Wall clock time and date at job start Mon Mar 30 2020 01:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.47081 * 2 1 4 4 C 1.52994 * 109.47604 * 239.99780 * 2 1 3 5 5 C 1.50705 * 109.47062 * 59.99978 * 4 2 1 6 6 H 1.08004 * 119.99863 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99850 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99642 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00296 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.47160 * 90.00561 * 9 7 5 11 11 H 1.48501 * 109.47441 * 210.00269 * 9 7 5 12 12 H 1.48507 * 109.47331 * 330.00535 * 9 7 5 13 13 C 1.53008 * 109.47030 * 119.99689 * 2 1 3 14 14 N 1.46498 * 109.46864 * 300.00170 * 13 2 1 15 15 C 1.38590 * 119.99900 * 180.02562 * 14 13 2 16 16 N 1.31773 * 120.22785 * 359.97398 * 15 14 13 17 17 C 1.33717 * 121.26493 * 180.02562 * 16 15 14 18 18 C 1.34744 * 121.34817 * 0.02855 * 17 16 15 19 19 N 1.37084 * 119.91971 * 359.95322 * 18 17 16 20 20 C 1.36039 * 133.66640 * 180.35686 * 19 18 17 21 21 C 1.35449 * 107.13108 * 180.09491 * 20 19 18 22 22 N 1.33354 * 108.54743 * 359.61072 * 21 20 19 23 23 C 1.32156 * 109.13774 * 0.24223 * 22 21 20 24 24 H 1.09001 * 109.47208 * 300.00591 * 1 2 3 25 25 H 1.08996 * 109.46934 * 60.00170 * 1 2 3 26 26 H 1.08997 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46884 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46641 * 300.00007 * 3 2 1 29 29 H 1.08992 * 109.46998 * 59.99601 * 3 2 1 30 30 H 1.08998 * 109.47681 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.46804 * 300.00074 * 4 2 1 32 32 H 0.97005 * 119.99539 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46816 * 180.02562 * 13 2 1 34 34 H 1.08990 * 109.46837 * 59.99918 * 13 2 1 35 35 H 0.96998 * 120.00439 * 359.97438 * 14 13 2 36 36 H 1.07992 * 119.32412 * 179.97438 * 17 16 15 37 37 H 1.08004 * 120.03950 * 179.97438 * 18 17 16 38 38 H 1.08002 * 126.43571 * 359.97438 * 20 19 18 39 39 H 1.08002 * 125.72997 * 179.88207 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8705 -0.4823 -3.7319 8 7 1.4326 0.1380 -4.8057 9 14 2.9445 -2.0010 -3.9032 10 1 2.0860 -3.2119 -3.9481 11 1 3.7361 -1.9087 -5.1562 12 1 3.8653 -2.0898 -2.7414 13 6 2.0400 -0.7212 1.2494 14 7 1.5516 -0.0305 2.4454 15 6 1.8868 -0.5036 3.7042 16 7 2.6441 -1.5746 3.8304 17 6 2.9797 -2.0492 5.0346 18 6 2.5569 -1.4522 6.1662 19 7 1.7667 -0.3342 6.0953 20 6 1.2005 0.4765 7.0295 21 6 0.5156 1.4361 6.3625 22 7 0.6618 1.2292 5.0533 23 6 1.4167 0.1610 4.8651 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1301 -0.7209 -1.2494 31 1 1.6767 -1.7490 -1.2491 32 1 1.6670 -0.1935 -5.6867 33 1 3.1300 -0.7208 1.2495 34 1 1.6766 -1.7488 1.2494 35 1 0.9942 0.7583 2.3564 36 1 3.6017 -2.9295 5.1016 37 1 2.8404 -1.8538 7.1278 38 1 1.2803 0.3733 8.1016 39 1 -0.0500 2.2372 6.8150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893867704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:38 Heat of formation + Delta-G solvation = 95.899566 kcal Electronic energy + Delta-G solvation = -20774.249059 eV Core-core repulsion = 17718.112126 eV Total energy + Delta-G solvation = -3056.136933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.04212 -38.88030 -37.63603 -35.23783 -33.00907 -32.09649 -30.09448 -29.26633 -27.70502 -26.52417 -26.21263 -23.74970 -23.33678 -22.15610 -21.47591 -19.17451 -17.90478 -17.59083 -16.87458 -16.27609 -16.09896 -15.54005 -14.81679 -14.47605 -14.29798 -13.87096 -13.83461 -13.59218 -13.22226 -13.09564 -12.70987 -12.40571 -12.25460 -11.74098 -11.20586 -11.08343 -10.98541 -10.60406 -10.50082 -10.39265 -9.99858 -9.82195 -9.75549 -9.63453 -9.50013 -8.98309 -8.75353 -8.52328 -7.51912 -6.02760 -4.00039 0.81627 1.19967 2.35697 2.74106 3.17211 3.32154 3.40194 3.43623 3.61512 3.91343 4.27077 4.46566 4.52882 4.76894 5.10926 5.18810 5.29680 5.29735 5.37403 5.53416 5.60497 5.69644 6.03822 6.13862 6.15321 6.19566 6.35449 6.38426 6.58072 6.62566 6.73139 6.87619 7.04063 7.04561 7.10078 7.20372 7.27200 7.37328 7.66015 7.79733 8.09666 8.54592 9.01737 9.59677 11.10042 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.033588 B = 0.003938 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.428711 B = 7108.649152 C = 7745.708140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.130 4.130 4 C 0.000 4.000 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.133 3.867 14 N -0.673 5.673 15 C 0.488 3.512 16 N -0.559 5.559 17 C 0.118 3.882 18 C -0.101 4.101 19 N -0.325 5.325 20 C -0.076 4.076 21 C 0.015 3.985 22 N -0.462 5.462 23 C 0.134 3.866 24 H 0.032 0.968 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.262 0.738 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.419 0.581 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.184 0.816 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 -1.764 23.694 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.065 4.065 3 C -0.188 4.188 4 C -0.038 4.038 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.010 3.990 14 N -0.303 5.303 15 C 0.229 3.771 16 N -0.287 5.287 17 C -0.023 4.023 18 C -0.226 4.226 19 N 0.003 4.997 20 C -0.213 4.213 21 C -0.140 4.140 22 N -0.183 5.183 23 C -0.116 4.116 24 H 0.051 0.949 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.259 0.741 36 H 0.190 0.810 37 H 0.180 0.820 38 H 0.201 0.799 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.434 -1.963 22.061 22.194 hybrid contribution 0.442 -0.667 1.350 1.569 sum 1.876 -2.629 23.411 23.633 Atomic orbital electron populations 1.21793 0.94716 1.01300 1.00989 1.20734 0.95939 0.96011 0.93796 1.21791 1.00437 0.95564 1.00985 1.19578 0.96279 0.95459 0.92480 1.21088 1.31810 1.13373 0.88608 0.90367 1.25000 0.95719 0.96762 0.95972 1.69909 1.45961 1.40560 0.97875 0.86854 0.81320 0.83918 0.77640 1.20388 1.21540 1.18962 1.21781 0.99091 0.95993 0.82101 1.44988 1.52417 1.31351 1.01561 1.17844 0.87885 0.87529 0.83881 1.68013 1.20746 1.13924 1.26052 1.21791 0.96625 0.98540 0.85342 1.21995 1.05563 0.92892 1.02176 1.42396 1.30958 1.18513 1.07827 1.22692 1.06373 0.96520 0.95719 1.22567 1.02282 1.00344 0.88843 1.70402 1.16325 1.13226 1.18357 1.21226 1.05722 0.97622 0.87009 0.94872 0.90766 0.93367 0.93361 0.90763 0.94872 0.96305 0.96758 0.92810 0.91306 0.91308 0.74136 0.80987 0.82038 0.79882 0.79986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 2 C -0.06 -1.19 0.54 -154.50 -0.08 -1.27 16 3 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 4 C 0.00 0.00 3.11 -27.88 -0.09 -0.09 16 5 C -0.51 -13.68 8.20 -34.44 -0.28 -13.97 16 6 H 0.08 2.23 5.92 -52.48 -0.31 1.92 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 9 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.13 2.19 4.60 -4.04 -0.02 2.17 16 14 N -0.67 -10.25 5.10 -59.93 -0.31 -10.55 16 15 C 0.49 7.42 7.56 -154.93 -1.17 6.25 16 16 N -0.56 -8.15 9.67 -12.39 -0.12 -8.27 16 17 C 0.12 1.30 11.06 -17.97 -0.20 1.10 16 18 C -0.10 -1.01 11.03 -16.44 -0.18 -1.19 16 19 N -0.33 -3.94 2.96 -62.50 -0.18 -4.13 16 20 C -0.08 -0.74 11.80 -16.68 -0.20 -0.93 16 21 C 0.02 0.17 11.84 -17.89 -0.21 -0.04 16 22 N -0.46 -6.67 11.30 -12.58 -0.14 -6.81 16 23 C 0.13 1.97 7.71 -155.98 -1.20 0.76 16 24 H 0.03 0.51 6.86 -51.93 -0.36 0.16 16 25 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 29 H 0.03 0.51 6.86 -51.93 -0.36 0.16 16 30 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 31 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.42 6.24 6.18 -40.82 -0.25 5.99 16 36 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16 38 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -31.95 317.15 -8.28 -40.23 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.28 Total: 4.07 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -3.13 Total: -9.52 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.02 Total: -56.27 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.95 -8.28 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893867704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.133 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds