Wall clock time and date at job start Mon Mar 30 2020 02:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38285 * 119.92311 * 269.73082 * 10 9 7 12 12 C 1.38107 * 120.06832 * 179.72298 * 11 10 9 13 13 C 1.38910 * 119.92810 * 0.54740 * 12 11 10 14 14 N 1.39671 * 120.07858 * 179.74520 * 13 12 11 15 15 C 1.46506 * 119.99868 * 359.97438 * 14 13 12 16 16 H 1.09003 * 109.57108 * 35.24796 * 15 14 13 17 17 C 1.50463 * 109.57359 * 155.62238 * 15 14 13 18 18 C 1.54285 * 113.03699 * 211.96518 * 17 15 14 19 19 C 1.54061 * 112.29072 * 318.29905 * 18 17 15 20 20 N 1.44276 * 111.97657 * 318.91698 * 19 18 17 21 21 C 1.47799 * 109.45668 * 96.44178 * 20 19 18 22 22 C 1.45869 * 112.92401 * 276.73103 * 21 20 19 23 23 C 1.38908 * 119.84884 * 359.72923 * 13 12 11 24 24 C 1.38103 * 119.92866 * 359.97438 * 23 13 12 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.07996 * 119.96896 * 359.97438 * 11 10 9 29 29 H 1.07999 * 120.03546 * 180.27114 * 12 11 10 30 30 H 0.97002 * 120.00682 * 179.97438 * 14 13 12 31 31 H 1.08999 * 108.76755 * 332.88386 * 17 15 14 32 32 H 1.09005 * 108.76631 * 91.04895 * 17 15 14 33 33 H 1.09007 * 108.91810 * 197.57834 * 18 17 15 34 34 H 1.09002 * 108.92144 * 79.02682 * 18 17 15 35 35 H 1.08995 * 108.98590 * 198.27655 * 19 18 17 36 36 H 1.08999 * 108.91735 * 79.51269 * 19 18 17 37 37 H 1.00902 * 111.00323 * 333.57587 * 20 19 18 38 38 H 1.09000 * 108.79746 * 155.84000 * 21 20 19 39 39 H 1.08998 * 108.79129 * 37.61551 * 21 20 19 40 40 H 1.08999 * 109.05267 * 300.77831 * 22 21 20 41 41 H 1.09002 * 108.99720 * 181.82599 * 22 21 20 42 42 H 1.08002 * 120.03497 * 180.02562 * 23 13 12 43 43 H 1.07995 * 119.96768 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.6744 -4.1778 -1.1858 12 6 3.5762 -5.2237 -1.1848 13 6 4.0287 -5.7475 0.0196 14 7 4.9367 -6.8088 0.0243 15 6 5.4126 -7.3713 -1.2420 16 1 5.5093 -6.5761 -1.9813 17 6 6.7481 -8.0311 -1.0302 18 6 7.6646 -7.9504 -2.2686 19 6 6.8989 -8.2093 -3.5802 20 7 5.9481 -9.2863 -3.4466 21 6 4.6094 -8.7286 -3.1618 22 6 4.4073 -8.4296 -1.7485 23 6 3.5764 -5.2131 1.2194 24 6 2.6792 -4.1632 1.2112 25 1 -0.4850 0.8400 0.0004 26 1 0.6245 -2.5529 0.8956 27 1 0.6244 -2.5609 -0.8844 28 1 2.3186 -3.7733 -2.1218 29 1 3.9259 -5.6369 -2.1193 30 1 5.2523 -7.1734 0.8660 31 1 7.2489 -7.5480 -0.1912 32 1 6.5856 -9.0800 -0.7818 33 1 8.4578 -8.6917 -2.1703 34 1 8.1140 -6.9583 -2.3118 35 1 7.6131 -8.4622 -4.3638 36 1 6.3679 -7.3009 -3.8646 37 1 6.2319 -9.9318 -2.7249 38 1 3.8544 -9.4475 -3.4801 39 1 4.4816 -7.8112 -3.7365 40 1 4.5322 -9.3448 -1.1698 41 1 3.3938 -8.0545 -1.6065 42 1 3.9265 -5.6177 2.1575 43 1 2.3274 -3.7470 2.1436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925820494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:35 Heat of formation + Delta-G solvation = -4.647828 kcal Electronic energy + Delta-G solvation = -20850.886886 eV Core-core repulsion = 17893.930235 eV Total energy + Delta-G solvation = -2956.956651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93599 -39.71354 -36.74725 -35.10391 -33.55881 -33.06030 -31.66053 -31.02012 -28.07495 -26.48920 -25.55565 -24.53714 -23.43227 -22.35588 -21.54276 -20.65460 -18.49463 -18.15926 -17.30361 -16.75255 -16.44894 -16.18074 -15.83774 -15.62765 -15.49960 -14.67430 -14.55325 -14.42876 -14.18530 -14.14143 -13.96036 -13.57504 -13.21407 -13.19315 -13.09252 -12.55384 -12.47053 -12.32489 -12.19496 -11.84453 -11.74959 -11.60753 -11.54639 -11.35967 -11.31486 -10.58578 -10.54927 -9.70356 -9.37257 -8.31046 -7.96971 -6.31038 0.65242 0.86971 1.39095 1.42202 1.50524 2.40941 2.51872 3.12043 3.13385 3.43177 3.63832 3.78322 4.01848 4.11737 4.14687 4.19488 4.24065 4.32007 4.48949 4.56947 4.59797 4.74162 4.75343 4.76789 4.80774 4.95324 5.06665 5.10891 5.15370 5.18255 5.21837 5.22423 5.32141 5.36844 5.39212 5.54077 5.69118 5.80338 6.02632 6.11003 6.21984 6.24216 6.53933 6.57881 6.82140 6.96176 7.37329 8.91357 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.028309 B = 0.003429 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.831943 B = 8164.264183 C = 8317.690786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.064 3.936 10 C -0.122 4.122 11 C -0.090 4.090 12 C -0.192 4.192 13 C 0.200 3.800 14 N -0.738 5.738 15 C 0.156 3.844 16 H 0.065 0.935 17 C -0.126 4.126 18 C -0.142 4.142 19 C 0.049 3.951 20 N -0.674 5.674 21 C 0.055 3.945 22 C -0.159 4.159 23 C -0.190 4.190 24 C -0.089 4.089 25 H 0.265 0.735 26 H -0.003 1.003 27 H -0.003 1.003 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.404 0.596 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.347 0.653 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.139 0.861 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.588 -20.322 -3.165 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.027 3.973 10 C -0.124 4.124 11 C -0.109 4.109 12 C -0.215 4.215 13 C 0.098 3.902 14 N -0.369 5.369 15 C 0.051 3.949 16 H 0.083 0.917 17 C -0.164 4.164 18 C -0.181 4.181 19 C -0.081 4.081 20 N -0.304 5.304 21 C -0.075 4.075 22 C -0.199 4.199 23 C -0.213 4.213 24 C -0.108 4.108 25 H 0.074 0.926 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.126 0.874 29 H 0.147 0.853 30 H 0.240 0.760 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.166 0.834 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.157 0.843 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.384 -20.346 -4.052 25.828 hybrid contribution -0.097 1.489 1.312 1.986 sum 15.287 -18.857 -2.741 24.430 Atomic orbital electron populations 1.70081 1.07695 1.27923 1.51554 1.25954 0.95782 1.03133 0.94699 0.85505 0.78312 0.78123 0.79145 1.19291 1.20474 1.19263 1.21424 0.93026 0.91522 1.50601 0.92942 1.17976 0.92801 0.91376 0.95175 1.20136 1.00727 0.97687 0.93859 1.20828 0.97103 0.95856 0.97130 1.20636 1.03018 1.00745 0.97051 1.17654 0.90575 0.88856 0.93137 1.44604 1.48626 1.35590 1.08073 1.20668 0.93363 0.94892 0.86004 0.91651 1.21620 0.94014 1.01523 0.99261 1.22508 0.98613 1.03067 0.93945 1.21944 0.95373 0.93994 0.96807 1.61080 1.02015 1.16174 1.51124 1.20881 0.92155 1.00067 0.94397 1.21692 1.00325 0.99652 0.98273 1.20668 1.02965 1.00453 0.97184 1.20836 0.97031 0.95853 0.97097 0.92625 0.98423 0.98505 0.87429 0.85285 0.76003 0.90912 0.90478 0.90038 0.91738 0.90477 0.92635 0.83384 0.90548 0.92089 0.90754 0.92364 0.84325 0.87149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.53 -31.35 9.09 25.60 0.23 -31.11 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.06 3.58 5.10 29.10 0.15 3.73 16 10 C -0.12 -5.69 5.07 -19.84 -0.10 -5.79 16 11 C -0.09 -3.72 9.69 22.25 0.22 -3.50 16 12 C -0.19 -6.37 9.04 22.40 0.20 -6.17 16 13 C 0.20 5.94 6.62 38.21 0.25 6.19 16 14 N -0.74 -15.47 5.17 -320.41 -1.66 -17.13 16 15 C 0.16 2.70 1.79 44.68 0.08 2.78 16 16 H 0.07 1.36 5.53 -2.39 -0.01 1.34 16 17 C -0.13 -1.55 4.88 30.21 0.15 -1.41 16 18 C -0.14 -1.60 5.92 31.39 0.19 -1.42 16 19 C 0.05 0.65 6.01 87.15 0.52 1.18 16 20 N -0.67 -9.33 6.91 -527.71 -3.65 -12.97 16 21 C 0.05 0.85 5.87 83.94 0.49 1.34 16 22 C -0.16 -2.60 4.91 28.92 0.14 -2.46 16 23 C -0.19 -6.15 9.90 22.40 0.22 -5.92 16 24 C -0.09 -3.63 9.69 22.25 0.22 -3.42 16 25 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 26 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 27 H 0.00 -0.20 8.08 -2.38 -0.02 -0.22 16 28 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 29 H 0.13 3.67 6.23 -2.91 -0.02 3.65 16 30 H 0.40 6.88 8.53 -92.71 -0.79 6.08 16 31 H 0.07 0.93 7.88 -2.39 -0.02 0.91 16 32 H 0.08 0.76 6.79 -2.38 -0.02 0.74 16 33 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.87 6.51 -2.39 -0.02 0.85 16 37 H 0.35 3.91 7.35 -89.69 -0.66 3.25 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.07 7.24 -2.39 -0.02 1.05 16 40 H 0.07 1.05 7.59 -2.39 -0.02 1.03 16 41 H 0.06 1.22 7.97 -2.39 -0.02 1.20 16 42 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 43 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -67.07 335.84 -0.01 -67.09 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -0.45 Total: 18.51 kcal Atomic # 6 Polarization: -48.82 SS G_CDS: 3.42 Total: -45.40 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -5.02 Total: -87.61 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -67.07 -0.01 -67.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925820494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.440 kcal (2) G-P(sol) polarization free energy of solvation -67.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds