Wall clock time and date at job start Mon Mar 30 2020 01:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46958 * 2 1 4 4 C 1.34306 * 126.59856 * 265.04508 * 3 2 1 5 5 N 1.37093 * 109.80335 * 179.97438 * 4 3 2 6 6 H 0.97008 * 124.98732 * 180.02562 * 5 4 3 7 7 C 1.36773 * 110.02440 * 0.02562 * 5 4 3 8 8 N 1.33236 * 134.29470 * 179.97438 * 7 5 4 9 9 C 1.31517 * 120.71014 * 179.97438 * 8 7 5 10 10 N 1.32105 * 122.72116 * 0.02562 * 9 8 7 11 11 C 1.32968 * 121.02749 * 359.97438 * 10 9 8 12 12 N 1.38321 * 120.83550 * 180.02562 * 11 10 9 13 13 C 1.46896 * 111.00360 * 300.13305 * 12 11 10 14 14 C 1.53002 * 109.47466 * 284.65957 * 13 12 11 15 15 C 1.46899 * 111.00007 * 64.08938 * 12 11 10 16 16 C 1.50699 * 109.47431 * 165.11677 * 15 12 11 17 17 H 1.08003 * 119.99453 * 3.86134 * 16 15 12 18 18 C 1.37876 * 120.00541 * 183.86726 * 16 15 12 19 19 N 1.31516 * 119.99647 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00376 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46898 * 59.99821 * 20 18 16 22 22 H 1.48499 * 109.47074 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46739 * 299.99838 * 20 18 16 24 24 C 1.40332 * 118.32648 * 359.74715 * 11 10 9 25 25 H 1.09002 * 109.47181 * 59.99738 * 1 2 3 26 26 H 1.09007 * 109.47180 * 300.00302 * 1 2 3 27 27 H 1.08994 * 109.47405 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46820 * 120.00059 * 2 1 3 29 29 H 1.09003 * 109.46779 * 239.99975 * 2 1 3 30 30 H 1.08001 * 125.10075 * 359.93882 * 4 3 2 31 31 H 1.08000 * 118.63941 * 179.97438 * 9 8 7 32 32 H 1.08999 * 109.47149 * 44.65752 * 13 12 11 33 33 H 1.09000 * 109.47457 * 164.65706 * 13 12 11 34 34 H 1.09000 * 109.46766 * 305.38571 * 14 13 12 35 35 H 1.09002 * 109.47033 * 65.38314 * 14 13 12 36 36 H 1.08992 * 109.47424 * 185.38482 * 14 13 12 37 37 H 1.09000 * 109.46965 * 285.11210 * 15 12 11 38 38 H 1.08996 * 109.47592 * 45.11594 * 15 12 11 39 39 H 0.96996 * 120.00112 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3870 2.1447 -1.0742 5 7 2.7916 3.3937 -0.6796 6 1 3.0941 4.0951 -1.2776 7 6 2.7063 3.5056 0.6809 8 7 2.9699 4.4779 1.5528 9 6 2.7855 4.2923 2.8417 10 7 2.3374 3.1549 3.3425 11 6 2.0461 2.1258 2.5526 12 7 1.5768 0.9369 3.0812 13 6 2.5482 0.3575 4.0185 14 6 3.7054 -0.2643 3.2342 15 6 0.2711 1.1270 3.7269 16 6 -0.3731 -0.2149 3.9623 17 1 0.1624 -1.1209 3.7197 18 6 -1.6460 -0.2861 4.4873 19 7 -2.2979 0.8172 4.7831 20 14 -2.4448 -1.9494 4.7784 21 1 -1.6195 -2.7348 5.7309 22 1 -3.8031 -1.7537 5.3457 23 1 -2.5464 -2.6818 3.4906 24 6 2.2213 2.2782 1.1686 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.3583 1.7951 -2.0957 31 1 3.0104 5.1031 3.5188 32 1 2.9320 1.1396 4.6735 33 1 2.0608 -0.4115 4.6178 34 1 3.3118 -0.9786 2.5111 35 1 4.2518 0.5198 2.7099 36 1 4.3770 -0.7769 3.9227 37 1 0.4082 1.6364 4.6807 38 1 -0.3690 1.7291 3.0821 39 1 -3.1933 0.7672 5.1528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892787522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:06 Heat of formation + Delta-G solvation = 84.485910 kcal Electronic energy + Delta-G solvation = -21852.798706 eV Core-core repulsion = 18796.166840 eV Total energy + Delta-G solvation = -3056.631866 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59125 -38.68850 -36.86601 -33.71483 -32.74802 -31.98094 -30.39865 -29.76541 -28.23462 -26.51087 -23.54976 -23.28538 -22.90985 -22.43011 -20.59778 -18.89265 -18.36689 -16.80502 -16.32057 -15.83859 -15.36284 -14.68799 -14.62519 -14.16158 -13.93520 -13.60105 -13.47244 -13.01346 -12.70681 -12.60603 -12.39273 -12.13301 -11.78466 -11.36238 -11.04893 -10.94296 -10.84760 -10.54349 -10.53612 -10.31936 -10.21371 -10.13584 -9.71427 -9.35232 -8.80552 -8.68728 -8.46294 -7.71523 -7.57787 -6.02976 -4.05123 1.18038 1.72734 2.83915 2.89358 3.33617 3.38175 3.40208 4.26543 4.30686 4.50808 4.62130 4.83549 4.98688 5.27350 5.33031 5.46231 5.52787 5.73139 5.77380 5.93211 6.01608 6.05410 6.09625 6.17551 6.33724 6.46802 6.51520 6.58637 6.68132 6.74935 6.96066 7.03848 7.08637 7.22252 7.25163 7.38263 7.71437 7.78954 7.98464 8.10657 8.49794 8.64406 9.00626 9.58178 11.07667 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.006531 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.891080 B = 4286.174237 C = 4720.285373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 C -0.101 4.101 4 C 0.022 3.978 5 N -0.576 5.576 6 H 0.417 0.583 7 C 0.314 3.686 8 N -0.554 5.554 9 C 0.324 3.676 10 N -0.572 5.572 11 C 0.428 3.572 12 N -0.486 5.486 13 C 0.058 3.942 14 C -0.143 4.143 15 C 0.208 3.792 16 C -0.506 4.506 17 H 0.066 0.934 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.276 1.276 24 C -0.184 4.184 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.176 0.824 31 H 0.191 0.809 32 H 0.040 0.960 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.052 0.948 37 H 0.006 0.994 38 H 0.028 0.972 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.301 1.570 -10.292 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 C -0.110 4.110 4 C -0.101 4.101 5 N -0.184 5.184 6 H 0.254 0.746 7 C 0.074 3.926 8 N -0.276 5.276 9 C 0.032 3.968 10 N -0.293 5.293 11 C 0.186 3.814 12 N -0.210 5.210 13 C -0.069 4.069 14 C -0.201 4.201 15 C 0.085 3.915 16 C -0.545 4.545 17 H 0.084 0.916 18 C -0.143 4.143 19 N -0.535 5.535 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.201 1.201 24 C -0.196 4.196 25 H 0.056 0.944 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.193 0.807 31 H 0.208 0.792 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.024 0.976 38 H 0.046 0.954 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.293 2.124 -10.136 14.601 hybrid contribution -0.532 -0.317 -0.050 0.621 sum 9.761 1.807 -10.186 14.223 Atomic orbital electron populations 1.21657 0.94476 1.01519 1.02073 1.19927 0.96255 0.90093 1.02207 1.20286 1.04010 0.97060 0.89609 1.21650 1.05271 0.83909 0.99312 1.41328 1.58854 1.14337 1.03885 0.74620 1.18395 0.97374 0.91275 0.85554 1.67346 1.24394 1.32400 1.03420 1.24359 0.90809 0.94003 0.87598 1.68766 1.17660 1.01676 1.41196 1.20080 0.84373 0.88808 0.88093 1.60334 1.05438 1.17341 1.37899 1.22062 0.92151 0.99154 0.93486 1.21797 0.97606 1.00367 1.00340 1.19739 0.81296 0.97851 0.92660 1.21024 0.99778 0.92106 1.41571 0.91592 1.24956 0.97076 0.96630 0.95675 1.69961 1.12849 1.26948 1.43699 0.86562 0.78321 0.83981 0.78557 1.20234 1.21451 1.20103 1.20173 1.09076 0.96000 0.94324 0.94384 0.90733 0.92897 0.89355 0.92574 0.80733 0.79216 0.94125 0.88919 0.91864 0.94387 0.92941 0.97599 0.95374 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.89 37.16 0.37 -1.95 16 2 C -0.05 -0.71 6.34 -27.88 -0.18 -0.88 16 3 C -0.10 -1.59 5.57 -102.83 -0.57 -2.17 16 4 C 0.02 0.27 11.76 -16.59 -0.19 0.07 16 5 N -0.58 -7.44 6.03 -12.14 -0.07 -7.52 16 6 H 0.42 3.96 8.96 -40.82 -0.37 3.59 16 7 C 0.31 5.39 8.48 -155.84 -1.32 4.06 16 8 N -0.55 -9.63 10.47 -13.90 -0.15 -9.78 16 9 C 0.32 5.64 12.23 -92.12 -1.13 4.51 16 10 N -0.57 -11.63 9.63 -13.67 -0.13 -11.76 16 11 C 0.43 8.86 4.68 -154.74 -0.72 8.14 16 12 N -0.49 -10.44 3.83 -174.23 -0.67 -11.10 16 13 C 0.06 1.14 5.49 -3.83 -0.02 1.12 16 14 C -0.14 -2.31 9.95 37.16 0.37 -1.94 16 15 C 0.21 5.37 4.55 -4.98 -0.02 5.35 16 16 C -0.51 -13.57 8.39 -34.44 -0.29 -13.86 16 17 H 0.07 1.72 7.50 -52.48 -0.39 1.32 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 20 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.18 -3.45 6.35 -105.00 -0.67 -4.12 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.55 8.14 -51.92 -0.42 1.12 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.49 6.97 -51.93 -0.36 1.13 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.19 2.56 8.06 -52.49 -0.42 2.14 16 32 H 0.04 0.81 7.48 -51.93 -0.39 0.42 16 33 H 0.09 1.90 6.89 -51.93 -0.36 1.54 16 34 H 0.06 1.00 7.40 -51.93 -0.38 0.61 16 35 H 0.04 0.62 7.83 -51.93 -0.41 0.22 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.01 0.17 8.07 -51.93 -0.42 -0.25 16 38 H 0.03 0.81 7.99 -51.93 -0.41 0.40 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -31.42 327.46 -10.43 -41.85 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.59 Total: 3.00 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -4.48 Total: -0.15 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: -0.28 Total: -65.72 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.42 -10.43 -41.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892787522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.336 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds