Wall clock time and date at job start Mon Mar 30 2020 01:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.47081 * 2 1 4 4 C 1.52994 * 109.47604 * 239.99780 * 2 1 3 5 5 C 1.50705 * 109.47062 * 59.99978 * 4 2 1 6 6 H 1.08004 * 119.99863 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99850 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99642 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00296 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.47160 * 90.00561 * 9 7 5 11 11 H 1.48501 * 109.47441 * 210.00269 * 9 7 5 12 12 H 1.48507 * 109.47331 * 330.00535 * 9 7 5 13 13 C 1.53008 * 109.47030 * 119.99689 * 2 1 3 14 14 N 1.46498 * 109.46864 * 300.00170 * 13 2 1 15 15 C 1.38590 * 119.99900 * 180.02562 * 14 13 2 16 16 N 1.31773 * 120.22785 * 359.97398 * 15 14 13 17 17 C 1.33717 * 121.26493 * 180.02562 * 16 15 14 18 18 C 1.34744 * 121.34817 * 0.02855 * 17 16 15 19 19 N 1.37084 * 119.91971 * 359.95322 * 18 17 16 20 20 C 1.36039 * 133.66640 * 180.35686 * 19 18 17 21 21 C 1.35449 * 107.13108 * 180.09491 * 20 19 18 22 22 N 1.33354 * 108.54743 * 359.61072 * 21 20 19 23 23 C 1.32156 * 109.13774 * 0.24223 * 22 21 20 24 24 H 1.09001 * 109.47208 * 300.00591 * 1 2 3 25 25 H 1.08996 * 109.46934 * 60.00170 * 1 2 3 26 26 H 1.08997 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46884 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46641 * 300.00007 * 3 2 1 29 29 H 1.08992 * 109.46998 * 59.99601 * 3 2 1 30 30 H 1.08998 * 109.47681 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.46804 * 300.00074 * 4 2 1 32 32 H 0.97005 * 119.99539 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46816 * 180.02562 * 13 2 1 34 34 H 1.08990 * 109.46837 * 59.99918 * 13 2 1 35 35 H 0.96998 * 120.00439 * 359.97438 * 14 13 2 36 36 H 1.07992 * 119.32412 * 179.97438 * 17 16 15 37 37 H 1.08004 * 120.03950 * 179.97438 * 18 17 16 38 38 H 1.08002 * 126.43571 * 359.97438 * 20 19 18 39 39 H 1.08002 * 125.72997 * 179.88207 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8705 -0.4823 -3.7319 8 7 1.4326 0.1380 -4.8057 9 14 2.9445 -2.0010 -3.9032 10 1 2.0860 -3.2119 -3.9481 11 1 3.7361 -1.9087 -5.1562 12 1 3.8653 -2.0898 -2.7414 13 6 2.0400 -0.7212 1.2494 14 7 1.5516 -0.0305 2.4454 15 6 1.8868 -0.5036 3.7042 16 7 2.6441 -1.5746 3.8304 17 6 2.9797 -2.0492 5.0346 18 6 2.5569 -1.4522 6.1662 19 7 1.7667 -0.3342 6.0953 20 6 1.2005 0.4765 7.0295 21 6 0.5156 1.4361 6.3625 22 7 0.6618 1.2292 5.0533 23 6 1.4167 0.1610 4.8651 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1301 -0.7209 -1.2494 31 1 1.6767 -1.7490 -1.2491 32 1 1.6670 -0.1935 -5.6867 33 1 3.1300 -0.7208 1.2495 34 1 1.6766 -1.7488 1.2494 35 1 0.9942 0.7583 2.3564 36 1 3.6017 -2.9295 5.1016 37 1 2.8404 -1.8538 7.1278 38 1 1.2803 0.3733 8.1016 39 1 -0.0500 2.2372 6.8150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893867704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:37 Heat of formation + Delta-G solvation = 76.462795 kcal Electronic energy + Delta-G solvation = -20775.091900 eV Core-core repulsion = 17718.112126 eV Total energy + Delta-G solvation = -3056.979774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.89902 -39.98950 -38.85057 -36.41307 -34.57205 -33.61499 -31.06936 -30.24098 -29.45881 -28.02726 -27.48479 -24.96715 -24.35513 -23.59761 -22.40030 -20.27310 -19.26237 -18.87771 -18.55537 -17.20956 -17.18512 -16.41234 -16.22678 -15.80234 -15.58963 -15.23190 -15.00417 -14.62367 -14.56891 -14.25086 -14.19609 -13.91032 -13.63661 -13.01008 -12.82541 -12.76929 -12.47031 -12.30413 -12.16767 -11.74330 -11.52708 -11.28962 -11.22913 -10.91215 -10.71032 -10.69119 -10.68164 -9.61487 -8.46000 -8.20566 -6.21357 -0.07680 0.32512 1.38754 1.40750 1.51405 1.51989 1.95004 2.16007 2.41394 2.68658 3.03111 3.14845 3.46275 3.71304 3.93056 4.03489 4.05727 4.17412 4.39443 4.48303 4.55489 4.62615 4.72367 4.77146 4.86225 4.93309 5.03194 5.06837 5.28785 5.30351 5.38527 5.39886 5.53445 5.59323 5.66478 5.75562 5.91780 5.98057 6.25528 6.40028 6.79805 6.85622 7.12791 7.41315 8.95338 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.033588 B = 0.003938 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.428711 B = 7108.649152 C = 7745.708140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.060 4.060 3 C -0.123 4.123 4 C 0.001 3.999 5 C -0.505 4.505 6 H 0.047 0.953 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.938 3.062 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.247 1.247 13 C 0.154 3.846 14 N -0.681 5.681 15 C 0.467 3.533 16 N -0.579 5.579 17 C 0.092 3.908 18 C -0.082 4.082 19 N -0.333 5.333 20 C -0.059 4.059 21 C 0.001 3.999 22 N -0.495 5.495 23 C 0.101 3.899 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.417 0.583 36 H 0.205 0.795 37 H 0.207 0.793 38 H 0.229 0.771 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.263 -3.148 27.563 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.060 4.060 3 C -0.181 4.181 4 C -0.037 4.037 5 C -0.543 4.543 6 H 0.066 0.934 7 C -0.192 4.192 8 N -0.595 5.595 9 Si 0.763 3.237 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.171 1.171 13 C 0.030 3.970 14 N -0.313 5.313 15 C 0.209 3.791 16 N -0.307 5.307 17 C -0.047 4.047 18 C -0.207 4.207 19 N -0.006 5.006 20 C -0.196 4.196 21 C -0.154 4.154 22 N -0.217 5.217 23 C -0.147 4.147 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.257 0.743 36 H 0.222 0.778 37 H 0.224 0.776 38 H 0.246 0.754 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 2.417 -3.365 25.986 26.314 hybrid contribution 0.090 -0.166 0.374 0.419 sum 2.507 -3.531 26.360 26.713 Atomic orbital electron populations 1.21692 0.94430 1.01252 1.00716 1.20591 0.96126 0.95992 0.93317 1.21691 1.00375 0.95290 1.00717 1.19524 0.96137 0.95497 0.92523 1.21384 1.30311 1.12280 0.90308 0.93441 1.25881 0.97494 1.00133 0.95741 1.70063 1.48221 1.42782 0.98468 0.85834 0.79793 0.80053 0.78026 1.19599 1.21595 1.17058 1.21339 0.98539 0.95381 0.81700 1.44692 1.53564 1.31679 1.01390 1.17909 0.88995 0.88348 0.83895 1.67967 1.20532 1.13812 1.28356 1.22401 0.97705 0.99905 0.84695 1.22713 1.02968 0.91200 1.03774 1.42751 1.31163 1.19159 1.07496 1.23484 1.04097 0.94832 0.97221 1.23252 1.02635 1.01538 0.87947 1.70359 1.17116 1.13817 1.20445 1.21186 1.07174 0.98536 0.87822 0.92496 0.93598 0.93271 0.93302 0.93588 0.92493 0.96233 0.96391 0.92882 0.91792 0.91726 0.74339 0.77845 0.77643 0.75422 0.77155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 8.05 71.98 0.58 -3.92 16 2 C -0.06 -2.22 0.54 -52.18 -0.03 -2.25 16 3 C -0.12 -4.50 8.05 71.99 0.58 -3.92 16 4 C 0.00 0.05 3.11 29.85 0.09 0.14 16 5 C -0.50 -27.87 8.20 25.60 0.21 -27.66 16 6 H 0.05 2.86 5.92 -2.91 -0.02 2.84 16 7 C 0.00 0.20 5.47 84.65 0.46 0.66 16 8 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 9 Si 0.94 44.30 27.47 68.60 1.88 46.18 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 13 C 0.15 5.01 4.60 86.38 0.40 5.40 16 14 N -0.68 -20.54 5.10 -343.53 -1.75 -22.29 16 15 C 0.47 13.87 7.56 134.05 1.01 14.88 16 16 N -0.58 -16.10 9.67 -193.13 -1.87 -17.97 16 17 C 0.09 1.78 11.06 83.60 0.92 2.70 16 18 C -0.08 -1.33 11.03 83.07 0.92 -0.41 16 19 N -0.33 -7.03 2.96 -351.66 -1.04 -8.07 16 20 C -0.06 -0.92 11.80 83.40 0.98 0.06 16 21 C 0.00 0.02 11.84 83.82 0.99 1.01 16 22 N -0.49 -13.72 11.30 -193.71 -2.19 -15.90 16 23 C 0.10 2.83 7.71 134.42 1.04 3.87 16 24 H 0.06 1.78 6.86 -2.39 -0.02 1.76 16 25 H 0.04 1.91 6.62 -2.39 -0.02 1.90 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.92 6.62 -2.39 -0.02 1.90 16 29 H 0.06 1.78 6.86 -2.39 -0.02 1.76 16 30 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 31 H 0.02 0.80 7.57 -2.38 -0.02 0.78 16 32 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.42 12.39 6.18 -92.71 -0.57 11.82 16 36 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.21 1.36 8.06 -2.91 -0.02 1.33 16 38 H 0.23 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -72.26 317.15 3.93 -68.32 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.43 Total: 18.44 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 8.16 Total: -9.44 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -6.55 Total: -123.51 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -72.26 3.93 -68.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893867704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.787 kcal (2) G-P(sol) polarization free energy of solvation -72.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds