Wall clock time and date at job start Mon Mar 30 2020 01:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47201 * 2 1 4 4 C 1.53000 * 109.46981 * 240.00311 * 2 1 3 5 5 C 1.50700 * 109.47183 * 59.99898 * 4 2 1 6 6 H 1.07992 * 119.99858 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99540 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00537 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99551 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47278 * 89.99778 * 9 7 5 11 11 H 1.48505 * 109.47039 * 209.99751 * 9 7 5 12 12 H 1.48500 * 109.47146 * 329.99496 * 9 7 5 13 13 C 1.53007 * 109.47440 * 120.00208 * 2 1 3 14 14 N 1.46500 * 109.47014 * 300.00005 * 13 2 1 15 15 C 1.38393 * 120.00075 * 179.97438 * 14 13 2 16 16 N 1.31900 * 120.30194 * 359.97438 * 15 14 13 17 17 C 1.34025 * 121.33242 * 180.02562 * 16 15 14 18 18 C 1.34437 * 121.67499 * 359.97438 * 17 16 15 19 19 N 1.37737 * 119.83709 * 0.28617 * 18 17 16 20 20 C 1.34335 * 134.23878 * 179.71972 * 19 18 17 21 21 N 1.31116 * 109.35001 * 179.97438 * 20 19 18 22 22 C 1.33377 * 109.83649 * 359.47993 * 21 20 19 23 23 C 1.37612 * 107.43346 * 0.58570 * 22 21 20 24 24 H 1.09003 * 109.47234 * 299.99395 * 1 2 3 25 25 H 1.08992 * 109.47813 * 59.99694 * 1 2 3 26 26 H 1.09001 * 109.47416 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47420 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47402 * 300.00465 * 3 2 1 29 29 H 1.09003 * 109.46990 * 60.00450 * 3 2 1 30 30 H 1.09003 * 109.47232 * 180.02562 * 4 2 1 31 31 H 1.09007 * 109.46926 * 299.99681 * 4 2 1 32 32 H 0.96996 * 119.99815 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.46862 * 180.02562 * 13 2 1 34 34 H 1.08999 * 109.46744 * 59.99439 * 13 2 1 35 35 H 0.97007 * 119.99986 * 0.02562 * 14 13 2 36 36 H 1.08004 * 119.16139 * 179.97438 * 17 16 15 37 37 H 1.08002 * 120.07850 * 180.02562 * 18 17 16 38 38 H 1.07995 * 125.32868 * 0.02562 * 20 19 18 39 39 H 1.07991 * 126.28290 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6263 -1.5514 -3.8527 9 14 1.2481 0.3990 -5.2572 10 1 2.2270 1.4399 -5.6614 11 1 1.0823 -0.5801 -6.3614 12 1 -0.0596 1.0374 -4.9612 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8857 -0.5039 3.7024 16 7 2.6428 -1.5763 3.8303 17 6 2.9784 -2.0526 5.0373 18 6 2.5611 -1.4617 6.1704 19 7 1.7631 -0.3409 6.1050 20 6 1.1917 0.4575 7.0219 21 7 0.5195 1.4051 6.4142 22 6 0.6364 1.2670 5.0928 23 6 1.4187 0.1587 4.8618 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.1299 -0.7216 -1.2491 31 1 1.6766 -1.7489 -1.2493 32 1 2.8606 -1.8827 -4.7337 33 1 3.1300 -0.7209 1.2494 34 1 1.6766 -1.7489 1.2492 35 1 0.9937 0.7577 2.3565 36 1 3.5999 -2.9336 5.1012 37 1 2.8473 -1.8672 7.1295 38 1 1.2739 0.3382 8.0921 39 1 0.1900 1.9019 4.3419 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893865929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:34 Heat of formation + Delta-G solvation = 88.972509 kcal Electronic energy + Delta-G solvation = -20726.620254 eV Core-core repulsion = 17670.182941 eV Total energy + Delta-G solvation = -3056.437312 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.97112 -38.85086 -37.56106 -35.12964 -32.96006 -32.19527 -30.31085 -28.75835 -27.10162 -26.55136 -26.17114 -23.84986 -23.26641 -22.41812 -21.47791 -19.21697 -17.95681 -17.45503 -16.39778 -16.15462 -16.04629 -15.78338 -14.64406 -14.44767 -14.42924 -14.24482 -13.78727 -13.29501 -13.19841 -12.84624 -12.79613 -12.32651 -12.08730 -11.53824 -11.09104 -11.02262 -10.87262 -10.66621 -10.58263 -10.44702 -10.28062 -10.01491 -9.80439 -9.61244 -9.23577 -8.96458 -8.68228 -8.38197 -7.38974 -6.02437 -4.03749 0.89447 1.22171 2.42522 2.90637 3.21060 3.29727 3.36990 3.38887 3.61632 4.25733 4.40751 4.43863 4.45754 4.66335 4.96963 5.20595 5.33277 5.40703 5.43472 5.57686 5.64583 5.73757 6.05737 6.12750 6.17423 6.23288 6.31076 6.34962 6.59560 6.61441 6.93083 7.00239 7.03754 7.04405 7.16177 7.30241 7.60727 7.66611 7.72439 7.96106 8.17852 8.37784 9.00960 9.59678 11.08987 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.037783 B = 0.003654 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.899396 B = 7661.728385 C = 8206.256747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 C -0.128 4.128 4 C 0.038 3.962 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.137 3.863 14 N -0.681 5.681 15 C 0.487 3.513 16 N -0.574 5.574 17 C 0.124 3.876 18 C -0.107 4.107 19 N -0.332 5.332 20 C 0.155 3.845 21 N -0.468 5.468 22 C 0.025 3.975 23 C -0.088 4.088 24 H 0.028 0.972 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.260 0.740 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.411 0.589 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.211 0.789 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 1.723 18.936 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.075 4.075 3 C -0.186 4.186 4 C 0.000 4.000 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.015 3.985 14 N -0.311 5.311 15 C 0.229 3.771 16 N -0.300 5.300 17 C -0.016 4.016 18 C -0.230 4.230 19 N -0.003 5.003 20 C -0.122 4.122 21 N -0.183 5.183 22 C -0.136 4.136 23 C -0.203 4.203 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.249 0.751 36 H 0.186 0.814 37 H 0.181 0.819 38 H 0.228 0.772 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.083 1.510 18.554 18.647 hybrid contribution -0.235 0.357 -0.465 0.632 sum -1.318 1.867 18.089 18.232 Atomic orbital electron populations 1.21775 0.95209 1.01253 1.00320 1.20955 0.95537 0.95935 0.95043 1.21777 1.00615 0.95848 1.00318 1.19077 0.96360 0.95206 0.89334 1.21177 1.31246 1.12100 0.90503 0.92235 1.25004 0.95302 0.95042 0.99084 1.69958 1.36953 1.22995 1.23469 0.86653 0.79215 0.79428 0.83049 1.20760 1.21336 1.19918 1.21739 0.99102 0.95955 0.81749 1.44912 1.52843 1.31304 1.02017 1.17983 0.87191 0.87605 0.84359 1.68121 1.21382 1.14682 1.25770 1.21799 0.96082 0.98181 0.85573 1.22006 1.05879 0.93083 1.02047 1.42611 1.31455 1.19136 1.07096 1.24809 1.00085 0.90780 0.96554 1.70157 1.19972 1.22093 1.06096 1.22493 1.01205 0.96670 0.93248 1.19975 1.11136 1.02621 0.86613 0.95286 0.91296 0.93282 0.93277 0.91305 0.95278 0.96300 0.96295 0.93023 0.91359 0.91359 0.75083 0.81383 0.81902 0.77217 0.80195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.17 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.31 7.65 -34.44 -0.26 -13.57 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.14 2.26 4.60 -4.04 -0.02 2.24 16 14 N -0.68 -9.52 5.09 -60.05 -0.31 -9.83 16 15 C 0.49 7.05 7.55 -155.14 -1.17 5.88 16 16 N -0.57 -8.53 9.68 -12.50 -0.12 -8.65 16 17 C 0.12 1.42 11.04 -17.94 -0.20 1.23 16 18 C -0.11 -1.09 11.06 -16.24 -0.18 -1.27 16 19 N -0.33 -4.00 2.97 -62.34 -0.18 -4.19 16 20 C 0.16 1.70 12.78 -90.50 -1.16 0.54 16 21 N -0.47 -6.10 11.20 -14.17 -0.16 -6.25 16 22 C 0.03 0.32 11.77 -17.11 -0.20 0.11 16 23 C -0.09 -1.18 6.76 -83.92 -0.57 -1.75 16 24 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 25 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.41 5.05 5.98 -40.82 -0.24 4.80 16 36 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.21 1.40 8.06 -52.49 -0.42 0.97 16 39 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -31.24 320.42 -8.98 -40.23 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.30 Total: 2.74 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -3.45 Total: -9.53 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.03 Total: -54.17 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.24 -8.98 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893865929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.199 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds