Wall clock time and date at job start Mon Mar 30 2020 01:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47201 * 2 1 4 4 C 1.53000 * 109.46981 * 240.00311 * 2 1 3 5 5 C 1.50700 * 109.47183 * 59.99898 * 4 2 1 6 6 H 1.07992 * 119.99858 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99540 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00537 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99551 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47278 * 89.99778 * 9 7 5 11 11 H 1.48505 * 109.47039 * 209.99751 * 9 7 5 12 12 H 1.48500 * 109.47146 * 329.99496 * 9 7 5 13 13 C 1.53007 * 109.47440 * 120.00208 * 2 1 3 14 14 N 1.46500 * 109.47014 * 300.00005 * 13 2 1 15 15 C 1.38393 * 120.00075 * 179.97438 * 14 13 2 16 16 N 1.31900 * 120.30194 * 359.97438 * 15 14 13 17 17 C 1.34025 * 121.33242 * 180.02562 * 16 15 14 18 18 C 1.34437 * 121.67499 * 359.97438 * 17 16 15 19 19 N 1.37737 * 119.83709 * 0.28617 * 18 17 16 20 20 C 1.34335 * 134.23878 * 179.71972 * 19 18 17 21 21 N 1.31116 * 109.35001 * 179.97438 * 20 19 18 22 22 C 1.33377 * 109.83649 * 359.47993 * 21 20 19 23 23 C 1.37612 * 107.43346 * 0.58570 * 22 21 20 24 24 H 1.09003 * 109.47234 * 299.99395 * 1 2 3 25 25 H 1.08992 * 109.47813 * 59.99694 * 1 2 3 26 26 H 1.09001 * 109.47416 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47420 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47402 * 300.00465 * 3 2 1 29 29 H 1.09003 * 109.46990 * 60.00450 * 3 2 1 30 30 H 1.09003 * 109.47232 * 180.02562 * 4 2 1 31 31 H 1.09007 * 109.46926 * 299.99681 * 4 2 1 32 32 H 0.96996 * 119.99815 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.46862 * 180.02562 * 13 2 1 34 34 H 1.08999 * 109.46744 * 59.99439 * 13 2 1 35 35 H 0.97007 * 119.99986 * 0.02562 * 14 13 2 36 36 H 1.08004 * 119.16139 * 179.97438 * 17 16 15 37 37 H 1.08002 * 120.07850 * 180.02562 * 18 17 16 38 38 H 1.07995 * 125.32868 * 0.02562 * 20 19 18 39 39 H 1.07991 * 126.28290 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6263 -1.5514 -3.8527 9 14 1.2481 0.3990 -5.2572 10 1 2.2270 1.4399 -5.6614 11 1 1.0823 -0.5801 -6.3614 12 1 -0.0596 1.0374 -4.9612 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8857 -0.5039 3.7024 16 7 2.6428 -1.5763 3.8303 17 6 2.9784 -2.0526 5.0373 18 6 2.5611 -1.4617 6.1704 19 7 1.7631 -0.3409 6.1050 20 6 1.1917 0.4575 7.0219 21 7 0.5195 1.4051 6.4142 22 6 0.6364 1.2670 5.0928 23 6 1.4187 0.1587 4.8618 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.1299 -0.7216 -1.2491 31 1 1.6766 -1.7489 -1.2493 32 1 2.8606 -1.8827 -4.7337 33 1 3.1300 -0.7209 1.2494 34 1 1.6766 -1.7489 1.2492 35 1 0.9937 0.7577 2.3565 36 1 3.5999 -2.9336 5.1012 37 1 2.8473 -1.8672 7.1295 38 1 1.2739 0.3382 8.0921 39 1 0.1900 1.9019 4.3419 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893865929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:33 Heat of formation + Delta-G solvation = 71.754695 kcal Electronic energy + Delta-G solvation = -20727.366874 eV Core-core repulsion = 17670.182941 eV Total energy + Delta-G solvation = -3057.183933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.85814 -39.97239 -38.78981 -36.34077 -34.53367 -33.58444 -31.36673 -29.68148 -28.94804 -27.95675 -27.47673 -25.21323 -24.40856 -23.67536 -22.41608 -20.33109 -19.29864 -18.47308 -18.30874 -17.14739 -17.07803 -16.68876 -16.47388 -15.77633 -15.51218 -15.23492 -14.82039 -14.62482 -14.50812 -14.30379 -13.92497 -13.78121 -13.62061 -12.91479 -12.71692 -12.66545 -12.32964 -12.25642 -12.20940 -11.96142 -11.51193 -11.48969 -11.02146 -10.88378 -10.84129 -10.53605 -10.49432 -9.69627 -8.32195 -8.12657 -6.19845 -0.02580 0.32681 1.43521 1.43845 1.53774 1.55909 2.03950 2.18038 2.45950 2.67393 3.22097 3.38177 3.57258 3.70645 3.79216 4.01060 4.11699 4.13551 4.26169 4.41478 4.59225 4.70109 4.76501 4.81666 4.85237 4.98113 5.13427 5.14466 5.27673 5.40115 5.45676 5.51946 5.54457 5.57955 5.82199 5.91194 5.96626 6.18177 6.31617 6.34574 6.78122 6.95272 7.23000 7.47803 8.99745 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.037783 B = 0.003654 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.899396 B = 7661.728385 C = 8206.256747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.066 4.066 3 C -0.122 4.122 4 C 0.043 3.957 5 C -0.514 4.514 6 H 0.071 0.929 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.955 3.045 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.261 1.261 13 C 0.159 3.841 14 N -0.679 5.679 15 C 0.473 3.527 16 N -0.605 5.605 17 C 0.093 3.907 18 C -0.085 4.085 19 N -0.345 5.345 20 C 0.168 3.832 21 N -0.495 5.495 22 C 0.022 3.978 23 C -0.108 4.108 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.066 0.934 30 H -0.012 1.012 31 H -0.012 1.012 32 H 0.259 0.741 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.419 0.581 36 H 0.194 0.806 37 H 0.207 0.793 38 H 0.252 0.748 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 3.038 21.263 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.067 4.067 3 C -0.180 4.180 4 C 0.005 3.995 5 C -0.552 4.552 6 H 0.089 0.911 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.185 1.185 13 C 0.035 3.965 14 N -0.312 5.312 15 C 0.214 3.786 16 N -0.332 5.332 17 C -0.045 4.045 18 C -0.207 4.207 19 N -0.016 5.016 20 C -0.110 4.110 21 N -0.210 5.210 22 C -0.138 4.138 23 C -0.223 4.223 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.259 0.741 36 H 0.211 0.789 37 H 0.224 0.776 38 H 0.268 0.732 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -2.022 2.832 20.922 21.210 hybrid contribution 0.088 -0.097 -0.992 1.000 sum -1.934 2.735 19.931 20.210 Atomic orbital electron populations 1.21696 0.93837 1.00973 1.01451 1.20737 0.96513 0.96258 0.93148 1.21700 0.99975 0.94824 1.01474 1.18939 0.94348 0.94192 0.92019 1.21601 1.30385 1.12047 0.91174 0.91094 1.25902 0.95709 0.95830 1.02574 1.70109 1.38800 1.24897 1.24046 0.85587 0.79162 0.78160 0.78985 1.20220 1.21571 1.18471 1.21195 0.97872 0.95091 0.82312 1.44536 1.53760 1.31696 1.01214 1.18032 0.87892 0.88066 0.84563 1.68054 1.21789 1.15210 1.28102 1.22288 0.97523 0.99623 0.85111 1.22667 1.03188 0.91383 1.03430 1.42894 1.32027 1.19834 1.06808 1.25682 0.98019 0.89327 0.97951 1.70190 1.21137 1.23305 1.06368 1.22886 1.00712 0.96533 0.93718 1.19988 1.12103 1.03316 0.86940 0.91535 0.92651 0.94318 0.94313 0.92614 0.91527 0.99374 0.99370 0.93188 0.93078 0.93085 0.74117 0.78916 0.77587 0.73195 0.78387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 8.05 71.98 0.58 -3.50 16 2 C -0.07 -2.43 0.54 -52.18 -0.03 -2.46 16 3 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 4 C 0.04 2.12 4.04 29.85 0.12 2.24 16 5 C -0.51 -27.25 7.65 25.60 0.20 -27.05 16 6 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 8 N -0.94 -56.40 13.29 21.45 0.28 -56.11 16 9 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 13 C 0.16 5.39 4.60 86.38 0.40 5.79 16 14 N -0.68 -18.61 5.09 -343.89 -1.75 -20.36 16 15 C 0.47 13.38 7.55 134.00 1.01 14.39 16 16 N -0.61 -17.86 9.68 -193.45 -1.87 -19.73 16 17 C 0.09 1.98 11.04 83.49 0.92 2.90 16 18 C -0.08 -1.46 11.06 82.90 0.92 -0.54 16 19 N -0.34 -7.32 2.97 -351.14 -1.04 -8.37 16 20 C 0.17 3.09 12.78 180.31 2.30 5.39 16 21 N -0.50 -11.59 11.20 -198.74 -2.23 -13.82 16 22 C 0.02 0.51 11.77 84.31 0.99 1.50 16 23 C -0.11 -2.74 6.76 38.76 0.26 -2.48 16 24 H 0.07 1.71 6.86 -2.39 -0.02 1.69 16 25 H 0.05 1.99 6.62 -2.39 -0.02 1.97 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.99 6.62 -2.39 -0.02 1.98 16 29 H 0.07 1.71 6.86 -2.39 -0.02 1.69 16 30 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 32 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.42 9.57 5.98 -92.70 -0.55 9.02 16 36 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 37 H 0.21 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.25 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.20 3.50 8.06 -2.92 -0.02 3.47 16 Total: -1.00 -70.21 320.42 4.64 -65.57 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.51 Total: 14.47 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 8.71 Total: -7.02 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -6.61 Total: -118.39 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.21 4.64 -65.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893865929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.327 kcal (2) G-P(sol) polarization free energy of solvation -70.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds