Wall clock time and date at job start Mon Mar 30 2020 02:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38285 * 119.92311 * 269.73082 * 10 9 7 12 12 C 1.38107 * 120.06832 * 179.72298 * 11 10 9 13 13 C 1.38910 * 119.92810 * 0.54740 * 12 11 10 14 14 N 1.39671 * 120.07858 * 179.74520 * 13 12 11 15 15 C 1.46506 * 119.99868 * 359.97438 * 14 13 12 16 16 H 1.09003 * 109.57108 * 35.24796 * 15 14 13 17 17 C 1.50463 * 109.57359 * 155.62238 * 15 14 13 18 18 C 1.54285 * 113.03699 * 211.96518 * 17 15 14 19 19 C 1.54061 * 112.29072 * 318.29905 * 18 17 15 20 20 N 1.44276 * 111.97657 * 318.91698 * 19 18 17 21 21 C 1.47799 * 109.45668 * 96.44178 * 20 19 18 22 22 C 1.45869 * 112.92401 * 276.73103 * 21 20 19 23 23 C 1.38908 * 119.84884 * 359.72923 * 13 12 11 24 24 C 1.38103 * 119.92866 * 359.97438 * 23 13 12 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.07996 * 119.96896 * 359.97438 * 11 10 9 29 29 H 1.07999 * 120.03546 * 180.27114 * 12 11 10 30 30 H 0.97002 * 120.00682 * 179.97438 * 14 13 12 31 31 H 1.08999 * 108.76755 * 332.88386 * 17 15 14 32 32 H 1.09005 * 108.76631 * 91.04895 * 17 15 14 33 33 H 1.09007 * 108.91810 * 197.57834 * 18 17 15 34 34 H 1.09002 * 108.92144 * 79.02682 * 18 17 15 35 35 H 1.08995 * 108.98590 * 198.27655 * 19 18 17 36 36 H 1.08999 * 108.91735 * 79.51269 * 19 18 17 37 37 H 1.00902 * 111.00323 * 333.57587 * 20 19 18 38 38 H 1.09000 * 108.79746 * 155.84000 * 21 20 19 39 39 H 1.08998 * 108.79129 * 37.61551 * 21 20 19 40 40 H 1.08999 * 109.05267 * 300.77831 * 22 21 20 41 41 H 1.09002 * 108.99720 * 181.82599 * 22 21 20 42 42 H 1.08002 * 120.03497 * 180.02562 * 23 13 12 43 43 H 1.07995 * 119.96768 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.6744 -4.1778 -1.1858 12 6 3.5762 -5.2237 -1.1848 13 6 4.0287 -5.7475 0.0196 14 7 4.9367 -6.8088 0.0243 15 6 5.4126 -7.3713 -1.2420 16 1 5.5093 -6.5761 -1.9813 17 6 6.7481 -8.0311 -1.0302 18 6 7.6646 -7.9504 -2.2686 19 6 6.8989 -8.2093 -3.5802 20 7 5.9481 -9.2863 -3.4466 21 6 4.6094 -8.7286 -3.1618 22 6 4.4073 -8.4296 -1.7485 23 6 3.5764 -5.2131 1.2194 24 6 2.6792 -4.1632 1.2112 25 1 -0.4850 0.8400 0.0004 26 1 0.6245 -2.5529 0.8956 27 1 0.6244 -2.5609 -0.8844 28 1 2.3186 -3.7733 -2.1218 29 1 3.9259 -5.6369 -2.1193 30 1 5.2523 -7.1734 0.8660 31 1 7.2489 -7.5480 -0.1912 32 1 6.5856 -9.0800 -0.7818 33 1 8.4578 -8.6917 -2.1703 34 1 8.1140 -6.9583 -2.3118 35 1 7.6131 -8.4622 -4.3638 36 1 6.3679 -7.3009 -3.8646 37 1 6.2319 -9.9318 -2.7249 38 1 3.8544 -9.4475 -3.4801 39 1 4.4816 -7.8112 -3.7365 40 1 4.5322 -9.3448 -1.1698 41 1 3.3938 -8.0545 -1.6065 42 1 3.9265 -5.6177 2.1575 43 1 2.3274 -3.7470 2.1436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925820494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:41 Heat of formation + Delta-G solvation = 13.969588 kcal Electronic energy + Delta-G solvation = -20850.079574 eV Core-core repulsion = 17893.930235 eV Total energy + Delta-G solvation = -2956.149340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.00165 -38.47782 -35.56526 -33.22106 -32.84099 -31.74592 -30.18761 -29.53689 -26.54442 -25.59672 -24.53976 -22.75113 -22.15392 -21.53953 -20.10672 -19.77903 -16.98650 -16.36434 -16.22449 -15.73965 -15.36105 -15.12027 -14.82790 -14.32270 -14.11912 -13.51252 -13.49588 -13.26035 -13.04209 -12.76362 -12.57434 -12.31578 -12.04192 -11.77368 -11.51053 -11.20779 -11.11797 -11.10517 -10.95949 -10.68207 -10.62057 -10.52310 -10.07837 -9.77896 -9.39852 -9.02853 -8.72212 -8.36444 -8.23000 -6.76751 -5.96659 -4.01282 2.12709 2.36808 3.34962 3.38812 3.42286 3.55064 4.08047 4.33668 4.42502 4.46890 4.67498 4.70563 4.83980 4.90828 4.98020 5.26376 5.34197 5.36069 5.42179 5.46763 5.56707 5.57579 5.67231 5.71536 5.77548 5.84067 5.90458 6.03332 6.07026 6.17222 6.33420 6.46746 6.72206 6.76393 6.86466 7.11766 7.31102 7.31685 7.44598 7.62435 7.85077 7.98577 7.98990 8.05678 8.42017 9.04341 9.62110 11.11735 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.028309 B = 0.003429 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.831943 B = 8164.264183 C = 8317.690786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.053 3.947 10 C -0.083 4.083 11 C -0.081 4.081 12 C -0.194 4.194 13 C 0.181 3.819 14 N -0.752 5.752 15 C 0.159 3.841 16 H 0.078 0.922 17 C -0.131 4.131 18 C -0.148 4.148 19 C 0.049 3.951 20 N -0.673 5.673 21 C 0.051 3.949 22 C -0.169 4.169 23 C -0.193 4.193 24 C -0.080 4.080 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.391 0.609 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.340 0.660 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.771 -18.727 -3.326 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.085 4.085 11 C -0.100 4.100 12 C -0.217 4.217 13 C 0.082 3.918 14 N -0.384 5.384 15 C 0.053 3.947 16 H 0.096 0.904 17 C -0.169 4.169 18 C -0.187 4.187 19 C -0.081 4.081 20 N -0.302 5.302 21 C -0.079 4.079 22 C -0.209 4.209 23 C -0.216 4.216 24 C -0.099 4.099 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.133 0.867 29 H 0.125 0.875 30 H 0.225 0.775 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.158 0.842 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.125 0.875 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.532 -18.703 -4.217 22.905 hybrid contribution 0.726 1.150 1.391 1.946 sum 13.258 -17.553 -2.826 22.178 Atomic orbital electron populations 1.69948 1.06008 1.26773 1.50824 1.25014 0.94858 0.99161 0.95378 0.86633 0.79552 0.83018 0.78673 1.20224 1.21286 1.20244 1.21095 0.93008 0.90131 1.50520 0.92637 1.18244 0.92499 0.89657 0.97956 1.20464 0.99120 0.97104 0.91801 1.20854 0.96121 0.94755 0.98238 1.20518 1.03942 1.01751 0.95440 1.17590 0.91310 0.88893 0.93971 1.44526 1.50298 1.37144 1.06424 1.20516 0.91862 0.94985 0.87358 0.90360 1.21677 0.95462 1.00949 0.98850 1.22560 0.98616 1.02759 0.94789 1.21946 0.95429 0.94559 0.96193 1.61085 1.02335 1.15998 1.50749 1.20956 0.91565 1.00336 0.95020 1.21791 1.01879 0.99592 0.97670 1.20461 1.04112 1.01629 0.95369 1.20832 0.96077 0.94720 0.98238 0.92893 0.95707 0.95701 0.86672 0.87463 0.77486 0.91085 0.91988 0.91565 0.91337 0.90985 0.91522 0.84238 0.90815 0.91156 0.92028 0.90356 0.87503 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.56 9.09 -34.44 -0.31 -14.87 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.05 1.40 5.10 -29.03 -0.15 1.26 16 10 C -0.08 -1.85 5.07 -104.58 -0.53 -2.39 16 11 C -0.08 -1.62 9.69 -39.61 -0.38 -2.00 16 12 C -0.19 -3.31 9.04 -39.38 -0.36 -3.67 16 13 C 0.18 2.89 6.62 -83.79 -0.55 2.33 16 14 N -0.75 -9.10 5.17 -52.63 -0.27 -9.37 16 15 C 0.16 1.60 1.79 -68.40 -0.12 1.48 16 16 H 0.08 0.91 5.53 -51.93 -0.29 0.62 16 17 C -0.13 -1.05 4.88 -27.33 -0.13 -1.18 16 18 C -0.15 -1.07 5.92 -25.50 -0.15 -1.22 16 19 C 0.05 0.38 6.01 -4.67 -0.03 0.36 16 20 N -0.67 -5.51 6.91 -118.15 -0.82 -6.33 16 21 C 0.05 0.44 5.87 -6.70 -0.04 0.40 16 22 C -0.17 -1.59 4.91 -29.31 -0.14 -1.74 16 23 C -0.19 -3.29 9.90 -39.38 -0.39 -3.68 16 24 C -0.08 -1.60 9.69 -39.61 -0.38 -1.98 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 29 H 0.11 1.60 6.23 -52.49 -0.33 1.27 16 30 H 0.39 4.13 8.53 -40.82 -0.35 3.78 16 31 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 32 H 0.06 0.44 6.79 -51.93 -0.35 0.09 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.57 6.51 -51.93 -0.34 0.24 16 37 H 0.34 2.48 7.35 -39.29 -0.29 2.19 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.66 7.24 -51.93 -0.38 0.29 16 40 H 0.06 0.54 7.59 -51.93 -0.39 0.15 16 41 H 0.08 0.90 7.97 -51.93 -0.41 0.48 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -30.12 335.84 -10.96 -41.08 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.87 Total: 4.22 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -3.78 Total: -25.35 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -0.35 Total: -41.85 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.12 -10.96 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925820494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.051 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds