Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 6 6 C 1.38620 * 125.51021 * 74.72095 * 5 2 1 7 7 C 1.38504 * 107.60401 * 179.89701 * 6 5 2 8 8 C 1.41451 * 133.86802 * 180.02562 * 7 6 5 9 9 N 1.38514 * 120.27675 * 0.32929 * 8 7 6 10 10 C 1.46507 * 120.00010 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47063 * 180.02562 * 10 9 8 12 12 H 1.08005 * 120.00294 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99907 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00064 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00313 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46758 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47391 * 119.99638 * 15 13 11 18 18 H 1.48501 * 109.46940 * 239.99713 * 15 13 11 19 19 N 1.31922 * 119.44290 * 180.30520 * 8 7 6 20 20 C 1.33716 * 121.14876 * 359.97438 * 19 8 7 21 21 C 1.34723 * 121.47977 * 0.02562 * 20 19 8 22 22 N 1.37114 * 119.93736 * 359.97438 * 21 20 19 23 23 N 1.31594 * 125.51361 * 255.02610 * 5 2 1 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 33 33 H 1.08007 * 126.19435 * 359.97438 * 6 5 2 34 34 H 0.97001 * 120.00401 * 359.97438 * 9 8 7 35 35 H 1.09003 * 109.46883 * 299.99971 * 10 9 8 36 36 H 1.08992 * 109.46913 * 59.99745 * 10 9 8 37 37 H 0.97003 * 120.00303 * 179.97438 * 14 13 11 38 38 H 1.08005 * 119.26126 * 180.02562 * 20 19 8 39 39 H 1.08000 * 120.03318 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7105 -1.2305 6 6 2.0204 -0.1969 -2.5180 7 6 2.5677 -1.1544 -3.3560 8 6 2.8183 -1.2118 -4.7469 9 7 2.4965 -0.1372 -5.5595 10 6 2.7593 -0.2030 -6.9993 11 6 2.3216 1.0843 -7.6491 12 1 1.8904 1.8725 -7.0497 13 6 2.4707 1.2555 -9.0090 14 7 2.9953 0.2956 -9.7390 15 14 1.9275 2.8509 -9.8147 16 1 1.3732 3.7631 -8.7823 17 1 3.0930 3.4957 -10.4713 18 1 0.8841 2.5620 -10.8311 19 7 3.3616 -2.2972 -5.2636 20 6 3.6801 -3.3442 -4.4953 21 6 3.4597 -3.3345 -3.1663 22 7 2.8974 -2.2331 -2.5740 23 7 2.5481 -1.9208 -1.2574 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 1.6767 -0.2075 2.1393 33 1 1.6522 0.7744 -2.8139 34 1 2.0971 0.6589 -5.1753 35 1 3.8261 -0.3501 -7.1675 36 1 2.2050 -1.0357 -7.4320 37 1 3.0998 0.4158 -10.6959 38 1 4.1240 -4.2174 -4.9504 39 1 3.7257 -4.1933 -2.5679 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893545093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = 100.121337 kcal Electronic energy + Delta-G solvation = -20634.662755 eV Core-core repulsion = 17578.708892 eV Total energy + Delta-G solvation = -3055.953863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.91007 -38.53802 -36.53662 -35.35827 -32.96845 -31.48721 -30.38276 -28.56207 -27.34014 -27.21317 -26.88742 -23.65299 -23.34888 -21.85822 -21.38369 -18.78284 -18.34234 -16.92276 -16.38390 -15.60576 -15.44162 -15.08379 -14.91405 -14.51252 -14.21650 -13.84945 -13.66261 -13.30761 -13.26992 -12.56064 -12.40531 -12.24351 -12.07070 -11.88563 -11.73704 -11.30491 -11.15977 -11.14187 -10.99171 -10.94876 -10.47309 -10.44414 -10.31169 -9.44816 -9.32523 -9.13531 -8.78349 -8.22260 -6.75287 -6.22832 -4.29876 1.30871 1.43754 2.44336 2.83717 3.20565 3.28071 3.30865 3.78787 4.04199 4.29415 4.36224 4.52864 4.75407 4.90325 4.91458 5.06728 5.14080 5.31576 5.47408 5.53054 5.56116 5.67855 5.70763 5.75657 5.80178 5.85016 5.90418 6.00061 6.08105 6.22148 6.25243 6.39001 6.71972 7.03928 7.12755 7.44056 7.49262 7.73749 7.80510 7.89020 8.20648 8.60908 8.85210 9.36160 10.87123 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.004384 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.213378 B = 6385.190704 C = 7566.043423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.015 3.985 3 C -0.139 4.139 4 C -0.135 4.135 5 C 0.089 3.911 6 C -0.246 4.246 7 C 0.023 3.977 8 C 0.454 3.546 9 N -0.667 5.667 10 C 0.256 3.744 11 C -0.547 4.547 12 H 0.064 0.936 13 C 0.066 3.934 14 N -0.883 5.883 15 Si 0.904 3.096 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.549 5.549 20 C 0.108 3.892 21 C -0.063 4.063 22 N -0.231 5.231 23 N -0.303 5.303 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.151 0.849 34 H 0.405 0.595 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.266 0.734 38 H 0.172 0.828 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -1.665 17.558 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.013 3.987 3 C -0.196 4.196 4 C -0.193 4.193 5 C -0.066 4.066 6 C -0.279 4.279 7 C -0.105 4.105 8 C 0.195 3.805 9 N -0.293 5.293 10 C 0.136 3.864 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.138 4.138 14 N -0.521 5.521 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 N -0.276 5.276 20 C -0.036 4.036 21 C -0.191 4.191 22 N -0.001 5.001 23 N -0.131 5.131 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.169 0.831 34 H 0.240 0.760 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.189 0.811 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.578 -2.917 17.042 17.362 hybrid contribution -0.658 1.613 -0.136 1.748 sum -2.236 -1.304 16.906 17.103 Atomic orbital electron populations 1.21866 0.93125 1.02284 1.02248 1.18992 0.95538 0.94325 0.89847 1.21878 1.01460 0.93997 1.02303 1.21783 1.01358 1.00515 0.95625 1.21936 0.97591 0.91912 0.95198 1.21005 1.13995 1.01688 0.91184 1.19993 1.06048 0.91710 0.92752 1.18337 0.89069 0.89155 0.83937 1.45462 1.60643 1.13263 1.09973 1.19262 0.97513 0.97734 0.71925 1.21242 1.43222 1.00805 0.93278 0.91810 1.24909 0.94749 0.97150 0.96958 1.69974 1.43041 1.32372 1.06666 0.86359 0.78418 0.82760 0.79390 1.19594 1.20740 1.20746 1.68108 1.21998 1.00460 1.37065 1.21857 0.96820 0.96958 0.87998 1.21762 1.10537 0.91764 0.95042 1.45945 1.37554 1.10707 1.05881 1.77661 1.25703 1.16944 0.92762 0.91970 0.91877 0.92487 0.91915 0.92353 0.91825 0.92050 0.92476 0.92449 0.83132 0.75957 0.94876 0.94872 0.92429 0.81081 0.82118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.46 37.16 0.31 -1.04 16 2 C 0.02 0.17 0.95 -155.66 -0.15 0.02 16 3 C -0.14 -1.34 8.19 37.15 0.30 -1.04 16 4 C -0.14 -1.41 8.02 37.16 0.30 -1.11 16 5 C 0.09 1.33 5.62 -82.55 -0.46 0.86 16 6 C -0.25 -3.89 9.88 -39.34 -0.39 -4.28 16 7 C 0.02 0.42 6.78 -84.12 -0.57 -0.15 16 8 C 0.45 9.06 7.55 -155.01 -1.17 7.89 16 9 N -0.67 -13.89 5.69 -61.19 -0.35 -14.23 16 10 C 0.26 6.44 5.46 -5.19 -0.03 6.42 16 11 C -0.55 -14.39 9.28 -34.44 -0.32 -14.71 16 12 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.88 -25.17 13.29 55.43 0.74 -24.43 16 15 Si 0.90 20.42 29.54 -169.99 -5.02 15.39 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 N -0.55 -11.03 9.68 -12.47 -0.12 -11.15 16 20 C 0.11 1.70 11.05 -17.98 -0.20 1.51 16 21 C -0.06 -0.95 11.25 -16.43 -0.18 -1.14 16 22 N -0.23 -4.05 3.97 -10.53 -0.04 -4.10 16 23 N -0.30 -5.07 11.96 33.55 0.40 -4.67 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.61 7.49 -51.93 -0.39 0.22 16 30 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.15 2.05 7.67 -52.48 -0.40 1.65 16 34 H 0.40 7.51 8.09 -40.82 -0.33 7.18 16 35 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.17 2.05 8.06 -52.48 -0.42 1.63 16 39 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -30.60 330.01 -7.80 -38.40 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.73 Total: 4.89 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.65 Total: -5.08 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.63 Total: -58.58 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.60 -7.80 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893545093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.520 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds