Wall clock time and date at job start Mon Mar 30 2020 01:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46958 * 2 1 4 4 C 1.34306 * 126.59856 * 265.04508 * 3 2 1 5 5 N 1.37093 * 109.80335 * 179.97438 * 4 3 2 6 6 H 0.97008 * 124.98732 * 180.02562 * 5 4 3 7 7 C 1.36773 * 110.02440 * 0.02562 * 5 4 3 8 8 N 1.33236 * 134.29470 * 179.97438 * 7 5 4 9 9 C 1.31517 * 120.71014 * 179.97438 * 8 7 5 10 10 N 1.32105 * 122.72116 * 0.02562 * 9 8 7 11 11 C 1.32968 * 121.02749 * 359.97438 * 10 9 8 12 12 N 1.38321 * 120.83550 * 180.02562 * 11 10 9 13 13 C 1.46896 * 111.00360 * 300.13305 * 12 11 10 14 14 C 1.53002 * 109.47466 * 284.65957 * 13 12 11 15 15 C 1.46899 * 111.00007 * 64.08938 * 12 11 10 16 16 C 1.50699 * 109.47431 * 165.11677 * 15 12 11 17 17 H 1.08003 * 119.99453 * 3.86134 * 16 15 12 18 18 C 1.37876 * 120.00541 * 183.86726 * 16 15 12 19 19 N 1.31516 * 119.99647 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00376 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46898 * 59.99821 * 20 18 16 22 22 H 1.48499 * 109.47074 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46739 * 299.99838 * 20 18 16 24 24 C 1.40332 * 118.32648 * 359.74715 * 11 10 9 25 25 H 1.09002 * 109.47181 * 59.99738 * 1 2 3 26 26 H 1.09007 * 109.47180 * 300.00302 * 1 2 3 27 27 H 1.08994 * 109.47405 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46820 * 120.00059 * 2 1 3 29 29 H 1.09003 * 109.46779 * 239.99975 * 2 1 3 30 30 H 1.08001 * 125.10075 * 359.93882 * 4 3 2 31 31 H 1.08000 * 118.63941 * 179.97438 * 9 8 7 32 32 H 1.08999 * 109.47149 * 44.65752 * 13 12 11 33 33 H 1.09000 * 109.47457 * 164.65706 * 13 12 11 34 34 H 1.09000 * 109.46766 * 305.38571 * 14 13 12 35 35 H 1.09002 * 109.47033 * 65.38314 * 14 13 12 36 36 H 1.08992 * 109.47424 * 185.38482 * 14 13 12 37 37 H 1.09000 * 109.46965 * 285.11210 * 15 12 11 38 38 H 1.08996 * 109.47592 * 45.11594 * 15 12 11 39 39 H 0.96996 * 120.00112 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3870 2.1447 -1.0742 5 7 2.7916 3.3937 -0.6796 6 1 3.0941 4.0951 -1.2776 7 6 2.7063 3.5056 0.6809 8 7 2.9699 4.4779 1.5528 9 6 2.7855 4.2923 2.8417 10 7 2.3374 3.1549 3.3425 11 6 2.0461 2.1258 2.5526 12 7 1.5768 0.9369 3.0812 13 6 2.5482 0.3575 4.0185 14 6 3.7054 -0.2643 3.2342 15 6 0.2711 1.1270 3.7269 16 6 -0.3731 -0.2149 3.9623 17 1 0.1624 -1.1209 3.7197 18 6 -1.6460 -0.2861 4.4873 19 7 -2.2979 0.8172 4.7831 20 14 -2.4448 -1.9494 4.7784 21 1 -1.6195 -2.7348 5.7309 22 1 -3.8031 -1.7537 5.3457 23 1 -2.5464 -2.6818 3.4906 24 6 2.2213 2.2782 1.1686 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.3583 1.7951 -2.0957 31 1 3.0104 5.1031 3.5188 32 1 2.9320 1.1396 4.6735 33 1 2.0608 -0.4115 4.6178 34 1 3.3118 -0.9786 2.5111 35 1 4.2518 0.5198 2.7099 36 1 4.3770 -0.7769 3.9227 37 1 0.4082 1.6364 4.6807 38 1 -0.3690 1.7291 3.0821 39 1 -3.1933 0.7672 5.1528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892787522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:05 Heat of formation + Delta-G solvation = 65.774097 kcal Electronic energy + Delta-G solvation = -21853.610111 eV Core-core repulsion = 18796.166840 eV Total energy + Delta-G solvation = -3057.443271 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.88005 -40.06916 -38.41556 -35.09202 -34.67221 -33.42245 -31.83661 -31.31805 -29.55565 -28.36180 -25.08246 -24.62486 -24.28909 -24.12502 -22.15560 -20.17861 -19.62016 -18.52254 -18.03476 -17.24568 -16.95015 -16.36749 -16.04594 -15.59285 -15.57205 -14.86650 -14.74290 -14.49996 -14.30685 -14.00962 -13.94797 -13.82726 -13.03315 -12.90438 -12.79583 -12.70465 -12.40699 -12.24560 -12.03382 -11.90841 -11.81352 -11.56508 -11.32839 -11.21048 -10.60389 -10.27319 -10.00199 -9.39517 -8.84792 -8.17634 -6.28259 -0.20010 0.34355 1.44388 1.48043 1.55529 1.68556 1.75822 2.41563 2.83821 2.88863 3.16393 3.35622 3.56520 3.83258 3.95790 4.18466 4.27444 4.42120 4.52023 4.59458 4.70492 4.79852 4.82973 4.84775 4.95615 5.01943 5.09655 5.17045 5.24347 5.27082 5.35334 5.42848 5.67748 5.68118 5.76969 5.87729 5.95447 6.06094 6.12877 6.61110 6.64577 6.84792 7.25257 7.40617 8.94023 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.006531 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.891080 B = 4286.174237 C = 4720.285373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.038 4.038 3 C -0.145 4.145 4 C 0.071 3.929 5 N -0.557 5.557 6 H 0.437 0.563 7 C 0.296 3.704 8 N -0.548 5.548 9 C 0.309 3.691 10 N -0.601 5.601 11 C 0.392 3.608 12 N -0.476 5.476 13 C 0.057 3.943 14 C -0.125 4.125 15 C 0.236 3.764 16 C -0.511 4.511 17 H 0.073 0.927 18 C 0.003 3.997 19 N -0.938 5.938 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.288 1.288 23 H -0.263 1.263 24 C -0.200 4.200 25 H 0.057 0.943 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.233 0.767 31 H 0.222 0.778 32 H 0.027 0.973 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.032 0.968 36 H 0.078 0.922 37 H -0.035 1.035 38 H -0.014 1.014 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.592 0.357 -13.286 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.076 4.076 3 C -0.153 4.153 4 C -0.053 4.053 5 N -0.166 5.166 6 H 0.278 0.722 7 C 0.054 3.946 8 N -0.269 5.269 9 C 0.018 3.982 10 N -0.322 5.322 11 C 0.151 3.849 12 N -0.199 5.199 13 C -0.070 4.070 14 C -0.183 4.183 15 C 0.111 3.889 16 C -0.550 4.550 17 H 0.091 0.909 18 C -0.195 4.195 19 N -0.578 5.578 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.214 1.214 23 H -0.188 1.188 24 C -0.212 4.212 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.250 0.750 31 H 0.238 0.762 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.097 0.903 37 H -0.017 1.017 38 H 0.004 0.996 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.629 0.930 -13.157 17.584 hybrid contribution -0.877 0.176 0.761 1.174 sum 10.752 1.106 -12.396 16.446 Atomic orbital electron populations 1.21577 0.96136 1.01109 1.00272 1.19835 0.94630 0.90144 1.02991 1.20469 1.07372 0.97903 0.89548 1.22483 1.00010 0.82193 1.00632 1.41431 1.57475 1.15289 1.02377 0.72171 1.18683 0.97795 0.90782 0.87298 1.67419 1.23794 1.32285 1.03411 1.24936 0.90893 0.93951 0.88390 1.68665 1.18535 1.02716 1.42309 1.20180 0.86662 0.88732 0.89341 1.60235 1.04027 1.18539 1.37144 1.22100 0.92832 0.98343 0.93680 1.21643 0.96237 1.00053 1.00377 1.19162 0.83375 0.96454 0.89899 1.21289 1.00094 0.92471 1.41100 0.90895 1.25923 0.97698 1.00670 0.95186 1.70123 1.13239 1.29624 1.44802 0.85416 0.77095 0.79006 0.79015 1.18982 1.21363 1.18786 1.20510 1.08777 0.97724 0.94182 0.92352 0.96197 0.92582 0.91868 0.88372 0.75041 0.76187 0.95450 0.90408 0.91391 0.94832 0.90280 1.01745 0.99597 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.89 71.98 0.71 -3.64 16 2 C -0.04 -1.08 6.34 29.85 0.19 -0.89 16 3 C -0.15 -4.26 5.57 -18.70 -0.10 -4.36 16 4 C 0.07 1.41 11.76 82.97 0.98 2.38 16 5 N -0.56 -12.29 6.03 -192.31 -1.16 -13.45 16 6 H 0.44 6.32 8.96 -92.70 -0.83 5.49 16 7 C 0.30 9.77 8.48 133.94 1.14 10.90 16 8 N -0.55 -18.78 10.47 -197.88 -2.07 -20.85 16 9 C 0.31 11.02 12.23 180.87 2.21 13.23 16 10 N -0.60 -25.81 9.63 -197.18 -1.90 -27.71 16 11 C 0.39 17.02 4.68 133.42 0.62 17.64 16 12 N -0.48 -21.69 3.83 -705.15 -2.70 -24.39 16 13 C 0.06 2.34 5.49 86.30 0.47 2.82 16 14 C -0.13 -4.01 9.95 71.98 0.72 -3.29 16 15 C 0.24 13.18 4.55 85.56 0.39 13.57 16 16 C -0.51 -28.73 8.39 25.60 0.21 -28.51 16 17 H 0.07 3.91 7.50 -2.91 -0.02 3.89 16 18 C 0.00 0.18 5.46 84.65 0.46 0.64 16 19 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 20 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 C -0.20 -7.51 6.35 -20.11 -0.13 -7.64 16 25 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.02 0.83 8.14 -2.38 -0.02 0.82 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 2.10 6.97 -2.39 -0.02 2.08 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.23 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.22 6.01 8.06 -2.91 -0.02 5.99 16 32 H 0.03 1.17 7.48 -2.39 -0.02 1.15 16 33 H 0.08 3.35 6.89 -2.39 -0.02 3.33 16 34 H 0.07 2.10 7.40 -2.39 -0.02 2.09 16 35 H 0.03 1.09 7.83 -2.39 -0.02 1.07 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H -0.04 -2.20 8.07 -2.39 -0.02 -2.22 16 38 H -0.01 -0.89 7.99 -2.39 -0.02 -0.91 16 39 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -74.62 327.46 2.58 -72.03 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.23 Total: 12.87 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 7.87 Total: 12.86 kcal Atomic # 7 Polarization: -136.20 SS G_CDS: -7.55 Total: -143.75 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -74.62 2.58 -72.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892787522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.808 kcal (2) G-P(sol) polarization free energy of solvation -74.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds