2 C 0.21 5.13 2.06 -68.87 -0.14 4.99 16 3 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 4 C -0.50 -13.43 7.93 -34.44 -0.27 -13.70 16 5 H 0.06 1.67 6.39 -52.49 -0.34 1.34 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -24.91 11.32 55.43 0.63 -24.29 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.53 -10.85 4.61 -237.74 -1.10 -11.95 16 13 C 0.04 0.67 8.90 60.06 0.53 1.21 16 14 C 0.09 1.57 4.94 -4.98 -0.02 1.55 16 15 C -0.15 -2.30 4.86 -104.85 -0.51 -2.81 16 16 C 0.18 2.58 9.04 -17.48 -0.16 2.42 16 17 N -0.51 -7.80 10.40 -12.34 -0.13 -7.93 16 18 C 0.30 4.62 7.97 -156.11 -1.24 3.38 16 19 C -0.23 -3.24 6.38 -105.18 -0.67 -3.91 16 20 C 0.09 1.03 12.29 -15.18 -0.19 0.84 16 21 N -0.25 -3.31 12.40 31.85 0.39 -2.92 16 22 N -0.40 -5.48 4.04 -67.21 -0.27 -5.75 16 23 C 0.12 1.11 11.44 59.84 0.68 1.79 16 24 C 0.02 0.31 9.83 -39.37 -0.39 -0.08 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 27 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.73 5.89 -51.93 -0.31 0.42 16 31 H 0.08 1.57 6.23 -51.93 -0.32 1.24 16 32 H 0.03 0.55 8.07 -51.93 -0.42 0.14 16 33 H 0.09 1.43 5.77 -51.93 -0.30 1.13 16 34 H 0.16 2.03 7.97 -52.49 -0.42 1.61 16 35 H 0.20 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 319.20 15.07 4.81 4.81 Total: -1.00 -30.68 319.20 -8.09 -38.77 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.26 Total: -1.15 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.15 Total: -5.58 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.47 Total: -52.83 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.68 -8.09 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876690967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.334 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds