Wall clock time and date at job start Mon Mar 30 2020 01:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46903 * 109.47482 * 119.99820 * 2 1 3 13 13 C 1.46900 * 111.00210 * 176.04853 * 12 2 1 14 14 C 1.46898 * 110.99813 * 300.00437 * 12 2 1 15 15 C 1.50703 * 109.46822 * 169.99539 * 14 12 2 16 16 C 1.38805 * 120.17439 * 89.99888 * 15 14 12 17 17 N 1.31512 * 121.58840 * 179.97438 * 16 15 14 18 18 C 1.32763 * 121.47472 * 0.02562 * 17 16 15 19 19 C 1.40912 * 119.84913 * 359.97438 * 18 17 16 20 20 C 1.45857 * 106.45537 * 179.97438 * 19 18 17 21 21 N 1.30235 * 107.66258 * 359.97438 * 20 19 18 22 22 N 1.36828 * 133.58327 * 179.97438 * 18 17 16 23 23 C 1.46495 * 125.38608 * 359.97438 * 22 18 17 24 24 C 1.37020 * 120.18166 * 269.72738 * 15 14 12 25 25 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 27 27 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.46719 * 60.00160 * 13 12 2 30 30 H 1.08996 * 109.47138 * 180.02562 * 13 12 2 31 31 H 1.09005 * 109.46906 * 300.00616 * 13 12 2 32 32 H 1.08995 * 109.47026 * 289.99400 * 14 12 2 33 33 H 1.08995 * 109.47047 * 50.00033 * 14 12 2 34 34 H 1.07997 * 119.20558 * 0.02630 * 16 15 14 35 35 H 1.08002 * 126.16550 * 179.97438 * 20 19 18 36 36 H 1.09003 * 109.47614 * 89.99471 * 23 22 18 37 37 H 1.09001 * 109.47415 * 209.99890 * 23 22 18 38 38 H 1.09006 * 109.46914 * 329.99580 * 23 22 18 39 39 H 1.08006 * 120.91728 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 7 2.0198 -0.6925 1.1995 13 6 3.4852 -0.7944 1.1871 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8911 3.6159 16 6 3.0661 -0.7507 4.2847 17 7 3.3646 -1.4902 5.3305 18 6 2.5231 -2.4063 5.7946 19 6 1.2790 -2.6004 5.1620 20 6 0.6011 -3.6601 5.9002 21 7 1.3897 -4.0356 6.8662 22 7 2.5738 -3.2923 6.8360 23 6 3.6924 -3.4402 7.7703 24 6 0.9459 -1.8164 4.0511 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.7087 1.1613 -3.4844 29 1 3.9186 0.2053 1.1592 30 1 3.8210 -1.3115 2.0859 31 1 3.8031 -1.3530 0.3066 32 1 2.0519 0.9346 2.5280 33 1 0.4723 0.1323 2.3563 34 1 3.7778 -0.0159 3.9385 35 1 -0.3783 -4.0610 5.6846 36 1 3.5463 -2.7740 8.6206 37 1 3.7393 -4.4714 8.1206 38 1 4.6240 -3.1854 7.2650 39 1 -0.0023 -1.9397 3.5490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876690967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:40 Heat of formation + Delta-G solvation = 96.366417 kcal Electronic energy + Delta-G solvation = -20746.005822 eV Core-core repulsion = 17689.889133 eV Total energy + Delta-G solvation = -3056.116689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.52812 -39.77094 -38.20815 -35.13694 -34.58923 -32.92714 -31.64061 -30.66520 -28.70427 -27.48945 -26.41443 -25.23331 -24.62344 -22.66308 -21.83030 -21.06872 -18.66557 -18.42963 -17.75197 -17.19410 -16.80153 -16.69033 -15.82064 -15.62865 -15.43426 -14.95865 -14.68129 -14.27144 -14.14549 -14.02446 -13.74544 -13.47644 -13.22738 -13.11195 -12.89395 -12.69775 -12.61351 -12.43603 -12.05721 -12.02633 -11.91949 -11.67714 -11.34404 -10.82653 -10.48720 -10.43890 -9.98750 -9.19620 -8.84604 -8.07271 -6.18229 -0.20681 0.29502 1.21037 1.45234 1.46235 1.47007 1.53603 2.45024 2.71708 3.20493 3.21433 3.34567 3.57189 3.67329 3.85035 4.04749 4.24807 4.30822 4.39470 4.49667 4.58797 4.63761 4.64809 4.73961 4.78247 4.82165 5.01264 5.10815 5.13910 5.31135 5.33368 5.40291 5.57493 5.58526 5.77112 5.83722 5.86531 6.32837 6.41661 6.43662 6.78078 6.88090 6.96516 7.50803 8.97976 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.003771 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.086193 B = 7424.254095 C = 7511.956832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.217 3.783 3 H -0.032 1.032 4 C -0.519 4.519 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.273 1.273 12 N -0.538 5.538 13 C 0.041 3.959 14 C 0.100 3.900 15 C -0.164 4.164 16 C 0.176 3.824 17 N -0.521 5.521 18 C 0.284 3.716 19 C -0.242 4.242 20 C 0.097 3.903 21 N -0.264 5.264 22 N -0.409 5.409 23 C 0.108 3.892 24 C 0.027 3.973 25 H 0.032 0.968 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.261 0.739 29 H 0.014 0.986 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.089 0.911 34 H 0.174 0.826 35 H 0.239 0.761 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.069 -5.670 17.342 18.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.110 3.890 3 H -0.015 1.015 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.780 3.220 9 H -0.211 1.211 10 H -0.199 1.199 11 H -0.199 1.199 12 N -0.263 5.263 13 C -0.107 4.107 14 C -0.028 4.028 15 C -0.169 4.169 16 C 0.007 3.993 17 N -0.235 5.235 18 C 0.045 3.955 19 C -0.252 4.252 20 C -0.101 4.101 21 N -0.076 5.076 22 N -0.201 5.201 23 C -0.032 4.032 24 C -0.002 4.002 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.107 0.893 34 H 0.191 0.809 35 H 0.255 0.745 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.899 -6.803 18.829 20.111 hybrid contribution -0.058 1.085 -2.121 2.383 sum 1.841 -5.718 16.708 17.756 Atomic orbital electron populations 1.21682 0.96997 0.99429 0.99978 1.19055 0.92863 0.90275 0.86813 1.01500 1.21414 1.31000 1.12227 0.91062 0.92501 1.25633 0.95439 0.95744 1.01663 1.70002 1.37754 1.24124 1.24011 0.85667 0.78664 0.78730 0.78890 1.21071 1.19884 1.19868 1.62100 1.10086 1.52424 1.01651 1.22186 0.88189 0.99076 1.01251 1.20925 1.01645 0.93316 0.86903 1.20279 0.96269 1.01209 0.99105 1.22878 0.94556 0.94154 0.87693 1.66794 1.33541 1.07625 1.15589 1.19330 0.92447 0.92607 0.91082 1.20778 0.97435 1.04626 1.02329 1.25675 1.00506 0.93409 0.90551 1.76646 0.93049 1.16019 1.21905 1.48346 1.15972 1.30030 1.25756 1.21969 0.84993 1.04678 0.91525 1.20870 0.99579 0.89215 0.90523 0.94843 0.94415 0.92331 0.92997 0.96742 0.91686 0.92677 0.94334 0.89320 0.80864 0.74501 0.90273 0.88042 0.89272 0.82462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.76 71.98 0.63 -5.03 16 2 C 0.22 10.53 2.06 44.17 0.09 10.62 16 3 H -0.03 -1.76 8.14 -2.38 -0.02 -1.78 16 4 C -0.52 -27.82 7.93 25.60 0.20 -27.62 16 5 H 0.06 3.06 6.39 -2.91 -0.02 3.04 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -51.80 11.32 21.45 0.24 -51.56 16 8 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 9 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.54 -21.60 4.61 -906.06 -4.18 -25.78 16 13 C 0.04 1.56 8.90 127.69 1.14 2.69 16 14 C 0.10 3.24 4.94 85.56 0.42 3.66 16 15 C -0.16 -4.68 4.86 -20.01 -0.10 -4.78 16 16 C 0.18 4.86 9.04 84.88 0.77 5.63 16 17 N -0.52 -15.34 10.40 -192.96 -2.01 -17.34 16 18 C 0.28 8.22 7.97 134.12 1.07 9.29 16 19 C -0.24 -6.38 6.38 -20.23 -0.13 -6.51 16 20 C 0.10 2.05 12.29 86.90 1.07 3.12 16 21 N -0.26 -6.47 12.40 -53.15 -0.66 -7.13 16 22 N -0.41 -10.47 4.04 -366.54 -1.48 -11.95 16 23 C 0.11 1.90 11.44 127.77 1.46 3.36 16 24 C 0.03 0.71 9.83 22.41 0.22 0.93 16 25 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.04 1.48 6.20 -2.39 -0.01 1.46 16 27 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 28 H 0.26 14.08 8.31 -92.70 -0.77 13.30 16 29 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 2.14 5.89 -2.39 -0.01 2.12 16 31 H 0.05 2.28 6.23 -2.38 -0.01 2.27 16 32 H 0.04 1.22 8.07 -2.39 -0.02 1.20 16 33 H 0.09 2.80 5.77 -2.39 -0.01 2.78 16 34 H 0.17 4.16 7.97 -2.91 -0.02 4.14 16 35 H 0.24 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -65.25 319.20 2.29 -62.96 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.05 Total: 9.11 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 7.29 Total: -3.43 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -8.08 Total: -113.77 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.25 2.29 -62.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876690967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.328 kcal (2) G-P(sol) polarization free energy of solvation -65.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds